mRNA_H-elongata_contig118733.1451.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118733.1451.1
Unique NamemRNA_H-elongata_contig118733.1451.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig118733.1451.1 vs. uniprot
Match: D8LRY2_ECTSI (ArfGAP n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY2_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 4.120e-37
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    1 QTNPECADCSAAYPDWVSLNLGVLMCIQCSGIHRSLGTHVSKVRSLGLDALDETDLSVVREVGNARSNAIWEHAL 225
            + NPECADC A  PDWVSLNLGVL+CIQCSGIHRSLGTHVSKVRSLGLDALDE DLSV+REVGNARSNAIWEH+L
Sbjct:  494 KANPECADCGAPNPDWVSLNLGVLVCIQCSGIHRSLGTHVSKVRSLGLDALDEIDLSVLREVGNARSNAIWEHSL 568          
BLAST of mRNA_H-elongata_contig118733.1451.1 vs. uniprot
Match: A0A6H5L7N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7N2_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 8.100e-37
Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    1 QTNPECADCSAAYPDWVSLNLGVLMCIQCSGIHRSLGTHVSKVRSLGLDALDETDLSVVREVGNARSNAIWEHAL 225
            + NPECADC A  PDWVS+NLGVL+CIQCSGIHRSLGTHVSKVRSLGLDALDE DLSV+REVGNARSNAIWEH+L
Sbjct:  566 KANPECADCGAPNPDWVSINLGVLVCIQCSGIHRSLGTHVSKVRSLGLDALDEIDLSVLREVGNARSNAIWEHSL 640          
BLAST of mRNA_H-elongata_contig118733.1451.1 vs. uniprot
Match: W7TN28_9STRA (Ankyrin repeat-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TN28_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.850e-27
Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 QTNPECADCSAAYPDWVSLNLGVLMCIQCSGIHRSLGTHVSKVRSLGLDALDETDLSVVREVGNARSNAIWEH 219
            Q NP CADC A +PDWVSLNLGV++C+QCSG+HRSLG HVSK+RSL LD +D  DL++V  +GN R N ++E+
Sbjct:   22 QQNPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEY 94          
BLAST of mRNA_H-elongata_contig118733.1451.1 vs. uniprot
Match: A0A835ZDE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE7_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.540e-26
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    7 NPECADCSAAYPDWVSLNLGVLMCIQCSGIHRSLGTHVSKVRSLGLDALDETDLSVVREVGNARSNAIWE 216
            N  CADC AA PDWVSLNLGV++CI CSGIHRSLG+H+SKVRSL LDAL ETDL V   VGN ++N +WE
Sbjct:  556 NTTCADCGAAGPDWVSLNLGVVVCIGCSGIHRSLGSHISKVRSLALDALTETDLCVALHVGNEKANQLWE 625          
BLAST of mRNA_H-elongata_contig118733.1451.1 vs. uniprot
Match: A0A183HVS6_9BILA (Arf-GAP domain-containing protein n=1 Tax=Onchocerca flexuosa TaxID=387005 RepID=A0A183HVS6_9BILA)

