mRNA_H-elongata_contig68733.14509.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68733.14509.1
Unique NamemRNA_H-elongata_contig68733.14509.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig68733.14509.1 vs. uniprot
Match: D8LNX5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX5_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 2.040e-118
Identity = 190/269 (70.63%), Postives = 216/269 (80.30%), Query Frame = 1
Query:    1 QVMFLKTEHDKAIECYRDVLRYKPNNYQALEKLIGLLRRAGKLSEVPELLDLAKAGNPRSSAHAGLRFCRGLYHRYINDIHEAIHHLNFARIDGEWGRRALEHLIEIYVSPNGDHLWEVVTGAPSDDAYAEALDVARVLLSELEKFDGEDGDARERERAVVTEAAMKRRYLENTVKMMGRKKNGVDGAMAGYISMLEDDKENVRGLLGMSLAFTLEKSPNKARNALKRIAKMPYTLEMAEEFEQAYLHLAQLYVDRGKFDLAQVTLRRA 807
            +VMFLKT+H KAI+CYR VL+ KPNNYQAL+KLIGLLRRAG+L+EVP LL+LAKAG+PRSSAHAGLRFC GLYHRY ND+HEA+  LN AR DGEWG +ALEHLIEIY+SPNGDHLWEVVT     +  AE+L +A+  LSEL+K    D  +         +A ++ RYLE+ VKMM R K  VD AM G++SMLEDDKENV  LLGMSLAFTLE SPNKARNALKRIAKMPYTLE AEEFEQAYLHLA LYVDRGKFDLAQ   RR+
Sbjct:  957 EVMFLKTDHAKAIQCYRSVLKQKPNNYQALQKLIGLLRRAGQLNEVPALLELAKAGDPRSSAHAGLRFCSGLYHRYTNDMHEAVRQLNRARQDGEWGAQALEHLIEIYISPNGDHLWEVVTSPQGGEGSAESLGIAKFFLSELQKISRGDSRSGAGATGGTNKAGIRLRYLESAVKMMARDKESVDAAMTGFMSMLEDDKENVPALLGMSLAFTLEDSPNKARNALKRIAKMPYTLESAEEFEQAYLHLAHLYVDRGKFDLAQDLCRRS 1225          
BLAST of mRNA_H-elongata_contig68733.14509.1 vs. uniprot
Match: A0A7S2FRK9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FRK9_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.030e-58
Identity = 114/265 (43.02%), Postives = 164/265 (61.89%), Query Frame = 1
Query:   10 FLKTEHDKAIECYRDVLRYKPNNYQALEKLIGLLRRAGKLSEVPELLDLAKAGNPRSSAHAGLRFCRGLYHRYINDIHEAIHHLNFARIDGEWGRRALEHLIEIYVSPNGDHLWEVVTGAPSDDAYAEALDVARVLLSELEKFDGEDGDARERERAVVTEAAMKRRYLENTVKMMGRKKNGVDGAMAGYISMLEDDKENVRGLLGMSLAFTLEKSPNKARNALKRIAKMPYTLEMAEEFEQAYLHLAQLYVDRGKFDLAQVTLRR 804
            F +   ++A+  Y  VL+ KPNNY AL+KLI LL+R+GKL++ P+ L LA+  N R+ +HAGL FC+GLYHR  +DIHEA+ H N  R DGEWGR  L +++E+Y++P+ D+ W+  +   S  A  EA+ +A  L+ EL                 V    ++   L    K+ G K+  +D A   +I MLE+D+E V  +LG+S  F  EK+ NKARN LKRIAKM ++ ++ +EFE AYL+LA +Y+ R K+DLA    RR
Sbjct:  473 FAQGNDEEAMSEYMKVLKRKPNNYNALKKLIVLLKRSGKLTDAPKYLKLAERNNARAFSHAGLHFCKGLYHRSSDDIHEAVKHFNLGRRDGEWGRECLTNMVEVYLNPDNDNTWDAESDGNSGQA--EAVKIAGKLMDELAAMTPTPHP--------VGFRVLQTYSLLGEYKISGNKEQ-LDRAEQQFIEMLEEDREFVPAMLGLSNVFMFEKAQNKARNMLKRIAKMQHSQDLCDEFESAYLNLADIYILRSKYDLALDLCRR 726          
BLAST of mRNA_H-elongata_contig68733.14509.1 vs. uniprot
Match: A0A418APG6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418APG6_9STRA)

HSP 1 Score: 203 bits (516), Expect = 8.240e-56
Identity = 109/261 (41.76%), Postives = 158/261 (60.54%), Query Frame = 1
