mRNA_H-elongata_contig69248.14573.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69248.14573.1
Unique NamemRNA_H-elongata_contig69248.14573.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: A0A6H5LAA3_9PHAE (PHS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAA3_9PHAE)

HSP 1 Score: 382 bits (980), Expect = 3.210e-124
Identity = 193/265 (72.83%), Postives = 226/265 (85.28%), Query Frame = 3
Query:    3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAFRVTTLHEGNIVATDH 797
            NLNYWDS ASFAGEV+NPG+TYPRAL AC+ LVVLC GLP+ VGTG+A+VA AA   +   G GRWSLW DGYFA+VA AI GRWLGVW V+AAAAANIGLFEAEM+SDA QLMGMAERGMLPA FAKRGP+GIS LAI+ASSTGVAFLGLL F+ I+EILNLLYCFA++LEF AF+KLRVSHRD++RPY+IP GT+GVCLLLLPA+ FVLLLA+ SS +TW VSG+A+LIG  +YPGL LA R++WC FR  T +EG++   D+
Sbjct:  305 NLNYWDSAASFAGEVENPGRTYPRALVACVALVVLCYGLPIFVGTGAASVATAAAANSAGEG-GRWSLWEDGYFAEVAEAITGRWLGVWVVLAAAAANIGLFEAEMTSDALQLMGMAERGMLPAVFAKRGPHGISTLAIVASSTGVAFLGLLGFETIVEILNLLYCFAEILEFVAFIKLRVSHRDMHRPYEIPLGTVGVCLLLLPAACFVLLLAAFSSVITWVVSGVALLIGVGLYPGLLLAKREKWCEFRSATRYEGDVDGADN 568          
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: UPI00053CA08C (probable polyamine transporter At3g19553 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053CA08C)

HSP 1 Score: 231 bits (589), Expect = 4.520e-67
Identity = 127/250 (50.80%), Postives = 168/250 (67.20%), Query Frame = 3
Query:    3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAF 752
            NLNYWD  ++ AGEV+NPG+T+P+ALF  ++LV+    +P++ GTG+ A ++ +DE            W DGYFA V  AI G  L VW   A+A +N+GLFEAEMSSDAFQL+GM+E GMLPA FA+R  +G   ++I+ S+TGV FL  L FQ IIE LN LY    LLEFAAFV+LR+   DL+RPYK+P GT GV LL  P S+ ++L+  L+S  T+ VSG  +L G  +YP L L   +RW +F
Sbjct:  211 NLNYWDKASTLAGEVENPGQTFPKALFGAVLLVICSYLVPLMAGTGALA-SSLSDE------------WSDGYFAQVGMAIGGVGLSVWIQAASALSNLGLFEAEMSSDAFQLLGMSEIGMLPAFFARRSKHGTPTISILCSATGVIFLSWLSFQEIIEFLNFLYALGMLLEFAAFVRLRIKKADLHRPYKVPLGTCGVALLCFPPSLLLILVMVLASLRTFLVSGAVILFGFCLYPFLSLVKEKRWLSF 447          
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: A0A7I8K7T1_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K7T1_SPIIN)

HSP 1 Score: 231 bits (589), Expect = 7.560e-67
Identity = 126/263 (47.91%), Postives = 167/263 (63.50%), Query Frame = 3
Query:    3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAFRVTTLHEGNIVAT 791
            NLNYWD  ++ AGEV++P +T+PRA++  + LVV    +P++ GTG      A D       + +   W DGYFA V   I G WL +W   AA  +N+GLFEAEM+SDAFQL+GM+E GMLPA FA R  YG   ++I+ S+TGV  L  L FQ IIE LN LY    LLEFAAFV+LR+   DL+RPY+IP GT GV +  LP S+ ++L+ SL+S  T+ VSGI +L G  +YPG++ A  +RW  F  T +  G    T
Sbjct:  215 NLNYWDKASTLAGEVEDPSRTFPRAIYGAVALVVASYLVPLMAGTG------ALD-------RSKTEEWSDGYFAQVGLLIGGVWLKLWIQAAAGMSNMGLFEAEMTSDAFQLLGMSEIGMLPAIFANRSKYGTPTISILCSATGVLLLSWLSFQQIIEFLNFLYALGMLLEFAAFVRLRIKKPDLHRPYRIPLGTFGVTVFCLPPSLLIVLVMSLASARTFIVSGIVILFGFLLYPGIEYAKERRWAVFYSTPMSSGGYSDT 464          
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: A0A2I4F7X8_JUGRE (probable polyamine transporter At3g19553 n=9 Tax=Fagales TaxID=3502 RepID=A0A2I4F7X8_JUGRE)

