mRNA_H-elongata_contig69036.14550.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69036.14550.1
Unique NamemRNA_H-elongata_contig69036.14550.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69036.14550.1 vs. uniprot
Match: D8LCM6_ECTSI (Methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM6_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 8.640e-28
Identity = 50/85 (58.82%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    7 VVLDVAAAGGEPALSMSKAIPHATVYGTDFAPGMVEMIKKRCEQAGVQNLKARIEDGQELSGFSDGSVDVVTCSWGLESMPERQK 261
            VVLDVA+AGGEPA++++KA+P ATV+ TDFAP M+++I+KR  + GV N+ A + DG+ L+GF DGSVD VTC+WGL  MP  Q+
Sbjct:  113 VVLDVASAGGEPAITIAKAMPGATVHATDFAPAMMDLIRKRAAEEGVSNVVASVADGEALTGFGDGSVDAVTCTWGLLFMPNWQR 197          
BLAST of mRNA_H-elongata_contig69036.14550.1 vs. uniprot
Match: A0A6H5JCB5_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCB5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.750e-23
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    7 VVLDVAAAGGEPALSMSKA--------IPHATVYGTDFAPGMVEMIKKRCEQAGVQNLKARIEDGQELSGFSDGSVDVVTCSWGLESMPERQK 261
            VVLDVA+AGGEPA++++KA        +P AT++ TDFAP M+++I+KR  + GV N+ A + DG+ L+GF D +VD VTC+WGL  MP  Q+
Sbjct:  112 VVLDVASAGGEPAITIAKAREGIYRKAMPGATIHATDFAPVMIDLIRKRAVEEGVSNVVASVADGEALTGFGDETVDAVTCTWGLLFMPNWQR 204          
BLAST of mRNA_H-elongata_contig69036.14550.1 vs. uniprot
Match: A0A388LYJ6_CHABU (Methyltransf_25 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LYJ6_CHABU)

HSP 1 Score: 83.2 bits (204), Expect = 4.380e-17
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    1 SPVVLDVAAAGGEPALSMSKAIPHATVYGTDFAPGMVEMIKKRCEQAGVQNLKARIEDGQELSGFSDGSVDVVTCSWGLESMPERQK 261
            SP+VLDVA   G  A+ +++  P A +  TDF+  MVE +K+  ++AGV N+ A++ DGQ++    DGSVDV+TC++G+    +R +
Sbjct:   72 SPIVLDVAGGTGWCAIKVAQRFPQAQITATDFSSAMVEFMKRNIKEAGVANIVAKVMDGQDMKEVGDGSVDVLTCNFGINCFQDRAR 158          
BLAST of mRNA_H-elongata_contig69036.14550.1 vs. uniprot
Match: A0A7S0VV22_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VV22_9CRYP)

HSP 1 Score: 73.2 bits (178), Expect = 4.250e-14
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    1 SPVVLDVAAAGGEPALSMSKAIPHATVYGTDFAPGMVEMIKKRCEQAGVQNLKARIEDGQELSGFSDGSVDVVTCSWGLESMPERQK 261
            +P +LD+A+  GEPA ++++AIP A+V  TD +P MV    K    A + N+KA   D + +S  SDGS+DVVTC +G    P ++K
Sbjct:   67 NPTILDLASGPGEPAATIARAIPGASVIATDISPDMVATAAKVA--ATLPNMKAEACDMEAISAHSDGSLDVVTCCYGFMFPPNKEK 151          
BLAST of mRNA_H-elongata_contig69036.14550.1 vs. uniprot
Match: A0A835YPT1_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPT1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.890e-9
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    4 PVVLDVAAAGGEPALSMSKAIPHATVYGTDFAPGMVEMIKKRC----EQAGVQNLKARIEDGQELSGFSDGSVDVVT 222
            P VLDVA+A GEPA+S+++ +P ATV+ TD++PGMVE +  R     E  G+ N+          +G +DG  D++T
Sbjct:   76 PSVLDVASAAGEPAVSIARLLPQATVHATDYSPGMVEALNTRVAVLRETEGLANVH---------TGVADGESDILT 143          
BLAST of mRNA_H-elongata_contig69036.14550.1 vs. uniprot
Match: A0A7J9YQC7_9ACTN (Methyltransferase domain-containing protein n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7J9YQC7_9ACTN)

HSP 1 Score: 59.3 bits (142), Expect = 1.870e-8
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 1
Query:   10 VLDVAAAGGEPALSMSKAI-PHATVYGTDFAPGMVEMIKKRCEQAGVQNLKARIEDGQELSGFSDGSVDVVTCSWGLESMPE 252
            +L++AA  G    ++++ +     V  TDFAPGMVE+ ++R ++ G+ NL+ R+ D + +    D SVD V C WG   M +
Sbjct:   51 ILELAAGTGRTGFAVAERVGDEGRVISTDFAPGMVEVARRRGKELGLDNLEHRVLDAEAME-LDDASVDGVVCRWGYMLMAD 131          
BLAST of mRNA_H-elongata_contig69036.14550.1 vs. uniprot
Match: R1EHR3_EMIHU (Methyltransf_25 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EHR3_EMIHU)

