mRNA_H-elongata_contig69131.14559.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69131.14559.1
Unique NamemRNA_H-elongata_contig69131.14559.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69131.14559.1 vs. uniprot
Match: D7FM86_ECTSI (Mitochondrial fission process protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM86_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.790e-39
Identity = 70/117 (59.83%), Postives = 89/117 (76.07%), Query Frame = 1
Query:    1 LLTATDAISIAYVSGDTMDKAYKEYSEGRGKLAAAKMGLDVMLWQLLASVAVPGLTINLV--AMKATMASESVTRVVPKVARKWAPTAIGLGIIPLIVHPIDDAVTLAMDSSIRKWL 345
            L+  + A+SIAYV GDT+DKAYK+Y+ G+G +   K GLDV+LWQ LASVAVPGLTIN+   A  A MAS+    ++PK+ARKW PTA+GLGIIP IV PIDDA++  MD ++R WL
Sbjct:  139 LVVPSYAVSIAYVCGDTVDKAYKDYTNGKGMVTVGKTGLDVLLWQSLASVAVPGLTINIAVKAASAAMASDHTKSLLPKLARKWVPTAVGLGIIPFIVTPIDDAISWGMDKTVRTWL 255          
BLAST of mRNA_H-elongata_contig69131.14559.1 vs. uniprot
Match: K3W7W3_GLOUD (Mitochondrial fission process protein 1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7W3_GLOUD)

HSP 1 Score: 107 bits (266), Expect = 5.210e-27
Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 LLTATDAISIAYVSGDTMDKAYK--------EYSEGRGKLAAAKMGLDVMLWQLLASVAVPGLTINLVAMKATMASESVTRVVPKVARKWAPTAIGLGIIPLIVHPIDDAVTLAMDSSIRKW 342
            L+  + A++ AYV GDT+DKA K          S+G+ +   A   +D +LWQ +ASVA+PG TIN V   ++ A+E   + +P V R+WAPTAIGLG+IPLI+HPID  V   MDS+ RKW
Sbjct:   43 LVAPSYAVAFAYVLGDTLDKASKAEARAQTQRLSDGKHRAVVADATVDTLLWQTMASVAIPGFTINRVVALSSAATERTVKNLPLV-RRWAPTAIGLGVIPLIIHPIDHLVDQIMDSTTRKW 163          
BLAST of mRNA_H-elongata_contig69131.14559.1 vs. uniprot
Match: A0A6A3XT91_9STRA (Mitochondrial fission process protein 1 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XT91_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.340e-23
Identity = 51/122 (41.80%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 LLTATDAISIAYVSGDTMDKAYKEYSEG--------RGKLAAAKMGLDVMLWQLLASVAVPGLTINLVAMKATMASESVTRVVPKVARKWAPTAIGLGIIPLIVHPIDDAVTLAMDSSIRKW 342
            L+  +  ++  YV GDT DKA K +++         +     A   +D + WQ +ASV +PG TIN V   ++ A +   +  P V R+WAPTAIGLG+IPLI+HPID  V +AMD ++RKW
Sbjct:   38 LVVPSYLVAFGYVLGDTFDKANKAHAKAVAEGVSTRKRSAVVADATIDTLAWQTMASVVIPGFTINRVVAMSSFAVQRAVKTSP-VVRRWAPTAIGLGVIPLIIHPIDSFVDVAMDQTVRKW 158          
BLAST of mRNA_H-elongata_contig69131.14559.1 vs. uniprot
Match: H3G9A4_PHYRM (Mitochondrial fission process protein 1 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9A4_PHYRM)

HSP 1 Score: 97.1 bits (240), Expect = 3.510e-23
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 1
Query:   22 ISIAYVSGDTMDKAYKEYSEG--------RGKLAAAKMGLDVMLWQLLASVAVPGLTINLVAMKATMASESVTRVVPKVARKWAPTAIGLGIIPLIVHPIDDAVTLAMDSSIRKW 342
            ++  YV GDT DKA K +++         +     A   +D + WQ +ASV +PGLTIN V   + +A +   +  P V R+WAPTAIGLG+IPLI+HPID  V  AMD S+RKW
Sbjct:   42 VAFGYVLGDTFDKASKAHTKAVDEGVSSRKRNALVADATIDTLAWQTMASVVIPGLTINRVVALSCVAVQRAAKNSP-VVRRWAPTAIGLGVIPLIIHPIDSFVDAAMDKSLRKW 155          
BLAST of mRNA_H-elongata_contig69131.14559.1 vs. uniprot
Match: A0A8K1FFS0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFS0_PYTOL)

