mRNA_H-elongata_contig69248.14573.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: A0A6H5LAA3_9PHAE (PHS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAA3_9PHAE) HSP 1 Score: 382 bits (980), Expect = 3.210e-124 Identity = 193/265 (72.83%), Postives = 226/265 (85.28%), Query Frame = 3
Query: 3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAFRVTTLHEGNIVATDH 797
NLNYWDS ASFAGEV+NPG+TYPRAL AC+ LVVLC GLP+ VGTG+A+VA AA + G GRWSLW DGYFA+VA AI GRWLGVW V+AAAAANIGLFEAEM+SDA QLMGMAERGMLPA FAKRGP+GIS LAI+ASSTGVAFLGLL F+ I+EILNLLYCFA++LEF AF+KLRVSHRD++RPY+IP GT+GVCLLLLPA+ FVLLLA+ SS +TW VSG+A+LIG +YPGL LA R++WC FR T +EG++ D+
Sbjct: 305 NLNYWDSAASFAGEVENPGRTYPRALVACVALVVLCYGLPIFVGTGAASVATAAAANSAGEG-GRWSLWEDGYFAEVAEAITGRWLGVWVVLAAAAANIGLFEAEMTSDALQLMGMAERGMLPAVFAKRGPHGISTLAIVASSTGVAFLGLLGFETIVEILNLLYCFAEILEFVAFIKLRVSHRDMHRPYEIPLGTVGVCLLLLPAACFVLLLAAFSSVITWVVSGVALLIGVGLYPGLLLAKREKWCEFRSATRYEGDVDGADN 568
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: UPI00053CA08C (probable polyamine transporter At3g19553 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053CA08C) HSP 1 Score: 231 bits (589), Expect = 4.520e-67 Identity = 127/250 (50.80%), Postives = 168/250 (67.20%), Query Frame = 3
Query: 3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAF 752
NLNYWD ++ AGEV+NPG+T+P+ALF ++LV+ +P++ GTG+ A ++ +DE W DGYFA V AI G L VW A+A +N+GLFEAEMSSDAFQL+GM+E GMLPA FA+R +G ++I+ S+TGV FL L FQ IIE LN LY LLEFAAFV+LR+ DL+RPYK+P GT GV LL P S+ ++L+ L+S T+ VSG +L G +YP L L +RW +F
Sbjct: 211 NLNYWDKASTLAGEVENPGQTFPKALFGAVLLVICSYLVPLMAGTGALA-SSLSDE------------WSDGYFAQVGMAIGGVGLSVWIQAASALSNLGLFEAEMSSDAFQLLGMSEIGMLPAFFARRSKHGTPTISILCSATGVIFLSWLSFQEIIEFLNFLYALGMLLEFAAFVRLRIKKADLHRPYKVPLGTCGVALLCFPPSLLLILVMVLASLRTFLVSGAVILFGFCLYPFLSLVKEKRWLSF 447
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: A0A7I8K7T1_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K7T1_SPIIN) HSP 1 Score: 231 bits (589), Expect = 7.560e-67 Identity = 126/263 (47.91%), Postives = 167/263 (63.50%), Query Frame = 3
Query: 3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAFRVTTLHEGNIVAT 791
NLNYWD ++ AGEV++P +T+PRA++ + LVV +P++ GTG A D + + W DGYFA V I G WL +W AA +N+GLFEAEM+SDAFQL+GM+E GMLPA FA R YG ++I+ S+TGV L L FQ IIE LN LY LLEFAAFV+LR+ DL+RPY+IP GT GV + LP S+ ++L+ SL+S T+ VSGI +L G +YPG++ A +RW F T + G T
Sbjct: 215 NLNYWDKASTLAGEVEDPSRTFPRAIYGAVALVVASYLVPLMAGTG------ALD-------RSKTEEWSDGYFAQVGLLIGGVWLKLWIQAAAGMSNMGLFEAEMTSDAFQLLGMSEIGMLPAIFANRSKYGTPTISILCSATGVLLLSWLSFQQIIEFLNFLYALGMLLEFAAFVRLRIKKPDLHRPYRIPLGTFGVTVFCLPPSLLIVLVMSLASARTFIVSGIVILFGFLLYPGIEYAKERRWAVFYSTPMSSGGYSDT 464
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: A0A2I4F7X8_JUGRE (probable polyamine transporter At3g19553 n=9 Tax=Fagales TaxID=3502 RepID=A0A2I4F7X8_JUGRE) HSP 1 Score: 229 bits (584), Expect = 4.740e-66 Identity = 126/250 (50.40%), Postives = 163/250 (65.20%), Query Frame = 3
Query: 3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAF 752
NLNYWD ++ AGEV+NP KT+P+ALF +VLVVL +P+L GTG A +A E W DGYFA+V I G WL W AAA +N+GLFEAEMS DAFQL+GM+E GMLPA FA R YG ++I+ S+TGV FL + FQ I+E LN LY LLEFAAF+KLR+ DL+RPYK+P T GV +L LP ++ ++L+ L+S T+ VSG+ M+ G +YP L A ++W F