HSP 1 Score: 57.8 bits (138), Expect = 6.430e-8
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   10 VLDVAAAGGEPALSMSKAIPHATVYGTDFAPGMVEMIKKRCEQAGV--QNLKARIEDGQELSGFSDGSVDVVTCSWGL 237
            +LD+A   GEPA +++K  P+A+V  +DF  GM+   ++R  + G+  Q   A++ D  +LS  +  S+D+VTCS GL
Sbjct:   41 ILDLACGPGEPACTLAKTFPNASVTASDFTDGMLAQAQERVAENGLGDQVTVAKL-DFNDLSSIASESIDLVTCSLGL 117          
BLAST of mRNA_H-elongata_contig69036.14550.1 vs. uniprot
Match: A0A7S3LDF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDF4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.380e-7
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   34 GEPALSMSKAIPHATVYGTDFAPGMVEMIKKRCEQAGVQNLKARIEDGQELSGFSDGSVDVVTCSWGLESMPERQK 261
            GEPA ++++  P ATV  TD +P  V + ++    A + ++  ++ D  +LS F D S D+VTC +G    P+  K
Sbjct:    3 GEPAETIARQFPQATVVATDISPDQVALAQQTT--ATLPHMTVQVADMMDLSDFEDESFDIVTCCYGFMFPPDIPK 76          
BLAST of mRNA_H-elongata_contig69036.14550.1 vs. uniprot
Match: A0A6M5Y9H3_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Spirosoma taeanense TaxID=2735870 RepID=A0A6M5Y9H3_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 9.070e-7
Identity = 27/85 (31.76%), Postives = 50/85 (58.82%), Query Frame = 1
Query:   10 VLDVAAAGGEPALSMSKAI-PHATVYGTDFAPGMVEMIKKRCEQAGVQNLKARIEDGQELSGFSDGSVDVVTCSWGLESMPERQK 261
            VLD+AA  GE +++ ++ + P   V  TD +  +++  K+  +QAG+ N+K ++ DG+ L+   D + D V    GL   P++Q+
Sbjct:   59 VLDIAAGAGEQSITTARRVGPSGYVLATDISSNILDYAKQMAQQAGLNNVKTQVMDGENLT-LDDETFDAVISRVGLIYFPDQQR 142          
BLAST of mRNA_H-elongata_contig69036.14550.1 vs. uniprot
Match: R7CE63_9ACTN (Demethylmenaquinone methyltransferase n=1 Tax=Cryptobacterium sp. CAG:338 TaxID=1262868 RepID=R7CE63_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 1.230e-6
Identity = 25/86 (29.07%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   10 VLDVAAAGGEPALSMSKAIPHATVYGTDFAPGMVEMIKKRCEQAGVQNLKARIE--DGQELSGFSDGSVDVVTCSWGLESMPERQK 261
            +LD+A   G+ A +     P A++  +D+ P M+E+ + R ++   + +   +   DGQ++  + D S D++T S+G+ +MPER++
Sbjct:  100 LLDIAGGTGDVAFTACAQKPPASIVLSDYTPAMLEVAQARLDEGEAKGVPVELAVVDGQDIP-YEDESFDILTMSYGIRNMPERER 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69036.14550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LCM6_ECTSI8.640e-2858.82Methyltransferase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JCB5_9PHAE5.750e-2350.54Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A388LYJ6_CHABU4.380e-1741.38Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A7S0VV22_9CRYP4.250e-1442.53Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A835YPT1_9STRA6.890e-941.56S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7J9YQC7_9ACTN1.870e-835.37Methyltransferase domain-containing protein n=1 Ta... [more]
R1EHR3_EMIHU6.430e-838.46Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A7S3LDF4_9STRA1.380e-734.21Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A6M5Y9H3_9BACT9.070e-731.76Class I SAM-dependent methyltransferase n=1 Tax=Sp... [more]
R7CE63_9ACTN1.230e-629.07Demethylmenaquinone methyltransferase n=1 Tax=Cryp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69036contigH-elongata_contig69036:132..1071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue3.9e-22
Seed eggNOG ortholog2880.D8LCM6
EggNOG free text desc.ubiE/COQ5 methyltransferase family
EggNOG OGs2CZJF@1,2SANJ@2759
Ec32 ortholog descriptionMethyltransferase type 11
Ec32 orthologEc-03_002320.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size261
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69036.14550.1prot_H-elongata_contig69036.14550.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69036 132..1071 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.6300788-CDS-H-elongata_contig69036:131..2701622931087.6300788-CDS-H-elongata_contig69036:131..270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69036 132..270 -
1691679692.8936372-CDS-H-elongata_contig69036:131..2701691679692.8936372-CDS-H-elongata_contig69036:131..270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69036 132..270 -
1622931087.6486557-CDS-H-elongata_contig69036:449..5111622931087.6486557-CDS-H-elongata_contig69036:449..511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69036 450..511 -
1691679692.9048052-CDS-H-elongata_contig69036:449..5111691679692.9048052-CDS-H-elongata_contig69036:449..511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69036 450..511 -
1622931087.668794-CDS-H-elongata_contig69036:1011..10711622931087.668794-CDS-H-elongata_contig69036:1011..1071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69036 1012..1071 -
1691679692.9172945-CDS-H-elongata_contig69036:1011..10711691679692.9172945-CDS-H-elongata_contig69036:1011..1071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69036 1012..1071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69036.14550.1