HSP 1 Score: 229 bits (584), Expect = 4.740e-66
Identity = 126/250 (50.40%), Postives = 163/250 (65.20%), Query Frame = 3
Query:    3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAF 752
            NLNYWD  ++ AGEV+NP KT+P+ALF  +VLVVL   +P+L GTG  A  +A  E            W DGYFA+V   I G WL  W   AAA +N+GLFEAEMS DAFQL+GM+E GMLPA FA R  YG   ++I+ S+TGV FL  + FQ I+E LN LY    LLEFAAF+KLR+   DL+RPYK+P  T GV +L LP ++ ++L+  L+S  T+ VSG+ M+ G  +YP L  A  ++W  F
Sbjct:  211 NLNYWDKASTLAGEVENPSKTFPKALFGAVVLVVLSYLIPLLAGTG--ATKSAPSE------------WSDGYFAEVGMLIGGYWLKWWIQAAAAMSNMGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTISILCSATGVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLPPALMLVLVMCLASAKTFLVSGVVMITGFLLYPALVHAKDRKWTRF 446          
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: A0A6I9SHE1_ELAGV (probable polyamine transporter At3g19553 isoform X1 n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9SHE1_ELAGV)

HSP 1 Score: 229 bits (583), Expect = 6.640e-66
Identity = 125/256 (48.83%), Postives = 167/256 (65.23%), Query Frame = 3
Query:    3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAFRVTTLH 770
            NLNYWD  ++ AGEV++P +T+PRAL+  +VLVV    +P+L GTG      A D    RTG+     W DGYFA V   I G WL  W   AAA +N+GLF+AEMSSD+FQL+GM+E GMLPA FA R  YG   ++I+ S++G+ FL  + FQ I+E LN LY    LLEFAAF+KLR+   DL+RPYK+P GT+G  LL LP +  ++L+  L+S  T+ VSG  ML G  +YP ++   R+ W  F  T++H
Sbjct:  213 NLNYWDKASTLAGEVEDPTRTFPRALYGAVVLVVASYLIPLLAGTG------AMDG--SRTGE-----WTDGYFAQVGMVIGGPWLRWWIQAAAAMSNMGLFQAEMSSDSFQLLGMSEMGMLPAFFAIRSKYGTPTISILFSASGIIFLSWMSFQEILEFLNFLYALGMLLEFAAFIKLRIKKPDLHRPYKVPVGTLGAVLLCLPPAFLLILVMCLASARTFIVSGSVMLFGALLYPAIEYMKRRNWVKFISTSVH 455          
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: A0A7N0TMI3_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TMI3_KALFE)

