mRNA_H-elongata_contig68906.14532.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68906.14532.1
Unique NamemRNA_H-elongata_contig68906.14532.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A1M2V8C6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V8C6_TRAPU)

HSP 1 Score: 60.1 bits (144), Expect = 4.640e-9
Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
            +PT++ EAQ + +WP+W+ AI  EMD   A   + +V RP G  V+G+R+VF RK D DG
Sbjct:  987 DPTSLREAQEAPDWPKWEEAITVEMDNLRAHSTYDLVVRPVGAHVIGSRLVFHRKRDADG 1046          
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A5K1K0E1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K0E1_9APHY)

HSP 1 Score: 59.3 bits (142), Expect = 8.620e-9
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
            +P ++ EAQAS +WPQW+RAI  EM+   A G + +V +P G  V+G+++VF RK + +G
Sbjct:  321 DPLSLREAQASPDWPQWERAIEVEMENLRAHGTYDLVVKPPGAHVIGSKLVFHRKRNAEG 380          
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE)

HSP 1 Score: 57.4 bits (137), Expect = 1.290e-8
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
            EP+T++EA +SSE  +WK A+ REM+   A  V+ +VE PK K V+G++ +F+RK + DG
Sbjct:    5 EPSTINEALSSSEADKWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADG 64          
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A5K1K150_9APHY (Uncharacterized protein n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K150_9APHY)

HSP 1 Score: 57.0 bits (136), Expect = 5.670e-8
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
            +P ++ EAQ + +WPQW+RAI  EM+     G +++V +P G  V+G+++VF RK D  G
Sbjct:  972 DPMSLREAQEAPDWPQWERAIEVEMENLRVHGTYELVPKPPGAHVIGSKLVFHRKRDAQG 1031          
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A2G8RTP0_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RTP0_9APHY)

HSP 1 Score: 53.9 bits (128), Expect = 6.950e-7
Identity = 23/60 (38.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
            +P T+ EAQ + +W +W++AI+ EM+   A G +++V +P G  V+G+++VF RK + +G
Sbjct:  999 DPRTLREAQEAPDWVEWEKAISVEMENLKAHGTYELVAKPHGAHVIGSKLVFHRKRNAEG 1058          
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A177UTI3_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177UTI3_9BASI)

HSP 1 Score: 53.1 bits (126), Expect = 1.300e-6
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 EPTTMSEAQAS--SEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
            EP  + +AQA   +EW +W+ A+  E+      G W++VE P  + ++G+R VFK KTD+DG
Sbjct:  627 EPQNLKQAQARPPAEWTKWQEAMHEEIGSLREMGTWELVEAPPNRNIVGSRWVFKLKTDRDG 688          
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A6A3JN81_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3JN81_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.570e-5
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
            EP T+ EA  + +  +W  A+ +E         W++VERPKGKTVL ++ VF RK D +G
Sbjct:  210 EPQTVQEALNAPDTSKWIEALKKEFKDLMRNNTWELVERPKGKTVLSSKWVFMRKRDANG 269          
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A7S2ZDD5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZDD5_9RHOD)

HSP 1 Score: 49.7 bits (117), Expect = 2.160e-5
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
            EP T+ EA A      W+ AIA E++  +    W +V+RPK K VLG++ VFK KT++ G
Sbjct:  438 EPETIEEALAGPHAQYWEEAIADELESLSKFQTWTLVDRPKDKQVLGSKFVFKVKTNQSG 497          
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A7S2ZD23_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZD23_9RHOD)

HSP 1 Score: 49.7 bits (117), Expect = 2.170e-5
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
            EP T+ EA A      W+ AIA E++  +    W +V+RPK K VLG++ VFK KT++ G
Sbjct:  400 EPETIEEALAGPHAQYWEEAIADELESLSKFQTWTLVDRPKDKQVLGSKFVFKVKTNQSG 459          
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A6A3J374_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3J374_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.180e-5
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query:    1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
            EP T+ EA  + +  +W  A+ +E         W++VERPKGKTVL ++ VF RK D +G
Sbjct: 1042 EPQTVQEALNAPDASKWIEALKKEFKDLMRNNTWELVERPKGKTVLSSKWVFMRKRDANG 1101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A1M2V8C6_TRAPU4.640e-946.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A5K1K0E1_9APHY8.620e-945.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1X7VXK3_AMPQE1.290e-846.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5K1K150_9APHY5.670e-841.67Uncharacterized protein n=1 Tax=Ganoderma boninens... [more]
A0A2G8RTP0_9APHY6.950e-738.33Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A177UTI3_9BASI1.300e-640.32Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A3JN81_9STRA1.570e-541.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7S2ZDD5_9RHOD2.160e-543.33Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S2ZD23_9RHOD2.170e-543.33Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A6A3J374_9STRA2.180e-541.67Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68906contigH-elongata_contig68906:276..455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size180
Cds size168
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931085.418783-UTR-H-elongata_contig68906:275..2871622931085.418783-UTR-H-elongata_contig68906:275..287Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68906 276..287 +
1691679691.8828537-UTR-H-elongata_contig68906:275..2871691679691.8828537-UTR-H-elongata_contig68906:275..287Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68906 276..287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931085.4392068-CDS-H-elongata_contig68906:287..4551622931085.4392068-CDS-H-elongata_contig68906:287..455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68906 288..455 +
1691679691.8922875-CDS-H-elongata_contig68906:287..4551691679691.8922875-CDS-H-elongata_contig68906:287..455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68906 288..455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68906.14532.1prot_H-elongata_contig68906.14532.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68906 288..455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68906.14532.1

>prot_H-elongata_contig68906.14532.1 ID=prot_H-elongata_contig68906.14532.1|Name=mRNA_H-elongata_contig68906.14532.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKR
KTDKDG
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mRNA from alignment at H-elongata_contig68906:276..455+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68906.14532.1 ID=mRNA_H-elongata_contig68906.14532.1|Name=mRNA_H-elongata_contig68906.14532.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig68906:276..455+ (Himanthalia elongata Himel1 dioecious)
GAGCCGACAACCATGAGTGAGGCGCAAGCGTCGTCGGAGTGGCCGCAATG GAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAACTGCTCGAGGCGTGT GGCAGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGAACGAGAGTA GTTTTCAAGCGCAAAACCGACAAGGATGGA
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Coding sequence (CDS) from alignment at H-elongata_contig68906:276..455+

>mRNA_H-elongata_contig68906.14532.1 ID=mRNA_H-elongata_contig68906.14532.1|Name=mRNA_H-elongata_contig68906.14532.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig68906:276..455+ (Himanthalia elongata Himel1 dioecious)
ATGAGTGAGGCGCAAGCGTCGTCGGAGTGGCCGCAATGGAAAAGGGCGAT
CGCGCGCGAGATGGATGGGCAAACTGCTCGAGGCGTGTGGCAGGTGGTGG
AGCGCCCAAAAGGGAAGACGGTGTTGGGAACGAGAGTAGTTTTCAAGCGC
AAAACCGACAAGGATGGAATGAGTGAGGCGCAAGCGTCGTCGGAGTGGCC
GCAATGGAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAACTGCTCGAG
GCGTGTGGCAGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGAACG
AGAGTAGTTTTCAAGCGCAAAACCGACAAGGATGGA
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