HSP 1 Score: 100 bits (248), Expect = 1.550e-25
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    7 NPECADCSAAYPDWVSLNLGVLMCIQCSGIHRSLGTHVSKVRSLGLDALDETDLSVVREVGNARSNAIWEHA 222
            N  CADC A  PDW SLNLG L+CI+CSGIHR+LG+H+SKVRSL LD      L+V+  +GN ++NAIWEH+
Sbjct:    8 NDSCADCDAPKPDWASLNLGTLICIECSGIHRNLGSHISKVRSLDLDDWPMEYLNVMEAIGNKKANAIWEHS 79          
BLAST of mRNA_H-elongata_contig118733.1451.1 vs. uniprot
Match: A0A4D9D8E4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8E4_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.930e-25
Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 QTNPECADCSAAYPDWVSLNLGVLMCIQCSGIHRSLGTHVSKVRSLGLDALDETDLSVVREVGNARSNAIWEH 219
            Q NP CADC A +PDWVSLNLGV++C+QCSG+HRSLG HVSK+RSL LD +D  DL++V  +GN R N ++E+
Sbjct:  655 QQNPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNQVYEY 727          
BLAST of mRNA_H-elongata_contig118733.1451.1 vs. uniprot
Match: A0A448Z6Q3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6Q3_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.950e-25
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 QTNPECADCSAAYPDWVSLNLGVLMCIQCSGIHRSLGTHVSKVRSLGLDALDETDLSVVREVGNARSNAIWEHAL 225
            + NP CADC A  PDWVSLNLGVL+CI CSG+HRSLG HVSKVRSL LDAL E + +V+  +GN  +N IWE  +
Sbjct: 1312 KANPTCADCGAENPDWVSLNLGVLICIDCSGVHRSLGVHVSKVRSLKLDALTEFEANVILAIGNENANGIWEEGV 1386          
BLAST of mRNA_H-elongata_contig118733.1451.1 vs. uniprot
Match: A0A7S4HYM5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HYM5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 9.160e-25
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    7 NPECADCSAAYPDWVSLNLGVLMCIQCSGIHRSLGTHVSKVRSLGLDALDETDLSVVREVGNARSNAIWEHAL 225
            NP CADC AA PDWVSLNLGV++CI CSG+HRSLG HVSKVRS+ LD L E + +++  +GN R+N +WE AL
Sbjct:  808 NPTCADCGAADPDWVSLNLGVVICIDCSGVHRSLGVHVSKVRSMRLDDLSEAESNLLLALGNKRANVLWEAAL 880          
BLAST of mRNA_H-elongata_contig118733.1451.1 vs. uniprot
Match: A0A1X2HWK9_SYNRA (Uncharacterized protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HWK9_SYNRA)

HSP 1 Score: 104 bits (259), Expect = 2.320e-24
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    4 TNPECADCSAAYPDWVSLNLGVLMCIQCSGIHRSLGTHVSKVRSLGLDALDETD--LSVVREVGNARSNAIW 213
            +N  CADC AA PDW SLNLG+L+CI+CSGIHRSLGTHVSKVRSL LD+   T   ++++R +GNARSNA+W
Sbjct:  570 SNSVCADCGAANPDWCSLNLGILLCIECSGIHRSLGTHVSKVRSLTLDSTSYTPDIIALLRSIGNARSNAVW 641          
BLAST of mRNA_H-elongata_contig118733.1451.1 vs. uniprot
Match: A0A7S1D2Y4_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D2Y4_CYCTE)

HSP 1 Score: 99.4 bits (246), Expect = 3.450e-24
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    7 NPECADCSAAYPDWVSLNLGVLMCIQCSGIHRSLGTHVSKVRSLGLDALDETDLSVVREVGNARSNAIWEHAL 225
            NP CADC A  PDW SLNLGV++CI+CSG+HRSLG H+SKVRSL LD+L + +  ++  +GN   N IWE AL
Sbjct:  121 NPYCADCGAPQPDWASLNLGVMVCIECSGVHRSLGVHLSKVRSLKLDSLSDAEGRLLLAMGNTVLNTIWERAL 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118733.1451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRY2_ECTSI4.120e-3788.00ArfGAP n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5L7N2_9PHAE8.100e-3786.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TN28_9STRA5.850e-2763.01Ankyrin repeat-containing protein n=1 Tax=Nannochl... [more]
A0A835ZDE7_9STRA5.540e-2671.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A183HVS6_9BILA1.550e-2561.11Arf-GAP domain-containing protein n=1 Tax=Onchocer... [more]
A0A4D9D8E4_9STRA1.930e-2563.01Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A448Z6Q3_9STRA1.950e-2564.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4HYM5_9STRA9.160e-2564.38Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1X2HWK9_SYNRA2.320e-2466.67Uncharacterized protein n=1 Tax=Syncephalastrum ra... [more]
A0A7S1D2Y4_CYCTE3.450e-2460.27Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118733contigH-elongata_contig118733:376..1320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue2.3e-31
Seed eggNOG ortholog2880.D8LRY2
KEGG koko:K12488,ko:K12489,ko:K14820
KEGG Pathwayko04144,ko04666,map04144,map04666
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0521@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929694.8282297-CDS-H-elongata_contig118733:375..5091622929694.8282297-CDS-H-elongata_contig118733:375..509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118733 376..509 -
1691679121.907507-CDS-H-elongata_contig118733:375..5091691679121.907507-CDS-H-elongata_contig118733:375..509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118733 376..509 -
1622929694.847236-CDS-H-elongata_contig118733:1229..13201622929694.847236-CDS-H-elongata_contig118733:1229..1320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118733 1230..1320 -
1691679121.9215202-CDS-H-elongata_contig118733:1229..13201691679121.9215202-CDS-H-elongata_contig118733:1229..1320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118733 1230..1320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118733.1451.1prot_H-elongata_contig118733.1451.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118733 376..1320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118733.1451.1