HSP 1 Score: 228 bits (582), Expect = 6.820e-66
Identity = 126/250 (50.40%), Postives = 165/250 (66.00%), Query Frame = 3
Query:    3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAF 752
            NLNYWD  ++ AGEV+NP +T+P+AL+A +VLV+    +P+L GTG+ +           +G G WS   DGYFA+V   I G WL  W   AAA +N+GLFEAEMS+DAFQL+GM+E GMLPA FA R  YG    +I+ S+TGV FL  + FQ IIE LN LY    LLEFAAF+KLR++  DL+RPY+IP  T GV +L LP S+ +LL+  L+S  T  VSG+ +L+G  +YP L  A  + W  F
Sbjct:  212 NLNYWDKASTLAGEVENPARTFPKALYAAVVLVMCSYLIPLLAGTGALS-----------SGSGEWS---DGYFAEVGMLIGGFWLKSWIQAAAAMSNLGLFEAEMSADAFQLLGMSEIGMLPAIFASRSKYGTPTFSILCSATGVIFLSWMSFQEIIEFLNFLYAIGMLLEFAAFIKLRITKPDLHRPYRIPLQTFGVIMLCLPPSLLLLLVMCLASFKTLLVSGVVILVGMVLYPTLIRAKDRNWIKF 447          
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: D8TFT1_SELML (Uncharacterized protein LAT2-1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TFT1_SELML)

HSP 1 Score: 228 bits (581), Expect = 6.980e-66
Identity = 129/250 (51.60%), Postives = 165/250 (66.00%), Query Frame = 3
Query:    3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAF 752
            NLNYWDS ++  GEVD P +T PRAL A +VLVV    LP+L GTG+A               G   LW DGYFA +A  I G WL  W  +AA  +N G+FEAEMSSD+FQL+GMAERG+LPAAFA+R  YG   L I+ S+TGV  L  L+FQ IIEILN LYC   LLEFAAFV LR+   +L RPYK+P GTIGV ++ L  SV ++++  ++S  T  +S +  L+G A+YP +QLA ++ W +F
Sbjct:  205 NLNYWDSVSTLVGEVDRPHETVPRALAAALVLVVASYLLPLLAGTGAAP-------------PGDRKLWADGYFAHIALKIGGGWLKWWVELAALLSNAGMFEAEMSSDSFQLLGMAERGILPAAFARRSRYGTPVLGILFSATGVILLSWLNFQEIIEILNFLYCCGMLLEFAAFVWLRIKQPNLVRPYKVPLGTIGVTVMCLVPSVLLVVVMCIASAKTVVLSVVFSLVGFAVYPAIQLAKKKSWLSF 441          
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: PHSD_ARATH (Probable polyamine transporter At3g19553 n=28 Tax=Brassicaceae TaxID=3700 RepID=PHSD_ARATH)

HSP 1 Score: 228 bits (580), Expect = 9.790e-66
Identity = 121/250 (48.40%), Postives = 166/250 (66.40%), Query Frame = 3
Query:    3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAF 752
            NLNYWD  ++ AGEVD PGKT+P+ALF  ++LV+    +P++ GTG+ + + + +             W DGYFA+V   I G WL  W   AAA +N+GLFEAEMSSDAFQL+GM+E GMLPA FA+R  YG   ++I+ S+TGV FL  + FQ IIE LN LY    LLEFAAFVKLR+   DL+RPY++P  T GV +L LP S+ V+L+  L++  T+ +SG+ +++G  +YP L L   ++W  F
Sbjct:  212 NLNYWDKASTLAGEVDRPGKTFPKALFGAVLLVMGSYLIPLMAGTGALSSSTSGE-------------WSDGYFAEVGMLIGGVWLKGWIQAAAAMSNLGLFEAEMSSDAFQLLGMSEIGMLPAFFAQRSKYGTPTISILCSATGVIFLSWMSFQEIIEFLNFLYALGMLLEFAAFVKLRIKKPDLHRPYRVPLNTFGVSMLCLPPSLLVILVMVLAAPKTFLISGVIIVLGFCLYPFLTLVKEKQWARF 448          
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: A0A5S9XDT9_ARATH (Uncharacterized protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A5S9XDT9_ARATH)

