mRNA_H-elongata_contig68561.14493.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig68561.14493.1 vs. uniprot
Match: D7FXC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC3_ECTSI) HSP 1 Score: 361 bits (926), Expect = 2.300e-117 Identity = 181/230 (78.70%), Postives = 201/230 (87.39%), Query Frame = 1
Query: 1 RQNKWRGTYHNIIFGFFILATSQVLILQGDITTLSGVYTFAFLGVMTLFSIGTILLKFKRPSLPREVTVSYGGTIFGILCVITAFMGNLISKPSVMSWFLIYFIAVGLVIVLVFQRVRLLKILLKITESIGIGPISSSIKEQIYELQDTPFVFFCKQADLYVINKAILYVRDNEQTNRLLVVHVSTDRESGTIKTLSKQIEMFDTMYPRIKISLLTVTGSFSPALIDWLS 690
R+NKWRGTYH IFGFF+LATSQV+ILQGDITTLSGVYTF+FLGVMTLFS+GTILLKFKRPSLPREVTVSY T+ GI CVITAF+GN++SKP V+SWFLIYF+AVG V+VLVF RVRLLKILLK + ++SSIK+Q++ELQD PFVFFCKQ D YVINKAILYVRDNE TNRL+VVH S D E TIKTLSK IEMFDTMYP+IKISLLTVTGSFSP IDWLS
Sbjct: 507 RKNKWRGTYHYTIFGFFLLATSQVIILQGDITTLSGVYTFSFLGVMTLFSVGTILLKFKRPSLPREVTVSYATTLVGITCVITAFVGNMLSKPEVVSWFLIYFMAVGFVVVLVFLRVRLLKILLKFAHPVCCDGVTSSIKDQLHELQDEPFVFFCKQPDTYVINKAILYVRDNEHTNRLIVVHCSNDVEGATIKTLSKHIEMFDTMYPKIKISLLTVTGSFSPGTIDWLS 736
BLAST of mRNA_H-elongata_contig68561.14493.1 vs. uniprot
Match: A0A6H5L6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K0_9PHAE) HSP 1 Score: 301 bits (770), Expect = 1.210e-99 Identity = 160/240 (66.67%), Postives = 181/240 (75.42%), Query Frame = 1
Query: 67 QVLILQGDITTLSGVYTFAFLGVMTLFSIGTILLKFKRPSLPREVTVSYGGTIFGILCVITAFMGNLISKPSVMSWFLIYFIAVGLVIVLVFQRVRLLKILLKITESIGIGP--------------------------------ISSSIKEQIYELQDTPFVFFCKQADLYVINKAILYVRDNEQTNRLLVVHVSTDRESGTIKTLSKQIEMFDTMYPRIKISLLTVTGSFSPALIDWLS 690
Q ++ +GDITTLSGVYTF+FLGVMTLFS+GTILLKFKRPSLPREVTVSY T+ GI CVITAF+GN++SKP V+SWFLIYF+AVG V+VLVF RVRLLKILLK + + G ++SSIK+Q++ELQD PFVFFCKQ D YVINKAILYVRDNE TNRL+VVH S D E TIKTLSK IEMFDTMYP+IKISLLTVTGSFSP IDWLS
Sbjct: 68 QFMLRKGDITTLSGVYTFSFLGVMTLFSVGTILLKFKRPSLPREVTVSYATTLVGITCVITAFVGNMLSKPEVVSWFLIYFMAVGFVVVLVFLRVRLLKILLKFAQPVCCGGRTFFFFQTRCGLARRFFPSFSIPYVFLFSEDGVTSSIKDQLHELQDEPFVFFCKQPDTYVINKAILYVRDNEHTNRLIVVHCSNDVEGATIKTLSKHIEMFDTMYPKIKISLLTVTGSFSPGTIDWLS 307
BLAST of mRNA_H-elongata_contig68561.14493.1 vs. uniprot
Match: A0A836CNH3_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH3_9STRA) HSP 1 Score: 296 bits (759), Expect = 1.520e-93 Identity = 151/230 (65.65%), Postives = 182/230 (79.13%), Query Frame = 1