Query:   25 HDKAIECYRDVLRYKPNNYQALEKLIGLLRRAGKLSEVPELLDLAKAGNPRSSAHAGLRFCRGLYHRYINDIHEAIHHLNFARIDGEWGRRALEHLIEIYVSPNGDHLWEVVTGAPSDDAYAEALDVARVLLSELEKFDGEDGDARERERAVVTEAAMKRRYLENTVKMMGRKKNGVDGAMAGYISMLEDDKENVRGLLGMSLAFTLEKSPNKARNALKRIAKMPYTLEMAEEFEQAYLHLAQLYVDRGKFDLAQVTLRRA 807
            ++ AI  ++++L  KP+N+  L + I +LR+AGKL   P  L LA+   PR +  AGL +C+GLYHR+ N+IH+AI  LNFAR D EWG+RAL H++EIY++P+ ++LW+    A  D    E + +A  LL EL                   E  M+ R LE    M  + K  V+ A A  + +LE+D++NV  LL ++ A+ L K   KARN LKRIAKM Y   +A+EFE++Y+ LA +YV R K+DLAQ   ++A
Sbjct:  822 NESAIFHFQNLLESKPDNFTVLSRFIVMLRQAGKLDRAPRFLKLAERAGPRVAHSAGLHYCKGLYHRFQNNIHDAIQELNFARKDSEWGQRALVHMVEIYINPDNENLWDNPDEATKDQV--ENIRIANALLDEL-----------------APEKTMRIRVLECYAAMSAKNKAMVEKATATLLELLEEDRDNVPALLALATAYMLAKQQPKARNQLKRIAKMNYDSTIADEFERSYILLADIYVSRSKYDLAQELCKKA 1063          
BLAST of mRNA_H-elongata_contig68733.14509.1 vs. uniprot
Match: A0A485KXP9_9STRA (Aste57867_12996 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXP9_9STRA)

HSP 1 Score: 203 bits (516), Expect = 8.940e-56
Identity = 107/267 (40.07%), Postives = 162/267 (60.67%), Query Frame = 1
Query:    7 MFLKTEHDKAIECYRDVLRYKPNNYQALEKLIGLLRRAGKLSEVPELLDLAKAGNPRSSAHAGLRFCRGLYHRYINDIHEAIHHLNFARIDGEWGRRALEHLIEIYVSPNGDHLWEVVTGAPSDDAYAEALDVARVLLSELEKFDGEDGDARERERAVVTEAAMKRRYLENTVKMMGRKKNGVDGAMAGYISMLEDDKENVRGLLGMSLAFTLEKSPNKARNALKRIAKMPYTLEMAEEFEQAYLHLAQLYVDRGKFDLAQVTLRRA 807
            M  K +++ AI  ++++L  KP+N+  L + IG+LR+AGKL   P  L LA+   PR +  AGL +C+GLY+R++N+IH+AI   N+AR DGEWG+RAL H+IEIY++P+ +++W+      S+    E + +A  LL EL                   E  ++ R LE    M  + K  V+ A A  + +LE+D++NV  LL ++ A+ L K   KARN LKRIAKM Y   + +EFE++Y+ LA +YV R K+DLAQ   ++A
Sbjct:  980 MLQKDDNESAIYHFQNLLEAKPDNFTVLSRFIGMLRQAGKLERAPRFLKLAERAGPRVAHSAGLHYCKGLYNRFLNNIHDAIEEFNYARKDGEWGQRALVHMIEIYINPDSENMWD--NPDDSNKEQVENIRIANALLDELSP-----------------EKTLRVRVLECYTAMAVKSKAMVEKATATLLELLEEDRDNVPALLALATAYMLAKQQPKARNQLKRIAKMNYDASIPDEFERSYILLADIYVSRSKYDLAQELCKKA 1227          
BLAST of mRNA_H-elongata_contig68733.14509.1 vs. uniprot
Match: A0A7S1UGI0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGI0_9STRA)

HSP 1 Score: 195 bits (496), Expect = 5.180e-54
Identity = 111/267 (41.57%), Postives = 156/267 (58.43%), Query Frame = 1
Query:    7 MFLKTEHDKAIECYRDVLRYKPNNYQALEKLIGLLRR-AGKLSEVPELLDLAKAGNPRSSAHAGLRFCRGLYHRYINDIHEAIHHLNFARIDGEWGRRALEHLIEIYVSPNGDHLWEVVTGAPSDDAYAEALDVARVLLSELEKFDGEDGDARERERAVVTEAAMKRRYLENTVKMMGRKKNGVDGAMAGYISMLEDDKENVRGLLGMSLAFTLEKSPNKARNALKRIAKMPYTLEMAEEFEQAYLHLAQLYVDRGKFDLAQVTLRR 804
            +FL+ E   A+E Y+ +L   PNNY+AL KL  LL R  G L EV  L+D A + +PRS++HAGL +CRG++ R  ND   A+ + N AR DG WG R+LE ++ +Y++P G ++WE      S DA AE   V + LL E                     A    + LEN   ++ R++  +D AM  ++ ML++D+E+V  LLGMS AF  + +  KARN LKRI KM Y   +A EFE AYL LA+LY+++ KFDLA    +R