HSP 1 Score: 228 bits (581), Expect = 1.770e-65
Identity = 121/250 (48.40%), Postives = 166/250 (66.40%), Query Frame = 3
Query:    3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAF 752
            NLNYWD  ++ AGEVD PGKT+P+ALF  ++LV+    +P++ GTG+ + + + +             W DGYFA+V   I G WL  W   AAA +N+GLFEAEMSSDAFQL+GM+E GMLPA FA+R  YG   ++I+ S+TGV FL  + FQ IIE LN LY    LLEFAAFVKLR+   DL+RPY++P  T GV +L LP S+ V+L+  L++  T+ +SG+ +++G  +YP L L   ++W  F
Sbjct:  251 NLNYWDKASTLAGEVDRPGKTFPKALFGAVLLVMGSYLIPLMAGTGALSSSTSGE-------------WSDGYFAEVGMLIGGVWLKGWIQAAAAMSNLGLFEAEMSSDAFQLLGMSEIGMLPAFFAQRSKYGTPTISILCSATGVIFLSWMSFQEIIEFLNFLYALGMLLEFAAFVKLRIKKPDLHRPYRVPLNTFGVSMLCLPPSLLVILVMVLAAPKTFLISGVIIVLGFCLYPFLTLVKEKQWATF 487          
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: A0A8J5KLE9_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KLE9_ZINOF)

HSP 1 Score: 228 bits (582), Expect = 2.440e-65
Identity = 132/272 (48.53%), Postives = 169/272 (62.13%), Query Frame = 3
Query:    3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAFRVT-------TLHEGNIVATDH 797
            NLNYWDS ++ AGEV NP KT PR+LF  ++LVV     P+ VGTG+  V   A              W DGYF+DVA A+ G WL  W   AAA +N+G+F AEMSSD++QL+GMAERGMLP AFA+R  +G   L I+ S++GV  L  L FQ I+   N LYCF  L+EFAAFV+LR+ H    RPYKIP GT+G  L+L+P +V +L++ +LSS     VSG A+ +G  + PGLQ A R+RW  F V        T+      ATDH
Sbjct:  276 NLNYWDSISTLAGEVSNPAKTLPRSLFYAVILVVSAYLFPLFVGTGALPVDRDA--------------WADGYFSDVALAVGGPWLSWWVRAAAAVSNMGMFVAEMSSDSYQLLGMAERGMLPEAFARRSRHGTPLLGILFSASGVVLLSWLSFQEIVAAENFLYCFGMLMEFAAFVRLRMKHPTAARPYKIPLGTVGCVLMLVPPTVLILVVLALSSLNVALVSGGAVALGLVLRPGLQWAERRRWLKFSVNPELADFCTVAGETTNATDH 533          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAA3_9PHAE3.210e-12472.83PHS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
UPI00053CA08C4.520e-6750.80probable polyamine transporter At3g19553 n=1 Tax=T... [more]
A0A7I8K7T1_SPIIN7.560e-6747.91Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A2I4F7X8_JUGRE4.740e-6650.40probable polyamine transporter At3g19553 n=9 Tax=F... [more]
A0A6I9SHE1_ELAGV6.640e-6648.83probable polyamine transporter At3g19553 isoform X... [more]
A0A7N0TMI3_KALFE6.820e-6650.40Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
D8TFT1_SELML6.980e-6651.60Uncharacterized protein LAT2-1 n=2 Tax=Selaginella... [more]
PHSD_ARATH9.790e-6648.40Probable polyamine transporter At3g19553 n=28 Tax=... [more]
A0A5S9XDT9_ARATH1.770e-6548.40Uncharacterized protein n=1 Tax=Arabidopsis thalia... [more]
A0A8J5KLE9_ZINOF2.440e-6548.53Uncharacterized protein n=2 Tax=Zingiber officinal... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69248contigH-elongata_contig69248:56..2111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.5
Seed ortholog evalue2.1e-86
Seed eggNOG ortholog2880.D7FNQ0
Preferred namePUT1
KEGG koko:K11584
KEGG Pathwayko03015,ko04071,ko04113,ko04114,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04113,map04114,map04151,map04152,map04261,map04728,map05165