Query: 1 RQNKWRGTYHNIIFGFFILATSQVLILQGDITTLSGVYTFAFLGVMTLFSIGTILLKFKRPSLPREVTVSYGGTIFGILCVITAFMGNLISKPSVMSWFLIYFIAVGLVIVLVFQRVRLLKILLKITESIGIGPISSSIKEQIYELQDTPFVFFCKQADLYVINKAILYVRDNEQTNRLLVVHVSTDRESGTIKTLSKQIEMFDTMYPRIKISLLTVTGSFSPALIDWLS 690
R N+WRGT H IIFGFF+LAT+QV +L+GDIT LSGVYTFAFLGVM++FS G I+LKFKRP LPR+VTVSY G+ V+TAF+GN+ISKP ++S+F +YFIAVGLV++ VFQR+R+LK+ + +KEQI EL+ P++FFCK DLY INKAILYVR+NEQT+RLLVVHVS D E G IK LS I MFDTMYPRIKISLLTV G+FSPALI+WLS
Sbjct: 418 RTNEWRGTNHFIIFGFFVLATTQVYLLRGDITLLSGVYTFAFLGVMSIFSSGCIILKFKRPKLPRDVTVSYAAIAIGLTFVLTAFVGNMISKPEILSYFSLYFIAVGLVVLSVFQRIRILKV--------------NFLKEQISELRSQPYLFFCKADDLYTINKAILYVRENEQTDRLLVVHVSPDTEGGHIKALSNHIMMFDTMYPRIKISLLTVEGTFSPALIEWLS 633
BLAST of mRNA_H-elongata_contig68561.14493.1 vs. uniprot
Match: A0A7S1UN14_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UN14_9STRA) HSP 1 Score: 216 bits (551), Expect = 1.400e-62 Identity = 116/249 (46.59%), Postives = 157/249 (63.05%), Query Frame = 1
Query: 4 QNKWRGTYHNIIFGFFILATSQVLILQGDITTLSGVYTFAFLGVMTLFSIGTILLKFKRPSLPREVTVSYGGTIFGILCVITAFMGNLISKPSVMSWFLIYFIAVGLVIVLVFQRVRLLKILLKITESIGIGPISSSIKEQIYELQDTPFVFFCKQADLYVINKAILYVRDNEQTNRLLVVHVST--DRESGTIK---------------------TLSKQIE-------MFDTMYPRIKISLLTVTGS 660
+N+WRGT HN FF+L+ SQV++L GD++ LSGVYTFAFLGVMT F +GTI+LKFKRPSLPREV ++Y G++CV+ F+GNL+ K +S+F Y VG+VIV++FQRVRL+K+L + S+ + +K I EL+ P +FF K ADLYV+NKA+LY+RDNEQTN L+ HV+ D + GT TL + + M D MYP++KIS L V G+
Sbjct: 417 KNRWRGTTHNTTLVFFLLSASQVIMLHGDVSGLSGVYTFAFLGVMTCFGVGTIMLKFKRPSLPREVHITYAHASLGVICVLATFLGNLMGKSDYVSYFSFYLCGVGIVIVIMFQRVRLMKLLYLVLRSLFPRSSFAGLKNIISELRSGPMIFFAKHADLYVLNKAVLYMRDNEQTNELIFAHVTPLRDGKQGTFAWLTGFSLDASAEDLLENVDADTLREDVSKMEIAARMLDEMYPKLKISFLCVQGA 665
BLAST of mRNA_H-elongata_contig68561.14493.1 vs. uniprot
Match: W7U6R6_9STRA (Transmembrane protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6R6_9STRA) HSP 1 Score: 206 bits (525), Expect = 7.820e-59 Identity = 104/229 (45.41%), Postives = 152/229 (66.38%), Query Frame = 1
Query: 1 RQNKWRGTYHNIIFGFFILATSQVLILQGDITTLSGVYTFAFLGVMTLFSIGTILLKFKRPSLPREVTVSYGGTIFGILCVITAFMGNLISKPSVMSWFLIYFIAVGLVIVLVFQRVRLLKILLKITESIGIGPISSSIKEQIYELQDTPFVFFCKQADLYVINKAILYVRDNEQTNRLLVVHVSTDRESGTIKTLSKQIEMFDTMYPRIKISLLTVTGSFSPALIDWL 687