>prot_H-elongata_contig69036.14550.1 ID=prot_H-elongata_contig69036.14550.1|Name=mRNA_H-elongata_contig69036.14550.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
SPVVLDVAAAGGEPALSMSKAIPHATVYGTDFAPGMVEMIKKRCEQAGVQ
NLKARIEDGQELSGFSDGSVDVVTCSWGLESMPERQK
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mRNA from alignment at H-elongata_contig69036:132..1071-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69036.14550.1 ID=mRNA_H-elongata_contig69036.14550.1|Name=mRNA_H-elongata_contig69036.14550.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=940bp|location=Sequence derived from alignment at H-elongata_contig69036:132..1071- (Himanthalia elongata Himel1 dioecious)
AGTCCAGTCGTGCTCGACGTTGCAGCCGCTGGTGGGGAACCCGCTCTATC GATGTCCAAGGTAGGTCTAACGATCGTTTTGTGCACGCTGGTTTTGAGCC AAGCTTATAACGATAGCGGTCGAGTTCTCTTGGGAACTGAGGGGTCAGTA CCTCAGGGCCACAGTGACTTCTTGATGTATAGAGGAAAGGAGAACAACCC ACGTTGTGCGAGGGGCTATGGAAAATCAAAGACTACTCTTTCCTCCCTTA ATCGACCTCTCCTTCTTGTTCCCCCGGGATATATTCCTGTATCATGGCAA TTTGACCCTTAATTGTGAGTCCCTAACGAAACTCGTAGCGTTCGAGTTCT CTTGGGAACAGAGGGGCTCACACCTTAGGGCCACGGTTCCTTCTTGGTGT ACAGGAACGGAGGACCACCCACGTTGTGCAAAGGGCTACGGGAAGTCAAA GACTACTCTTTCCTTCCTTAAACGACCTCCCCTTCTTCTTCCCCCAAGAT ATATGGCTGCATAGCGTGGTAATCCGACCCTTGCGCTGCTGTAACTATTA CAATACGCAGGCGATACCACATGCTACGGTTTACGGGACAGATTTCGCAC CAGGAATGGTCGAGATGATCAAGTGAGCAGGGATTACAAGGGGGTGAATC TCTTCACCGTCGTCAGCAGAAGGAAGAAAGCTTGCGTTCCCGACAAGGCT TCATAAGCTTTGCTCAACATATATACCTACACTAGCTGTAGCTCGCTTGC AAACACTTATTGTTGCATTGTGGTGGATGTCCGTGTCGGCATGCTAAACA GGAAGCGGTGCGAGCAAGCCGGGGTCCAAAACCTCAAGGCTCGCATAGAA GACGGACAGGAGCTTTCTGGATTTTCCGATGGTTCTGTCGACGTGGTAAC TTGCTCCTGGGGTCTGGAATCCATGCCTGAGCGCCAAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig69036:132..1071-

>mRNA_H-elongata_contig69036.14550.1 ID=mRNA_H-elongata_contig69036.14550.1|Name=mRNA_H-elongata_contig69036.14550.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig69036:132..1071- (Himanthalia elongata Himel1 dioecious)
AGTCCAGTCGTGCTCGACGTTGCAGCCGCTGGTGGGGAACCCGCTCTATC
GATGTCCAAGAGTCCAGTCGTGCTCGACGTTGCAGCCGCTGGTGGGGAAC
CCGCTCTATCGATGTCCAAGGCGATACCACATGCTACGGTTTACGGGACA
GATTTCGCACCAGGAATGGTCGAGATGATCAAGCGATACCACATGCTACG
GTTTACGGGACAGATTTCGCACCAGGAATGGTCGAGATGATCAAGAAGCG
GTGCGAGCAAGCCGGGGTCCAAAACCTCAAGGCTCGCATAGAAGACGGAC
AGGAGCTTTCTGGATTTTCCGATGGTTCTGTCGACGTGGTAACTTGCTCC
TGGGGTCTGGAATCCATGCCTGAGCGCCAAAAAGAAGCGGTGCGAGCAAG
CCGGGGTCCAAAACCTCAAGGCTCGCATAGAAGACGGACAGGAGCTTTCT
GGATTTTCCGATGGTTCTGTCGACGTGGTAACTTGCTCCTGGGGTCTGGA
ATCCATGCCTGAGCGCCAAAAA
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