mRNA_H-elongata_contig68906.14532.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A1M2V8C6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V8C6_TRAPU) HSP 1 Score: 60.1 bits (144), Expect = 4.640e-9 Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
+PT++ EAQ + +WP+W+ AI EMD A + +V RP G V+G+R+VF RK D DG
Sbjct: 987 DPTSLREAQEAPDWPKWEEAITVEMDNLRAHSTYDLVVRPVGAHVIGSRLVFHRKRDADG 1046
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A5K1K0E1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K0E1_9APHY) HSP 1 Score: 59.3 bits (142), Expect = 8.620e-9 Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
+P ++ EAQAS +WPQW+RAI EM+ A G + +V +P G V+G+++VF RK + +G
Sbjct: 321 DPLSLREAQASPDWPQWERAIEVEMENLRAHGTYDLVVKPPGAHVIGSKLVFHRKRNAEG 380
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE) HSP 1 Score: 57.4 bits (137), Expect = 1.290e-8 Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
EP+T++EA +SSE +WK A+ REM+ A V+ +VE PK K V+G++ +F+RK + DG
Sbjct: 5 EPSTINEALSSSEADKWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADG 64
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A5K1K150_9APHY (Uncharacterized protein n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K150_9APHY) HSP 1 Score: 57.0 bits (136), Expect = 5.670e-8 Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
+P ++ EAQ + +WPQW+RAI EM+ G +++V +P G V+G+++VF RK D G
Sbjct: 972 DPMSLREAQEAPDWPQWERAIEVEMENLRVHGTYELVPKPPGAHVIGSKLVFHRKRDAQG 1031
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A2G8RTP0_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RTP0_9APHY) HSP 1 Score: 53.9 bits (128), Expect = 6.950e-7 Identity = 23/60 (38.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
+P T+ EAQ + +W +W++AI+ EM+ A G +++V +P G V+G+++VF RK + +G
Sbjct: 999 DPRTLREAQEAPDWVEWEKAISVEMENLKAHGTYELVAKPHGAHVIGSKLVFHRKRNAEG 1058
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A177UTI3_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177UTI3_9BASI) HSP 1 Score: 53.1 bits (126), Expect = 1.300e-6 Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 1 EPTTMSEAQAS--SEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
EP + +AQA +EW +W+ A+ E+ G W++VE P + ++G+R VFK KTD+DG
Sbjct: 627 EPQNLKQAQARPPAEWTKWQEAMHEEIGSLREMGTWELVEAPPNRNIVGSRWVFKLKTDRDG 688
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A6A3JN81_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3JN81_9STRA) HSP 1 Score: 50.1 bits (118), Expect = 1.570e-5 Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
EP T+ EA + + +W A+ +E W++VERPKGKTVL ++ VF RK D +G
Sbjct: 210 EPQTVQEALNAPDTSKWIEALKKEFKDLMRNNTWELVERPKGKTVLSSKWVFMRKRDANG 269
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A7S2ZDD5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZDD5_9RHOD) HSP 1 Score: 49.7 bits (117), Expect = 2.160e-5 Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
EP T+ EA A W+ AIA E++ + W +V+RPK K VLG++ VFK KT++ G
Sbjct: 438 EPETIEEALAGPHAQYWEEAIADELESLSKFQTWTLVDRPKDKQVLGSKFVFKVKTNQSG 497
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A7S2ZD23_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZD23_9RHOD) HSP 1 Score: 49.7 bits (117), Expect = 2.170e-5 Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
EP T+ EA A W+ AIA E++ + W +V+RPK K VLG++ VFK KT++ G
Sbjct: 400 EPETIEEALAGPHAQYWEEAIADELESLSKFQTWTLVDRPKDKQVLGSKFVFKVKTNQSG 459
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Match: A0A6A3J374_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3J374_9STRA) HSP 1 Score: 49.7 bits (117), Expect = 2.180e-5 Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query: 1 EPTTMSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKTDKDG 180
EP T+ EA + + +W A+ +E W++VERPKGKTVL ++ VF RK D +G
Sbjct: 1042 EPQTVQEALNAPDASKWIEALKKEFKDLMRNNTWELVERPKGKTVLSSKWVFMRKRDANG 1101 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68906.14532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig68906.14532.1 >prot_H-elongata_contig68906.14532.1 ID=prot_H-elongata_contig68906.14532.1|Name=mRNA_H-elongata_contig68906.14532.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp MSEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRback to top mRNA from alignment at H-elongata_contig68906:276..455+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig68906.14532.1 ID=mRNA_H-elongata_contig68906.14532.1|Name=mRNA_H-elongata_contig68906.14532.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig68906:276..455+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig68906:276..455+ >mRNA_H-elongata_contig68906.14532.1 ID=mRNA_H-elongata_contig68906.14532.1|Name=mRNA_H-elongata_contig68906.14532.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig68906:276..455+ (Himanthalia elongata Himel1 dioecious)back to top |