HSP 1 Score: 96.7 bits (239), Expect = 5.090e-23
Identity = 54/123 (43.90%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 LLTATDAISIAYVSGDTMDKAYK--------EYSEGRGKLAAAKMGLDVMLWQLLASVAVPGLTIN-LVAMKATMASESVTRVVPKVARKWAPTAIGLGIIPLIVHPIDDAVTLAMDSSIRKW 342
            L+  +  ++  YV GDT DKA K        E   G+     A   +D +LWQ +ASV +PG TIN +VA+ +T+A +++ +    V R+WAPTAIGLG+IPLI+HPID  V   MD++ RKW
Sbjct:   36 LVVPSYVVAFGYVLGDTYDKATKASQVADKQELPSGKLTALVANATVDTLLWQTMASVVIPGFTINRVVALSSTIAQKTLQQ--SPVLRRWAPTAIGLGVIPLIIHPIDHFVDFLMDNTTRKW 156          
BLAST of mRNA_H-elongata_contig69131.14559.1 vs. uniprot
Match: A0A2D4CAK2_PYTIN (Mitochondrial fission process protein 1 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAK2_PYTIN)

HSP 1 Score: 95.9 bits (237), Expect = 1.310e-22
Identity = 55/123 (44.72%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 LLTATDAISIAYVSGDTMDKAYKEY--------SEGRGKLAAAKMGLDVMLWQLLASVAVPGLTIN-LVAMKATMASESVTRVVPKVARKWAPTAIGLGIIPLIVHPIDDAVTLAMDSSIRKW 342
            L+  +  ++  YV GDT DKA K +        SE +     A   +D +LWQ LASVA+PG TIN +VA+ A +A +++ +    V R+WAPTA+GLGIIPLI+HPID  V   MD + R+W
Sbjct:   47 LVVPSYLVAFGYVLGDTYDKATKAHALATTQGVSEQKRTALTANAAVDTLLWQSLASVAIPGFTINRVVALSAAVAEKTLKQ--SPVLRRWAPTALGLGIIPLIIHPIDSLVDNVMDRTTRQW 167          
BLAST of mRNA_H-elongata_contig69131.14559.1 vs. uniprot
Match: A0A833T3X4_PHYIN (Mitochondrial fission process protein 1 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T3X4_PHYIN)

HSP 1 Score: 95.1 bits (235), Expect = 1.940e-22
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   22 ISIAYVSGDTMDKAYKEY--------SEGRGKLAAAKMGLDVMLWQLLASVAVPGLTINLVAMKATMASESVTRVVPKVARKWAPTAIGLGIIPLIVHPIDDAVTLAMDSSIRKW 342
            ++  YV GDT DKA K +        S  +     A   +D + WQ +ASV +PG TIN V   + +  +  T+ +  V R+WAPTAIGLG+IPLI+HPID  V LAMD ++RKW
Sbjct:   42 VAFGYVLGDTFDKATKAHVKAVEQQVSRRKRNALVADATVDTLAWQTMASVVIPGFTINRVVATSVLMVQQETKNL-LVVRRWAPTAIGLGVIPLIIHPIDSLVDLAMDKTVRKW 155          
BLAST of mRNA_H-elongata_contig69131.14559.1 vs. uniprot
Match: A0A0W8D9G0_PHYNI (Mitochondrial fission process protein 1 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D9G0_PHYNI)