Sbjct:  388 LFLQDELADAMEQYQSLLGENPNNYRALSKLAELLPRYTGTLDEVQRLIDRAASADPRSASHAGLNYCRGVHARCANDPAAAVRYFNLARRDGVWGERSLEAMVRVYLNPGGGNMWE---DDGSGDAAAETQRVVQKLLGEWRAMGA---------------AEQTGQVLENHALLLTRRRADIDRAMQAFMGMLDEDRESVPALLGMSTAFMFDGAQQKARNTLKRIGKMQYQQGLAAEFEAAYLMLAELYIEKNKFDLANDLCKR 636          
BLAST of mRNA_H-elongata_contig68733.14509.1 vs. uniprot
Match: A0A3R6XBN5_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XBN5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.640e-51
Identity = 106/289 (36.68%), Postives = 160/289 (55.36%), Query Frame = 1
Query:   25 HDKAIECYRDVLRYKPNNYQALEKLIGLLRRAGKLSEVPELLDLAKAGNPRSSAHAGLRFCRGLYHRYINDIHEAIHHLNFARIDGEWGRRALEHLIEIYVSPNGDHLWEVVTGAPSDDAYAEALDVARVLLSELEKFDGEDGDARERERAVVTEAAMKRRYLENTVKMMGRKKNGVDGAMAGYISMLEDDKENVRGLLG----------------------------MSLAFTLEKSPNKARNALKRIAKMPYTLEMAEEFEQAYLHLAQLYVDRGKFDLAQVTLRRA 807
            ++ AI  ++++L  KP+N+  L + I +LR+AGKL   P  L LA    PR +  AGL +C+GLY+R+ N+IH+AI   NFAR DGEWG+RAL H+IEIY++P+ ++LW+    +  D    E + +A  LL EL                   + +++ R LE    M  + K  V+ A A  + +LE+D++NV  LLG                            ++ A+ L K  +KARN LKRIAKM Y   + +EFE++Y+ LA +YV+R K+DLAQ   ++A
Sbjct:   71 NESAIFHFQNLLESKPDNFTVLSRFIVMLRQAGKLDRAPRFLKLADRSGPRVAHSAGLHYCKGLYNRFQNNIHDAIQEFNFARKDGEWGQRALVHMIEIYINPDSENLWDNPDDSNKDQM--ENMRIANALLDELSP-----------------DKSVRIRVLECYAAMSAKTKPMVEKATATLLELLEEDRDNVPALLGTCVSQPSIQMNDNHPSNELLLLYIFYLALATAYMLAKQQSKARNQLKRIAKMNYDAAIPDEFERSYILLADIYVNRAKYDLAQELCKKA 340          
BLAST of mRNA_H-elongata_contig68733.14509.1 vs. uniprot
Match: A0A7R9UC52_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC52_9STRA)

HSP 1 Score: 191 bits (484), Expect = 1.740e-51
Identity = 107/267 (40.07%), Postives = 155/267 (58.05%), Query Frame = 1
Query:    7 MFLKTEHDKAIECYRDVLRYKPNNYQALEKLIGLLRR-AGKLSEVPELLDLAKAGNPRSSAHAGLRFCRGLYHRYINDIHEAIHHLNFARIDGEWGRRALEHLIEIYVSPNGDHLWEVVTGAPSDDAYAEALDVARVLLSELEKFDGEDGDARERERAVVTEAAMKRRYLENTVKMMGRKKNGVDGAMAGYISMLEDDKENVRGLLGMSLAFTLEKSPNKARNALKRIAKMPYTLEMAEEFEQAYLHLAQLYVDRGKFDLAQVTLRR 804
            +FLK E   A+E Y+ +L   PNNY+AL KL  LL R  G L+EV  L++ A   + RS++HAGL +CRG++ RY ND   A+ H N AR DG WG RALE +I++Y++P   ++W+   G   ++A  E   +   LL E    + ++               +K R L +   ++ R+   +D A   ++ +L DD+E+V  LLGMS+AF  E    KARN LKRI KM Y  ++A EFE AYL LA+L +++ KFDLA    +R
Sbjct: 1054 LFLKGEVTPALEHYQKILSDNPNNYRALAKLSELLPRYTGTLTEVERLIERAATADVRSASHAGLNYCRGVHARYANDPGHAVKHFNLARKDGVWGERALEAMIQVYLNPGNGNMWD---GGSGNEAAGETNRIISQLLQEWRDMECDE---------------IKGRILGSYALLLTRRTKDIDAAKQNFVDLLTDDRESVPALLGMSVAFMFEGQRPKARNTLKRIGKMQYQQDLASEFETAYLMLAELDIEKNKFDLAHGLCKR 1302          
BLAST of mRNA_H-elongata_contig68733.14509.1 vs. uniprot