GOsGO:0002376,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006082,GO:0006520,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0006928,GO:0006950,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0015075,GO:0015171,GO:0015179,GO:0015203,GO:0015291,GO:0015297,GO:0015318,GO:0015695,GO:0015696,GO:0015711,GO:0015807,GO:0015839,GO:0015846,GO:0015849,GO:0016020,GO:0016021,GO:0016043,GO:0016477,GO:0019752,GO:0022607,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0040011,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0048870,GO:0050896,GO:0050900,GO:0051179,GO:0051234,GO:0051674,GO:0055085,GO:0065003,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0098656,GO:1901564,GO:1902047,GO:1902475,GO:1903825,GO:1905039
EggNOG free text desc.L-alpha-amino acid transmembrane transport
EggNOG OGsCOG0531@1,KOG1287@2759
Ec32 ortholog descriptionAmino acid/polyamine transporter I
Ec32 orthologEc-01_004690.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Hectar predicted targeting categorysignal peptide
Exons3
Model size1365
Cds size729
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69248.14573.1prot_H-elongata_contig69248.14573.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69248 145..1564 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.7176487-UTR-H-elongata_contig69248:55..1441622931089.7176487-UTR-H-elongata_contig69248:55..144Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69248 56..144 +
1691679693.6208239-UTR-H-elongata_contig69248:55..1441691679693.6208239-UTR-H-elongata_contig69248:55..144Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69248 56..144 +
1622931089.8047485-UTR-H-elongata_contig69248:1564..21111622931089.8047485-UTR-H-elongata_contig69248:1564..2111Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69248 1565..2111 +
1691679693.6568272-UTR-H-elongata_contig69248:1564..21111691679693.6568272-UTR-H-elongata_contig69248:1564..2111Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69248 1565..2111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.7471828-CDS-H-elongata_contig69248:144..4051622931089.7471828-CDS-H-elongata_contig69248:144..405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69248 145..405 +
1691679693.6315954-CDS-H-elongata_contig69248:144..4051691679693.6315954-CDS-H-elongata_contig69248:144..405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69248 145..405 +
1622931089.7664835-CDS-H-elongata_contig69248:677..8221622931089.7664835-CDS-H-elongata_contig69248:677..822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69248 678..822 +
1691679693.6401436-CDS-H-elongata_contig69248:677..8221691679693.6401436-CDS-H-elongata_contig69248:677..822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69248 678..822 +
1622931089.7796857-CDS-H-elongata_contig69248:1241..15641622931089.7796857-CDS-H-elongata_contig69248:1241..1564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69248 1242..1564 +
1691679693.6485777-CDS-H-elongata_contig69248:1241..15641691679693.6485777-CDS-H-elongata_contig69248:1241..1564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69248 1242..1564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69248.14573.1