Sbjct: 211 NLNYWDKASTLAGEVENPSKTFPKALFGAVVLVVLSYLIPLLAGTG--ATKSAPSE------------WSDGYFAEVGMLIGGYWLKWWIQAAAAMSNMGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTISILCSATGVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLPPALMLVLVMCLASAKTFLVSGVVMITGFLLYPALVHAKDRKWTRF 446
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: A0A6I9SHE1_ELAGV (probable polyamine transporter At3g19553 isoform X1 n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9SHE1_ELAGV) HSP 1 Score: 229 bits (583), Expect = 6.640e-66 Identity = 125/256 (48.83%), Postives = 167/256 (65.23%), Query Frame = 3
Query: 3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAFRVTTLH 770
NLNYWD ++ AGEV++P +T+PRAL+ +VLVV +P+L GTG A D RTG+ W DGYFA V I G WL W AAA +N+GLF+AEMSSD+FQL+GM+E GMLPA FA R YG ++I+ S++G+ FL + FQ I+E LN LY LLEFAAF+KLR+ DL+RPYK+P GT+G LL LP + ++L+ L+S T+ VSG ML G +YP ++ R+ W F T++H
Sbjct: 213 NLNYWDKASTLAGEVEDPTRTFPRALYGAVVLVVASYLIPLLAGTG------AMDG--SRTGE-----WTDGYFAQVGMVIGGPWLRWWIQAAAAMSNMGLFQAEMSSDSFQLLGMSEMGMLPAFFAIRSKYGTPTISILFSASGIIFLSWMSFQEILEFLNFLYALGMLLEFAAFIKLRIKKPDLHRPYKVPVGTLGAVLLCLPPAFLLILVMCLASARTFIVSGSVMLFGALLYPAIEYMKRRNWVKFISTSVH 455
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: A0A7N0TMI3_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TMI3_KALFE) HSP 1 Score: 228 bits (582), Expect = 6.820e-66 Identity = 126/250 (50.40%), Postives = 165/250 (66.00%), Query Frame = 3
Query: 3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAF 752
NLNYWD ++ AGEV+NP +T+P+AL+A +VLV+ +P+L GTG+ + +G G WS DGYFA+V I G WL W AAA +N+GLFEAEMS+DAFQL+GM+E GMLPA FA R YG +I+ S+TGV FL + FQ IIE LN LY LLEFAAF+KLR++ DL+RPY+IP T GV +L LP S+ +LL+ L+S T VSG+ +L+G +YP L A + W F
Sbjct: 212 NLNYWDKASTLAGEVENPARTFPKALYAAVVLVMCSYLIPLLAGTGALS-----------SGSGEWS---DGYFAEVGMLIGGFWLKSWIQAAAAMSNLGLFEAEMSADAFQLLGMSEIGMLPAIFASRSKYGTPTFSILCSATGVIFLSWMSFQEIIEFLNFLYAIGMLLEFAAFIKLRITKPDLHRPYRIPLQTFGVIMLCLPPSLLLLLVMCLASFKTLLVSGVVILVGMVLYPTLIRAKDRNWIKF 447
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: D8TFT1_SELML (Uncharacterized protein LAT2-1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TFT1_SELML) HSP 1 Score: 228 bits (581), Expect = 6.980e-66 Identity = 129/250 (51.60%), Postives = 165/250 (66.00%), Query Frame = 3
Query: 3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAF 752
NLNYWDS ++ GEVD P +T PRAL A +VLVV LP+L GTG+A G LW DGYFA +A I G WL W +AA +N G+FEAEMSSD+FQL+GMAERG+LPAAFA+R YG L I+ S+TGV L L+FQ IIEILN LYC LLEFAAFV LR+ +L RPYK+P GTIGV ++ L SV ++++ ++S T +S + L+G A+YP +QLA ++ W +F
Sbjct: 205 NLNYWDSVSTLVGEVDRPHETVPRALAAALVLVVASYLLPLLAGTGAAP-------------PGDRKLWADGYFAHIALKIGGGWLKWWVELAALLSNAGMFEAEMSSDSFQLLGMAERGILPAAFARRSRYGTPVLGILFSATGVILLSWLNFQEIIEILNFLYCCGMLLEFAAFVWLRIKQPNLVRPYKVPLGTIGVTVMCLVPSVLLVVVMCIASAKTVVLSVVFSLVGFAVYPAIQLAKKKSWLSF 441
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: PHSD_ARATH (Probable polyamine transporter At3g19553 n=28 Tax=Brassicaceae TaxID=3700 RepID=PHSD_ARATH) HSP 1 Score: 228 bits (580), Expect = 9.790e-66 Identity = 121/250 (48.40%), Postives = 166/250 (66.40%), Query Frame = 3
Query: 3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAF 752
NLNYWD ++ AGEVD PGKT+P+ALF ++LV+ +P++ GTG+ + + + + W DGYFA+V I G WL W AAA +N+GLFEAEMSSDAFQL+GM+E GMLPA FA+R YG ++I+ S+TGV FL + FQ IIE LN LY LLEFAAFVKLR+ DL+RPY++P T GV +L LP S+ V+L+ L++ T+ +SG+ +++G +YP L L ++W F