Match: A0A067D2Q1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067D2Q1_SAPPC)

HSP 1 Score: 189 bits (481), Expect = 4.330e-51
Identity = 104/264 (39.39%), Postives = 156/264 (59.09%), Query Frame = 1
Query:   16 KTEHDKAIECYRDVLRYKPNNYQALEKLIGLLRRAGKLSEVPELLDLAKAGNPRSSAHAGLRFCRGLYHRYINDIHEAIHHLNFARIDGEWGRRALEHLIEIYVSPNGDHLWEVVTGAPSDDAYAEALDVARVLLSELEKFDGEDGDARERERAVVTEAAMKRRYLENTVKMMGRKKNGVDGAMAGYISMLEDDKENVRGLLGMSLAFTLEKSPNKARNALKRIAKMPYTLEMAEEFEQAYLHLAQLYVDRGKFDLAQVTLRRA 807
            K +++ AI  ++++L  K +N+  L + I +LR AGKL  VP  L LA+   PR +  AGL FC+GLY+RY N+IH+A+   N AR D EWG  AL ++IEIY++P+ +++W+      S     E + +A  LL EL                   E  +K R LE    +  + K  ++ A+A ++ +LE +KE+V  LLG++ A+ L K   KARN LKRIAKM Y   +A+EFE++Y+ LA +YV R K+DLAQ   ++A
Sbjct:  955 KDDNESAIFHFQNLLEAKADNFAVLSRFITMLRHAGKLERVPRFLKLAERSGPRVAHSAGLHFCKGLYNRYQNNIHDAVAAFNLARKDPEWGSHALINMIEIYLNPDNENIWDT-PDVDSSKEQTENIRIANALLDEL-----------------PYEKTLKLRVLEAYAVLANKTKPTIEKAIAVFLEILEQEKESVAALLGLATAYMLAKQQPKARNQLKRIAKMNYDPTLADEFERSYILLADIYVSRSKYDLAQELCKKA 1200          
BLAST of mRNA_H-elongata_contig68733.14509.1 vs. uniprot
Match: A0A6G0XY77_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XY77_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.100e-50
Identity = 104/258 (40.31%), Postives = 154/258 (59.69%), Query Frame = 1
Query:   34 AIECYRDVLRYKPNNYQALEKLIGLLRRAGKLSEVPELLDLAKAGNPRSSAHAGLRFCRGLYHRYINDIHEAIHHLNFARIDGEWGRRALEHLIEIYVSPNGDHLWEVVTGAPSDDAYAEALDVARVLLSELEKFDGEDGDARERERAVVTEAAMKRRYLENTVKMMGRKKNGVDGAMAGYISMLEDDKENVRGLLGMSLAFTLEKSPNKARNALKRIAKMPYTLEMAEEFEQAYLHLAQLYVDRGKFDLAQVTLRRA 807
            AI  ++++L  KP+N+  L + I +LR+AGKL   P  L LA+   PR +  AGL +C GLY+R+ N+IH+AI   NFAR DGEWG+RAL H+IEIY++P+ +++W+    A  +    E + +A  LL EL                   E +++ R LE    M  + K  V+ A    + +LE+D++NV  LL ++ A+ L K   KARN LKRIAKM Y   + +EFE++Y+ LA +YV R K+DLAQ   ++A
Sbjct:  994 AIFHFQNLLENKPDNFTVLSRFIVILRQAGKLERAPRYLKLAERSGPRVAHSAGLHYCNGLYNRFQNNIHDAIEEFNFARKDGEWGQRALIHMIEIYINPDSENMWDNPDNATKEQN--ENIRIAHALLDELSP-----------------EKSVRIRVLECYAIMAAKTKPMVEKATTLLLEILEEDRDNVPALLALATAYMLAKQQPKARNQLKRIAKMNYDPAIPDEFERSYILLADIYVSRSKYDLAQELCKKA 1232          
BLAST of mRNA_H-elongata_contig68733.14509.1 vs. uniprot
Match: A0A1V9Z3U0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3U0_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.490e-50
Identity = 105/260 (40.38%), Postives = 157/260 (60.38%), Query Frame = 1
Query:   34 AIECYRDVLRYKPNNYQALEKLIGLLRRAGKLSEVPELLDLAKAGNPRSSAHAGLRFCRGLYHRYINDIHEAIHHLNFARIDGEWGRRALEHLIEIYVSPNGDHLWEVVTGAPSDDA--YAEALDVARVLLSELEKFDGEDGDARERERAVVTEAAMKRRYLENTVKMMGRKKNGVDGAMAGYISMLEDDKENVRGLLGMSLAFTLEKSPNKARNALKRIAKMPYTLEMAEEFEQAYLHLAQLYVDRGKFDLAQVTLRRA 807