>prot_H-elongata_contig69248.14573.1 ID=prot_H-elongata_contig69248.14573.1|Name=mRNA_H-elongata_contig69248.14573.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp
MVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVAT
AIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKR
GPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKL
RVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAM
LIGCAMYPGLQLANRQRWCAFRVTTLHEGNIVATDHLTTCME*
back to top

mRNA from alignment at H-elongata_contig69248:56..2111+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69248.14573.1 ID=mRNA_H-elongata_contig69248.14573.1|Name=mRNA_H-elongata_contig69248.14573.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2056bp|location=Sequence derived from alignment at H-elongata_contig69248:56..2111+ (Himanthalia elongata Himel1 dioecious)
GGAACCTCAACTATTGGGACTCCACGGCATCTTTTGCTGGTGAGGTGGAT AATCCGGGGAAAACTTATCCTCGCGCGCTGTTTGCTTGTATGGTTCTAGT GGTCCTTTGTAATGGTCTACCCGTGCTTGTGGGCACGGGGTCGGCAGCTG TAGCTGCCGCCGCTGATGAGGTGACTGGCAGGACGGGGCAGGGGCGTTGG AGTTTGTGGGTGGATGGGTACTTCGCTGACGTAGCGACGGCCATCGCGGG GCGATGGCTAGGGGTCTGGGAGGTGGTTGCAGCGGCAGCGGCCAACATCG GTTTGTTCGAGGCGGAGATGAGCTCCGACGCCTTCCAGCTCATGGGAATG GTGAGGCTCACGCGACGACAAAGAAACACGTACTTCCCCCCCCCCCGCTT GTTTTGATGACTTCGGTGCTGTGATGCTGCGGTTTGGGGCTTGGTACTCG ATCATATGAACGCAAAGTTACCGTGCTGTTGGGAGGGGGTATCTACAAAT GGTGTGGAATTGTTTTGTCACAGCTGTAGGCATTTTTGTAACTTACGGTT TGTGTTTCCTTCCCCCTTTGGGCCCATTTGGGAACGTGTCAACGCTCGAC ACCGGCGGTGCTCTTCGCCTAGGCCGAGCGCGGAATGCTCCCGGCGGCGT TCGCCAAACGAGGACCCTACGGTATCTCCGGGCTTGCCATTATCGCCTCC TCAACGGGAGTGGCTTTCCTGGGACTGCTGGATTTCCAGGCGATAATCGA GATCCTTAACCTTCTTTGTAAGTTGTTTCCTCCCGGGGTGTCCTGTGTGG GCATTGACGGCGGCTAGTGGTTGCATCGTCTTGCAAAGAAATCTCCGTGA CGGCGTTCTTGACGCGGGGGGTAGTACTAGTTCGAACAGCTCGAATTGTG TCGCGATGGCTGTGTCCCCTCGATAGGTTATCTGAACGACCCTATAAATA GAGCGAGTAGCTGCCATGTGATGGCTCGGCTGGTTCAGGCGTTGCGTTGC CGTGAGAATGCACCCAAGATGGGTATAGGCGATGTGCACCCTGCCGATGC TTTACTCGAGCCTCACGATTCTGCGTGTTCCCGCTAACGCCGAAACGCCC GACGGCGCAGACTCGTCTTTTAAAACCATCCCTGGTTCTGTCCGCGGTTG TCTCTTGTTACTCGTGTTCGGGTCCTCTCGCCACAGACTGCTTCGCACAG CTTCTGGAGTTCGCGGCTTTCGTGAAGCTGCGTGTGTCCCACCGGGACCT GTACAGACCGTACAAGATCCCCGCTGGCACCATAGGTGTGTGCCTCTTGC TGCTGCCGGCGTCGGTGTTTGTCCTCCTTCTAGCCTCTTTGTCGTCGAGG CTAACATGGGCCGTGTCCGGAATCGCCATGCTGATCGGGTGCGCGATGTA TCCGGGTCTTCAGCTCGCGAATCGTCAACGGTGGTGTGCGTTCCGCGTCA CGACGCTTCACGAGGGCAATATAGTCGCCACCGACCACTTGACGACTTGT ATGGAGTAGCGTTAACTCAGGAGGGGAGAAGGGGGCGAGGGGTAGCGTTA TCTCAAACGTTTTTTTACTTTGTAAGGACTTTAGTTAGCAGCTATATGCG TACAGCCACGGCGTCGAGATTTTCTCAAAGCAGCCAGGGAAAGTAGCAGG CCATCGCGTCGTAACCGTCGAGAAACTAGCTGTGCGATTGGTTTCCGAAA TGTTTCGGAAAGAGGCCTGATATAGCATAGTGCCGTCGAGGGTGTGTGGG TTACGCGCTCCAGCCTTTTTTCCCCCCAGATTTGGATCGTAATAGATTGC GTTGAAATCCCATTTTTTATGTACAGTTGAAGCGCCTCCCGGTAGGCTCT TGTAATTTTTTATCCTTCCGCGCGCTCGACGCAGCGTGGCGTTTTTTTAA GCAGCTTTTGCGTAGATTCTCCATCAGAAATAGTCGTGAAACGTAGGCAA TGGTGGGCTGCACTACGAAGTCTGCACCGATGAAATTTTGACACAGTAGG TGAATTCGATAAAAACCCCCCCGAATTATATTATAAAAGTTGTAAAAAGG CGTGTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig69248:56..2111+