>prot_H-elongata_contig118733.1451.1 ID=prot_H-elongata_contig118733.1451.1|Name=mRNA_H-elongata_contig118733.1451.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
QTNPECADCSAAYPDWVSLNLGVLMCIQCSGIHRSLGTHVSKVRSLGLDA
LDETDLSVVREVGNARSNAIWEHAL
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mRNA from alignment at H-elongata_contig118733:376..1320-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118733.1451.1 ID=mRNA_H-elongata_contig118733.1451.1|Name=mRNA_H-elongata_contig118733.1451.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=945bp|location=Sequence derived from alignment at H-elongata_contig118733:376..1320- (Himanthalia elongata Himel1 dioecious)
CAGACAAACCCCGAGTGCGCCGACTGCTCGGCGGCATATCCGGACTGGGT ATCGCTGAACCTGGGGGTGCTCATGTGCATACAGTGCAGCGGTGCGTGTG TGTGTGTGCCTTTTTTCGTTTAATCATTCGTTCGTCCGTCCGTTTAAGTT ATTGAGGGTTTTATTCCTTGTGTATGTGTCTGTGCCTGTGTTTGTGCTTA CACGAGAGGGGCGACGGAGGGGGAGGCACACGTTCTGCTGCAAGATTTAC CGTGTACCTTTTTTCTTGTGTTTTTTGTTAAGGTAACGTCGCATTGCATT GGGAGAGGGGGGTGAGAGAGCGTCTTTCTCTGCCGCTTGATGAGTTTTTT TTTCAAGAGGCTACCAGTGGTTTTGCCGGCAACAGCGACAAGGATCGCGC AGCGCCTGACTGTCTGTCTAGCTAGCGATCTACAACCTACCTTGAACTAC CAACATACTCTCTACACACAAGACACCTTGAAGTACCAACATATTTTGCC GATACTACCGTACATAATATTATTCGCTAGGCTAAGACTATGTTAGACTC TATATCATAGATAGGGAAGAAAAATAGTTAGTATTATTATAGTTATTTTC TCTGTTTTTTTTTTTCATTTGACCCGGGATAGCAACAAATACCGCTTTTT TTTCGTGCGACGCGATACGATGGGATGGGATGTGGGATGGGATGGGATGG GATGTCAACGCGATACGATAGCGCGATGTGACGCGATGCCATATCCCCTC TTTTTTTTTTTCTTTTTTTTTCTTCTTTTTTTTCTTTTTTATGCCGCCCT TGTTTCCACAGGGATCCACCGGTCACTGGGCACGCACGTGTCGAAGGTAC GATCGCTCGGCCTCGATGCGCTCGACGAGACCGACCTCAGCGTGGTGCGA GAGGTCGGAAACGCCAGATCGAACGCCATCTGGGAGCACGCATTG
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Coding sequence (CDS) from alignment at H-elongata_contig118733:376..1320-

>mRNA_H-elongata_contig118733.1451.1 ID=mRNA_H-elongata_contig118733.1451.1|Name=mRNA_H-elongata_contig118733.1451.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig118733:376..1320- (Himanthalia elongata Himel1 dioecious)
CAGACAAACCCCGAGTGCGCCGACTGCTCGGCGGCATATCCGGACTGGGT
ATCGCTGAACCTGGGGGTGCTCATGTGCATACAGTGCAGCGCAGACAAAC
CCCGAGTGCGCCGACTGCTCGGCGGCATATCCGGACTGGGTATCGCTGAA
CCTGGGGGTGCTCATGTGCATACAGTGCAGCGGGATCCACCGGTCACTGG
GCACGCACGTGTCGAAGGTACGATCGCTCGGCCTCGATGCGCTCGACGAG
ACCGACCTCAGCGTGGTGCGAGAGGTCGGAAACGCCAGATCGAACGCCAT
CTGGGAGCACGCATTGGGATCCACCGGTCACTGGGCACGCACGTGTCGAA
GGTACGATCGCTCGGCCTCGATGCGCTCGACGAGACCGACCTCAGCGTGG
TGCGAGAGGTCGGAAACGCCAGATCGAACGCCATCTGGGAGCACGCATTG
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