            AI  ++++L  KP+N+  L + I +LR AGKL  VP  L LA+   PR +  AGL +C+GLY+R+ N+IH+AI  LN AR D EWG +AL ++IEIY++P+ ++LW+     P D +    E + +A  LL EL +                 E + K R LE    +  + K  ++ A+A ++ +LE D++NV  LLG++  + L K   KARN LKRIAKM Y   +A+EFE++Y+ LA +YV R K+DLAQ   ++A
Sbjct:  979 AIYHFQNLLEAKPDNFAVLSRFITMLRHAGKLDRVPRYLKLAERAGPRVAHSAGLHYCKGLYNRFQNNIHDAIAELNLARKDAEWGGQALINMIEIYLNPDNENLWD----NPDDSSKEQTENIRIANALLDELPQ-----------------ERSFKLRVLEAYAVLATKTKPAIEKAIAVFLEILELDRDNVAALLGLATGYMLAKQQPKARNQLKRIAKMNYDPTLADEFERSYILLADIYVSRSKYDLAQELCKKA 1217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68733.14509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNX5_ECTSI2.040e-11870.63Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A7S2FRK9_9STRA2.030e-5843.02Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A418APG6_9STRA8.240e-5641.76Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485KXP9_9STRA8.940e-5640.07Aste57867_12996 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S1UGI0_9STRA5.180e-5441.57Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A3R6XBN5_9STRA1.640e-5136.68Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A7R9UC52_9STRA1.740e-5140.07Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A067D2Q1_SAPPC4.330e-5139.39Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A6G0XY77_9STRA1.100e-5040.31Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9Z3U0_9STRA1.490e-5040.38Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68733contigH-elongata_contig68733:228..3022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score375.9
Seed ortholog evalue1.5e-101
Seed eggNOG ortholog2880.D8LNX5
Preferred nameTTC21B
KEGG koko:K19673
GOsGO:0003002,GO:0005575,GO:0005623,GO:0005929,GO:0006355,GO:0006357,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008589,GO:0009889,GO:0009953,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010646,GO:0010970,GO:0016043,GO:0019219,GO:0019222,GO:0021591,GO:0021798,GO:0021871,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030705,GO:0030900,GO:0030990,GO:0030991,GO:0031323,GO:0031326,GO:0031503,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035721,GO:0035735,GO:0042073,GO:0042995,GO:0043226,GO:0044085,GO:0044422,GO:0044441,GO:0044463,GO:0044464,GO:0044782,GO:0046907,GO:0048513,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060271,GO:0060322,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0080090,GO:0097542,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.intraciliary retrograde transport
EggNOG OGs28HZH@1,2QQAB@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-08_005460.1
Exons5
Model size807
Cds size801