>mRNA_H-elongata_contig69248.14573.1 ID=mRNA_H-elongata_contig69248.14573.1|Name=mRNA_H-elongata_contig69248.14573.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig69248:56..2111+ (Himanthalia elongata Himel1 dioecious)
ATGGTTCTAGTGGTCCTTTGTAATGGTCTACCCGTGCTTGTGGGCACGGG
GTCGGCAGCTGTAGCTGCCGCCGCTGATGAGGTGACTGGCAGGACGGGGC
AGGGGCGTTGGAGTTTGTGGGTGGATGGGTACTTCGCTGACGTAGCGACG
GCCATCGCGGGGCGATGGCTAGGGGTCTGGGAGGTGGTTGCAGCGGCAGC
GGCCAACATCGGTTTGTTCGAGGCGGAGATGAGCTCCGACGCCTTCCAGC
TCATGGGAATGATGGTTCTAGTGGTCCTTTGTAATGGTCTACCCGTGCTT
GTGGGCACGGGGTCGGCAGCTGTAGCTGCCGCCGCTGATGAGGTGACTGG
CAGGACGGGGCAGGGGCGTTGGAGTTTGTGGGTGGATGGGTACTTCGCTG
ACGTAGCGACGGCCATCGCGGGGCGATGGCTAGGGGTCTGGGAGGTGGTT
GCAGCGGCAGCGGCCAACATCGGTTTGTTCGAGGCGGAGATGAGCTCCGA
CGCCTTCCAGCTCATGGGAATGGCCGAGCGCGGAATGCTCCCGGCGGCGT
TCGCCAAACGAGGACCCTACGGTATCTCCGGGCTTGCCATTATCGCCTCC
TCAACGGGAGTGGCTTTCCTGGGACTGCTGGATTTCCAGGCGATAATCGA
GATCCTTAACCTTCTTTGCCGAGCGCGGAATGCTCCCGGCGGCGTTCGCC
AAACGAGGACCCTACGGTATCTCCGGGCTTGCCATTATCGCCTCCTCAAC
GGGAGTGGCTTTCCTGGGACTGCTGGATTTCCAGGCGATAATCGAGATCC
TTAACCTTCTTTACTGCTTCGCACAGCTTCTGGAGTTCGCGGCTTTCGTG
AAGCTGCGTGTGTCCCACCGGGACCTGTACAGACCGTACAAGATCCCCGC
TGGCACCATAGGTGTGTGCCTCTTGCTGCTGCCGGCGTCGGTGTTTGTCC
TCCTTCTAGCCTCTTTGTCGTCGAGGCTAACATGGGCCGTGTCCGGAATC
GCCATGCTGATCGGGTGCGCGATGTATCCGGGTCTTCAGCTCGCGAATCG
TCAACGGTGGTGTGCGTTCCGCGTCACGACGCTTCACGAGGGCAATATAG
TCGCCACCGACCACTTGACGACTTGTATGGAGTAGACTGCTTCGCACAGC
TTCTGGAGTTCGCGGCTTTCGTGAAGCTGCGTGTGTCCCACCGGGACCTG
TACAGACCGTACAAGATCCCCGCTGGCACCATAGGTGTGTGCCTCTTGCT
GCTGCCGGCGTCGGTGTTTGTCCTCCTTCTAGCCTCTTTGTCGTCGAGGC
TAACATGGGCCGTGTCCGGAATCGCCATGCTGATCGGGTGCGCGATGTAT
CCGGGTCTTCAGCTCGCGAATCGTCAACGGTGGTGTGCGTTCCGCGTCAC
GACGCTTCACGAGGGCAATATAGTCGCCACCGACCACTTGACGACTTGTA
TGGAGTAG
back to top