HSP 1 Score: 93.6 bits (231), Expect = 6.320e-22
Identity = 51/122 (41.80%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 LLTATDAISIAYVSGDTMDKAYKEYSEGRGKLAAAKMG--------LDVMLWQLLASVAVPGLTINLVAMKATMASESVTRVVPKVARKWAPTAIGLGIIPLIVHPIDDAVTLAMDSSIRKW 342
            L+  +  ++  YV GDT DKA K +++   +  +++          +D ++WQ +ASVA+PG TIN    +   A  S       V R+WAPTAIGLG+IPLI+HPID  V LAMD ++RKW
Sbjct:   36 LVVPSYLVAFGYVLGDTFDKATKAHAKAMEQRVSSRKRNALVVDATVDTLVWQTMASVAIPGFTIN----RVRAAKNS------PVVRRWAPTAIGLGVIPLIIHPIDSFVDLAMDKTVRKW 147          
BLAST of mRNA_H-elongata_contig69131.14559.1 vs. uniprot
Match: A0A329T1M2_9STRA (Mitochondrial fission process protein 1 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T1M2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.510e-21
Identity = 51/116 (43.97%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   22 ISIAYVSGDTMDKAYKEY---------SEGRGKLAAAKMGLDVMLWQLLASVAVPGLTINLVAMKATMASESVTRVVPKVARKWAPTAIGLGIIPLIVHPIDDAVTLAMDSSIRKW 342
            ++  YV GDT DKA K +         S  R  L A  + +D + WQ +ASV +PG TIN V   ++   +   +  P V R+W PTAIG+G+IPLI+HPID  V LAMD ++RKW
Sbjct:   43 VAFGYVLGDTFDKATKAHATAVDQQVSSRKRNALVADAI-IDTLAWQTMASVVIPGFTINRVVAMSSFVVQRAAKNSP-VVRRWTPTAIGVGVIPLIIHPIDSFVDLAMDKTVRKW 156          
BLAST of mRNA_H-elongata_contig69131.14559.1 vs. uniprot
Match: G4YFS8_PHYSP (Mitochondrial fission process protein 1 (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YFS8_PHYSP)

HSP 1 Score: 92.4 bits (228), Expect = 1.660e-21
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    1 LLTATDAISIAYVSGDTMDKAYKEYSEG--------RGKLAAAKMGLDVMLWQLLASVAVPGLTINLVAMKATMASESVTRVVPKVARKWAPTAIGLGIIPLIVHPIDDAVTLAMDSSIRK 339
            L+  +  ++  YV GDT DKA K +S+         +     A   +D + WQ +ASV +PG TIN V   ++ A +   +  P V R+WAPTAIGLG+IPLI+HPID  V  AMD ++RK
Sbjct:   34 LVVPSYLVAFGYVLGDTYDKASKAHSKAVAEGVSARKRNAVVADATIDTLAWQTMASVIIPGFTINRVVAMSSFAVQRAAKSSP-VVRRWAPTAIGLGVIPLIIHPIDSFVDAAMDKTVRK 153          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69131.14559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM86_ECTSI1.790e-3959.83Mitochondrial fission process protein 1 n=1 Tax=Ec... [more]
K3W7W3_GLOUD5.210e-2747.54Mitochondrial fission process protein 1 n=1 Tax=Gl... [more]
A0A6A3XT91_9STRA1.340e-2341.80Mitochondrial fission process protein 1 n=4 Tax=Ph... [more]
H3G9A4_PHYRM3.510e-2345.22Mitochondrial fission process protein 1 n=1 Tax=Ph... [more]
A0A8K1FFS0_PYTOL5.090e-2343.90Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CAK2_PYTIN1.310e-2244.72Mitochondrial fission process protein 1 n=2 Tax=Py... [more]
A0A833T3X4_PHYIN1.940e-2244.35Mitochondrial fission process protein 1 n=1 Tax=Ph... [more]
A0A0W8D9G0_PHYNI6.320e-2241.80Mitochondrial fission process protein 1 n=7 Tax=Ph... [more]
A0A329T1M2_9STRA1.510e-2143.97Mitochondrial fission process protein 1 n=2 Tax=Ph... [more]
G4YFS8_PHYSP1.660e-2142.15Mitochondrial fission process protein 1 (Fragment)... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69131contigH-elongata_contig69131:305..828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.5
Seed ortholog evalue1.2e-31
Seed eggNOG ortholog2880.D7FM86
Preferred nameMTFP1
KEGG koko:K17981
GOsGO:0000266,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048285,GO:0061024,GO:0071840
EggNOG free text desc.mitochondrial fission
EggNOG OGsKOG3945@1,KOG3945@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial 18kDa protein
Ec32 orthologEc-16_004700.1
Exons2
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931088.5080123-CDS-H-elongata_contig69131:304..4841622931088.5080123-CDS-H-elongata_contig69131:304..484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69131 305..484 +
1691679693.156515-CDS-H-elongata_contig69131:304..4841691679693.156515-CDS-H-elongata_contig69131:304..484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69131 305..484 +
1622931088.5217328-CDS-H-elongata_contig69131:660..8281622931088.5217328-CDS-H-elongata_contig69131:660..828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69131 661..828 +
1691679693.1742003-CDS-H-elongata_contig69131:660..8281691679693.1742003-CDS-H-elongata_contig69131:660..828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69131 661..828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69131.14559.1prot_H-elongata_contig69131.14559.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69131 305..828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69131.14559.1