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68733.14509.1prot_H-elongata_contig68733.14509.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68733 228..3016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.6592686-CDS-H-elongata_contig68733:227..3711622931081.6592686-CDS-H-elongata_contig68733:227..371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68733 228..371 -
1691679690.3588517-CDS-H-elongata_contig68733:227..3711691679690.3588517-CDS-H-elongata_contig68733:227..371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68733 228..371 -
1622931081.676466-CDS-H-elongata_contig68733:597..7541622931081.676466-CDS-H-elongata_contig68733:597..754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68733 598..754 -
1691679690.3694263-CDS-H-elongata_contig68733:597..7541691679690.3694263-CDS-H-elongata_contig68733:597..754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68733 598..754 -
1622931081.6944056-CDS-H-elongata_contig68733:1853..20751622931081.6944056-CDS-H-elongata_contig68733:1853..2075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68733 1854..2075 -
1691679690.37753-CDS-H-elongata_contig68733:1853..20751691679690.37753-CDS-H-elongata_contig68733:1853..2075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68733 1854..2075 -
1622931081.7137344-CDS-H-elongata_contig68733:2419..25681622931081.7137344-CDS-H-elongata_contig68733:2419..2568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68733 2420..2568 -
1691679690.3854098-CDS-H-elongata_contig68733:2419..25681691679690.3854098-CDS-H-elongata_contig68733:2419..2568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68733 2420..2568 -
1622931081.7306762-CDS-H-elongata_contig68733:2887..30161622931081.7306762-CDS-H-elongata_contig68733:2887..3016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68733 2888..3016 -
1691679690.39331-CDS-H-elongata_contig68733:2887..30161691679690.39331-CDS-H-elongata_contig68733:2887..3016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68733 2888..3016 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.7508857-UTR-H-elongata_contig68733:3016..30221622931081.7508857-UTR-H-elongata_contig68733:3016..3022Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68733 3017..3022 -
1691679690.4033716-UTR-H-elongata_contig68733:3016..30221691679690.4033716-UTR-H-elongata_contig68733:3016..3022Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68733 3017..3022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68733.14509.1

>prot_H-elongata_contig68733.14509.1 ID=prot_H-elongata_contig68733.14509.1|Name=mRNA_H-elongata_contig68733.14509.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=267bp
MFLKTEHDKAIECYRDVLRYKPNNYQALEKLIGLLRRAGKLSEVPELLDL
AKAGNPRSSAHAGLRFCRGLYHRYINDIHEAIHHLNFARIDGEWGRRALE
HLIEIYVSPNGDHLWEVVTGAPSDDAYAEALDVARVLLSELEKFDGEDGD
ARERERAVVTEAAMKRRYLENTVKMMGRKKNGVDGAMAGYISMLEDDKEN