Sbjct: 212 NLNYWDKASTLAGEVDRPGKTFPKALFGAVLLVMGSYLIPLMAGTGALSSSTSGE-------------WSDGYFAEVGMLIGGVWLKGWIQAAAAMSNLGLFEAEMSSDAFQLLGMSEIGMLPAFFAQRSKYGTPTISILCSATGVIFLSWMSFQEIIEFLNFLYALGMLLEFAAFVKLRIKKPDLHRPYRVPLNTFGVSMLCLPPSLLVILVMVLAAPKTFLISGVIIVLGFCLYPFLTLVKEKQWARF 448
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: A0A5S9XDT9_ARATH (Uncharacterized protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A5S9XDT9_ARATH) HSP 1 Score: 228 bits (581), Expect = 1.770e-65 Identity = 121/250 (48.40%), Postives = 166/250 (66.40%), Query Frame = 3
Query: 3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAF 752
NLNYWD ++ AGEVD PGKT+P+ALF ++LV+ +P++ GTG+ + + + + W DGYFA+V I G WL W AAA +N+GLFEAEMSSDAFQL+GM+E GMLPA FA+R YG ++I+ S+TGV FL + FQ IIE LN LY LLEFAAFVKLR+ DL+RPY++P T GV +L LP S+ V+L+ L++ T+ +SG+ +++G +YP L L ++W F
Sbjct: 251 NLNYWDKASTLAGEVDRPGKTFPKALFGAVLLVMGSYLIPLMAGTGALSSSTSGE-------------WSDGYFAEVGMLIGGVWLKGWIQAAAAMSNLGLFEAEMSSDAFQLLGMSEIGMLPAFFAQRSKYGTPTISILCSATGVIFLSWMSFQEIIEFLNFLYALGMLLEFAAFVKLRIKKPDLHRPYRVPLNTFGVSMLCLPPSLLVILVMVLAAPKTFLISGVIIVLGFCLYPFLTLVKEKQWATF 487
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Match: A0A8J5KLE9_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KLE9_ZINOF) HSP 1 Score: 228 bits (582), Expect = 2.440e-65 Identity = 132/272 (48.53%), Postives = 169/272 (62.13%), Query Frame = 3
Query: 3 NLNYWDSTASFAGEVDNPGKTYPRALFACMVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATAIAGRWLGVWEVVAAAAANIGLFEAEMSSDAFQLMGMAERGMLPAAFAKRGPYGISGLAIIASSTGVAFLGLLDFQAIIEILNLLYCFAQLLEFAAFVKLRVSHRDLYRPYKIPAGTIGVCLLLLPASVFVLLLASLSSRLTWAVSGIAMLIGCAMYPGLQLANRQRWCAFRVT-------TLHEGNIVATDH 797
NLNYWDS ++ AGEV NP KT PR+LF ++LVV P+ VGTG+ V A W DGYF+DVA A+ G WL W AAA +N+G+F AEMSSD++QL+GMAERGMLP AFA+R +G L I+ S++GV L L FQ I+ N LYCF L+EFAAFV+LR+ H RPYKIP GT+G L+L+P +V +L++ +LSS VSG A+ +G + PGLQ A R+RW F V T+ ATDH
Sbjct: 276 NLNYWDSISTLAGEVSNPAKTLPRSLFYAVILVVSAYLFPLFVGTGALPVDRDA--------------WADGYFSDVALAVGGPWLSWWVRAAAAVSNMGMFVAEMSSDSYQLLGMAERGMLPEAFARRSRHGTPLLGILFSASGVVLLSWLSFQEIVAAENFLYCFGMLMEFAAFVRLRMKHPTAARPYKIPLGTVGCVLMLVPPTVLILVVLALSSLNVALVSGGAVALGLVLRPGLQWAERRRWLKFSVNPELADFCTVAGETTNATDH 533 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69248.14573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69248.14573.1 >prot_H-elongata_contig69248.14573.1 ID=prot_H-elongata_contig69248.14573.1|Name=mRNA_H-elongata_contig69248.14573.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp MVLVVLCNGLPVLVGTGSAAVAAAADEVTGRTGQGRWSLWVDGYFADVATback to top mRNA from alignment at H-elongata_contig69248:56..2111+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69248.14573.1 ID=mRNA_H-elongata_contig69248.14573.1|Name=mRNA_H-elongata_contig69248.14573.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2056bp|location=Sequence derived from alignment at H-elongata_contig69248:56..2111+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69248:56..2111+ >mRNA_H-elongata_contig69248.14573.1 ID=mRNA_H-elongata_contig69248.14573.1|Name=mRNA_H-elongata_contig69248.14573.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig69248:56..2111+ (Himanthalia elongata Himel1 dioecious)back to top |