>prot_H-elongata_contig69131.14559.1 ID=prot_H-elongata_contig69131.14559.1|Name=mRNA_H-elongata_contig69131.14559.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
LLTATDAISIAYVSGDTMDKAYKEYSEGRGKLAAAKMGLDVMLWQLLASV
AVPGLTINLVAMKATMASESVTRVVPKVARKWAPTAIGLGIIPLIVHPID
DAVTLAMDSSIRKWL*
back to top

mRNA from alignment at H-elongata_contig69131:305..828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69131.14559.1 ID=mRNA_H-elongata_contig69131.14559.1|Name=mRNA_H-elongata_contig69131.14559.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=524bp|location=Sequence derived from alignment at H-elongata_contig69131:305..828+ (Himanthalia elongata Himel1 dioecious)
TTGCTTACGGCAACAGACGCCATCAGCATTGCGTACGTGAGCGGCGACAC GATGGACAAGGCTTACAAAGAATACTCTGAAGGGCGAGGAAAGTTAGCCG CGGCTAAAATGGGTCTCGACGTCATGCTGTGGCAGTTACTGGCAAGCGTC GCGGTGCCGGGCTTGACCATCAACCTCGTGGTGAGGCACTGCCGTTTCGA GCGCTGAATTTATTCTCCACTCGTTCGACCTGGCCCCGGATATGTTTCCA TGATTTAGGCCTCGCGTCTGGTACGTATTCCCAGAGAGCTCGTTTCTTTT GAGCCGGCTTTGCCCTCCCGCCCACGGTGCGCGCTTCTCCTACGGACCAG GTGAAGGCAATGAAGGCCACAATGGCCAGTGAATCGGTCACGCGGGTGGT GCCAAAAGTCGCCAGAAAATGGGCTCCAACGGCCATTGGCTTGGGTATCA TTCCACTCATCGTGCATCCCATCGACGACGCGGTGACTCTGGCGATGGAT TCGTCGATCCGAAAGTGGCTATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig69131:305..828+

>mRNA_H-elongata_contig69131.14559.1 ID=mRNA_H-elongata_contig69131.14559.1|Name=mRNA_H-elongata_contig69131.14559.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig69131:305..828+ (Himanthalia elongata Himel1 dioecious)
TTGCTTACGGCAACAGACGCCATCAGCATTGCGTACGTGAGCGGCGACAC
GATGGACAAGGCTTACAAAGAATACTCTGAAGGGCGAGGAAAGTTAGCCG
CGGCTAAAATGGGTCTCGACGTCATGCTGTGGCAGTTACTGGCAAGCGTC
GCGGTGCCGGGCTTGACCATCAACCTCGTGTTGCTTACGGCAACAGACGC
CATCAGCATTGCGTACGTGAGCGGCGACACGATGGACAAGGCTTACAAAG
AATACTCTGAAGGGCGAGGAAAGTTAGCCGCGGCTAAAATGGGTCTCGAC
GTCATGCTGTGGCAGTTACTGGCAAGCGTCGCGGTGCCGGGCTTGACCAT
CAACCTCGTGGCAATGAAGGCCACAATGGCCAGTGAATCGGTCACGCGGG
TGGTGCCAAAAGTCGCCAGAAAATGGGCTCCAACGGCCATTGGCTTGGGT
ATCATTCCACTCATCGTGCATCCCATCGACGACGCGGTGACTCTGGCGAT
GGATTCGTCGATCCGAAAGTGGCTATGAGCAATGAAGGCCACAATGGCCA
GTGAATCGGTCACGCGGGTGGTGCCAAAAGTCGCCAGAAAATGGGCTCCA
ACGGCCATTGGCTTGGGTATCATTCCACTCATCGTGCATCCCATCGACGA
CGCGGTGACTCTGGCGATGGATTCGTCGATCCGAAAGTGGCTATGA
back to top