VRGLLGMSLAFTLEKSPNKARNALKRIAKMPYTLEMAEEFEQAYLHLAQL
YVDRGKFDLAQVTLRRA
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mRNA from alignment at H-elongata_contig68733:228..3022-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68733.14509.1 ID=mRNA_H-elongata_contig68733.14509.1|Name=mRNA_H-elongata_contig68733.14509.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2795bp|location=Sequence derived from alignment at H-elongata_contig68733:228..3022- (Himanthalia elongata Himel1 dioecious)
CAGGTAATGTTTCTCAAAACAGAGCATGACAAGGCGATAGAGTGCTACCG GGACGTTTTAAGGTACAAGCCCAACAACTACCAGGCTTTGGAGAAGCTCA TCGGCCTCTTGAGGCGGGCAGGAAAGCTTAGCGAGGTACACCGCAGCAAG CCCTGGGTTTTACGAATCGATCTAAACCATCTAAGTAATACCTTCTCTAA ATAGAAGTGGTCCTAACGAGGCGGTGCAGGTAACAATTTTGCCGCATCCG TACGCGAGATAATGCTGATATCATAGTTCTAGACAGACATTCAAAACACT TTAAGACAAAGGATCGGTTTCCCGGTTTTTATGTGCGCTCATAAACCTCC ACTTCGGCAGAGTTATGTATATTCCTATACCACCTCAAACACTCTCCAAA TCCCCACAGTATACCAATTTGGTTGCGTCATCCGTTCATACGTCCGCTGG AAAGGTTCCGGAGTTGCTCGACCTTGCGAAAGCCGGCAATCCTCGTTCAT CAGCCCACGCTGGCCTGCGGTTTTGTCGCGGTTTGTACCACCGTTACATC AACGACATACACGAGGCTATCCATCACCTCAATTTCGCCCGAATAGACGG AGAGTGAGTTTCTAGCTGTCCTTTCGAGGGTCTGCTCATACACGCATCGA GTCCAGTACATCCATCTAACTCGTACGCGCGTTACGTTGGTAAACATTGC TGCATATTTTGGCTCGCTCGACCACGGGAAACCTCGAACGAAAAAGCTGG CGCCCGGGGCCGGGAAAACCGAGTCGGGTGGTGCATATCATGGAACGACT CCCCTACATTTTTTCCTGTTCTTACCTTGGGCGTCACCTTGCACCCCCCC TACGATTGGCTGTTGGAGCACATAATCGTGGGACTAGAATCGTCCCAGAG GTCGTTGACTTTTTGTCCATCCAATTTGTTCTGCACGAAACATCAAGGTG GGGCCGCCGCGCGTTAGAACATTTGATTGAGATTTACGTCAGTCCGAACG GTGACCACCTGTGGGAGGTGGTGACGGGCGCTCCGAGTGACGATGCGTAC GCGGAGGCTCTGGACGTAGCCAGAGTACTGCTGTCGGAGCTTGAGAAATT CGATGGGGAAGATGGGGACGCTAGGGAAAGAGAGCGGGCGGTGGTAACGG AGGCTGCCATGAAGAGAAGGTGATCGGCCGAGAGTCCCGAGGGTAATATC TAGTAGGCTGAACGTACCACTTTGTCAAATTATGACTCTTTGTTCGACGA CGGGTACATAATGCGTAAGAGTTAGGAGGGTTTCAATGATTTCATATTTT TCAAGATAAATATTTTGCTGCTGTATATTGTTTGAGTTGGAGGTTGCCAT ATATGTATTTGGCGGAATCTACGAAGAGGATGATCTTTGAAAGATGGTAA TGGTAGATATTAACTACAAAAGTTTAAATTCCAGCCGATTTATATTTAAA TCTTCTGGAAACTTTATTTTTTGCATTCCGATAAGACCCGGCCTAAATAA CTAAATGGTAGAGTCGTCTGGCAATAAATAATATCGCACGTAACGTTGTG GGTTAAATGGGGGGCGATGAAAATAAGCTTTGGTAAAAAGGCGATATAGC TGTAGTCTTGTCAGTAGGATGGGTGAAGGGAAGGAGAGGCTATCATCTCG CCCCTCGCGCATGGCCCGCAAACGCAAGATGTTGTAATAAAGAAGGTGTA AAACTTTGGTAACGCGTGTATAGCAGTGTCATTGATGCACCATCGGTACC TCCAAAGGGATACAAAAAAAAGGCACAATGATGCGGGAAGCGGCAGACAC TGGGTAATATGGGGTCAGAGAGTGTGATGGGACGGGGTATAGGGGCTTGG GTAGCTTTTATTGGATGATATCTTACGCCGTTGCTTGTTATGCGTTTTGG CCCAAAGCTATGGCCTCTGAGTTTTCGCATCGATATTGCTGGCGGAAAAT GTTGCTACGCACTTCCGTATCGTGGTCTACTGATATTATCCAACAGGATA TCCCTCGAAAAAAATTTCTATGTCACTCAAAAGGTTTCGCTGGGAAGGTT TTTAATATTGTTGTGTTGAATACAGTACGTCATCCCATTACATCTACCTA TGTTAATGTCGTTCATGTACCGTTGTCATGTGGCAGATAATATTTTCCCA TTAAACCTGGTGGTATATATATATATATATATATATATAATGTAAGTATC GAATCAATTACAGGATGGGTAGACCCAAACCAATATGTAGGTGAGTATGT GTTTGATGCGTCCTTTAGGTACTTGGAAAACACAGTGAAGATGATGGGGC GGAAAAAGAACGGCGTGGACGGGGCCATGGCGGGATACATCTCCATGCTG GAGGACGACAAGGAAAATGTACGGGGGCTGCTGGGCATGTCACTCGCATT CACGCTCGAAAAGTCTCCGAACAAGGTGAGCGACAGCGCGGTAGTTGGGT TTGCCATGGGAACGAGGTGATTTCACGAGGCACAGCTCTCGGCGCAAAGT GTGGAGAGACATATTTACGATCTCTAAGTCTCGCACATTTTTTTCCTCCA TTGGCGCTGAGGCAAGTCCTTCCGCAAAGTCATGACTTCTGCGGAGAATA ACGCAATCACTACACCACACGCCGCTTTATTTATGGTAATATGCTACCAA GGCACGCAACGCTCTCAAGCGGATCGCCAAGATGCCGTATACCCTGGAGA TGGCGGAGGAGTTCGAGCAGGCATATCTTCACCTGGCACAACTCTACGTA GACAGGGGGAAGTTCGACCTCGCTCAGGTGACCCTGCGGAGGGCA
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Coding sequence (CDS) from alignment at H-elongata_contig68733:228..3022-

>mRNA_H-elongata_contig68733.14509.1 ID=mRNA_H-elongata_contig68733.14509.1|Name=mRNA_H-elongata_contig68733.14509.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1602bp|location=Sequence derived from alignment at H-elongata_contig68733:228..3022- (Himanthalia elongata Himel1 dioecious)
ATGTTTCTCAAAACAGAGCATGACAAGGCGATAGAGTGCTACCGGGACGT
TTTAAGGTACAAGCCCAACAACTACCAGGCTTTGGAGAAGCTCATCGGCC
TCTTGAGGCGGGCAGGAAAGCTTAGCGAGATGTTTCTCAAAACAGAGCAT
GACAAGGCGATAGAGTGCTACCGGGACGTTTTAAGGTACAAGCCCAACAA
CTACCAGGCTTTGGAGAAGCTCATCGGCCTCTTGAGGCGGGCAGGAAAGC
TTAGCGAGGTTCCGGAGTTGCTCGACCTTGCGAAAGCCGGCAATCCTCGT
TCATCAGCCCACGCTGGCCTGCGGTTTTGTCGCGGTTTGTACCACCGTTA
CATCAACGACATACACGAGGCTATCCATCACCTCAATTTCGCCCGAATAG
ACGGAGAGTTCCGGAGTTGCTCGACCTTGCGAAAGCCGGCAATCCTCGTT
CATCAGCCCACGCTGGCCTGCGGTTTTGTCGCGGTTTGTACCACCGTTAC
ATCAACGACATACACGAGGCTATCCATCACCTCAATTTCGCCCGAATAGA
CGGAGAGTGGGGCCGCCGCGCGTTAGAACATTTGATTGAGATTTACGTCA
GTCCGAACGGTGACCACCTGTGGGAGGTGGTGACGGGCGCTCCGAGTGAC
GATGCGTACGCGGAGGCTCTGGACGTAGCCAGAGTACTGCTGTCGGAGCT
TGAGAAATTCGATGGGGAAGATGGGGACGCTAGGGAAAGAGAGCGGGCGG
TGGTAACGGAGGCTGCCATGAAGAGAAGGTGGGGCCGCCGCGCGTTAGAA
CATTTGATTGAGATTTACGTCAGTCCGAACGGTGACCACCTGTGGGAGGT
GGTGACGGGCGCTCCGAGTGACGATGCGTACGCGGAGGCTCTGGACGTAG
CCAGAGTACTGCTGTCGGAGCTTGAGAAATTCGATGGGGAAGATGGGGAC
GCTAGGGAAAGAGAGCGGGCGGTGGTAACGGAGGCTGCCATGAAGAGAAG
GTACTTGGAAAACACAGTGAAGATGATGGGGCGGAAAAAGAACGGCGTGG
ACGGGGCCATGGCGGGATACATCTCCATGCTGGAGGACGACAAGGAAAAT
GTACGGGGGCTGCTGGGCATGTCACTCGCATTCACGCTCGAAAAGTCTCC
GAACAAGGTACTTGGAAAACACAGTGAAGATGATGGGGCGGAAAAAGAAC
GGCGTGGACGGGGCCATGGCGGGATACATCTCCATGCTGGAGGACGACAA
GGAAAATGTACGGGGGCTGCTGGGCATGTCACTCGCATTCACGCTCGAAA
AGTCTCCGAACAAGGCACGCAACGCTCTCAAGCGGATCGCCAAGATGCCG
TATACCCTGGAGATGGCGGAGGAGTTCGAGCAGGCATATCTTCACCTGGC
ACAACTCTACGTAGACAGGGGGAAGTTCGACCTCGCTCAGGTGACCCTGC
GGAGGGCAGCACGCAACGCTCTCAAGCGGATCGCCAAGATGCCGTATACC
CTGGAGATGGCGGAGGAGTTCGAGCAGGCATATCTTCACCTGGCACAACT
CTACGTAGACAGGGGGAAGTTCGACCTCGCTCAGGTGACCCTGCGGAGGG
CA
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