R+N WR T HNII G+ + + VLIL+G++T LSGVY+ AFL V+ LF++GT+LLKFKRPSLPR+VTVS+ + ++ +GNL+ P V+ FL Y A G +++L+FQ LL+ + + I G + +++++ Q P +FFCK D+YV+NKA+LYV NEQ+ L+V+HV D++ LS +E FDTMYP+IK +LLT+ G F P LI++L
Sbjct: 447 RRNPWRRTTHNIILGYLVFSAVLVLILEGNVTDLSGVYSLAFLSVLLLFTVGTMLLKFKRPSLPRDVTVSWMSVVVAFTMILVGLLGNLMGNPQVLLVFLAYVAAAGTLVLLMFQWTNLLRFTVLVLRGICPGIDTGVLQKELALTQSIPAIFFCKADDVYVLNKALLYVTANEQSRHLMVIHVH-DKDQFPPPLLSTHVENFDTMYPKIKCTLLTIEGHFGPPLIEFL 674
BLAST of mRNA_H-elongata_contig68561.14493.1 vs. uniprot
Match: A0A4D9CZ99_9STRA (SET domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ99_9STRA) HSP 1 Score: 204 bits (520), Expect = 2.760e-57 Identity = 103/229 (44.98%), Postives = 152/229 (66.38%), Query Frame = 1
Query: 1 RQNKWRGTYHNIIFGFFILATSQVLILQGDITTLSGVYTFAFLGVMTLFSIGTILLKFKRPSLPREVTVSYGGTIFGILCVITAFMGNLISKPSVMSWFLIYFIAVGLVIVLVFQRVRLLKILLKITESIGIGPISSSIKEQIYELQDTPFVFFCKQADLYVINKAILYVRDNEQTNRLLVVHVSTDRESGTIKTLSKQIEMFDTMYPRIKISLLTVTGSFSPALIDWL 687
++N WR T HNII G+ + + VLIL+G++T LSGVY+ AFL V+ LF++GT+LLKFKRPSLPR+VTVS+ + ++ +GNL+ P V+ FL Y A G +++L+FQ LL+ + + I G + +++++ Q P +FFCK D+YV+NKA+LYV NEQ+ L+V+HV D++ LS +E FDTMYP+IK +LLT+ G F P LI++L
Sbjct: 447 QRNPWRRTTHNIILGYLVFSAVLVLILEGNVTDLSGVYSLAFLSVLLLFTVGTMLLKFKRPSLPRDVTVSWMSVVVAFTMILVGLLGNLMGNPQVLLVFLAYVAAAGTLVLLMFQWTNLLRFTVLVLRGICPGIDTGVLQKELALTQSIPAIFFCKADDVYVLNKALLYVTANEQSRHLMVIHVH-DKDHFPPPLLSTHVENFDTMYPKIKCTLLTIEGHFGPPLIEFL 674
BLAST of mRNA_H-elongata_contig68561.14493.1 vs. uniprot
Match: A0A1E7ERC1_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ERC1_9STRA) HSP 1 Score: 201 bits (512), Expect = 3.690e-57 Identity = 95/234 (40.60%), Postives = 153/234 (65.38%), Query Frame = 1
Query: 4 QNKWRGTYHNIIFGFFILATSQVLILQGDITTLSGVYTFAFLGVMTLFSIGTILLKFKRPSLPREVTVSYGGTIFGILCVITAFMGNLISKPSVMSWFLIYFIAVGLVIVLVFQRVRLLKILLKITESIGIGPISS-----SIKEQIYELQDTPFVFFCKQADLYVINKAILYVRDNEQTNRLLVVHVSTDRESGTIKTLSKQIEMFDTMYPRIKISLLTVTGSFSPALIDWLS 690
N W GT I+ GFF+L SQV++L D+ L GVY +AFL VMT+F++G ILLK KRP+LPRE+T S+ +I G++ V+ A +GN++ KP ++++F +YF+ +G +++++FQR + + +I ++ + + +I + + QD PFVFF K DL++ NKA+LY+R NEQTN+++ VH + + L +++ D +YPRIKISLL V +F+ ++WLS
Sbjct: 407 SNPWTGTDSFILCGFFLLCVSQVILLDSDVEALGGVYCYAFLTVMTIFALGNILLKIKRPTLPREITTSWLQSILGLVSVVIALLGNILGKPELLTYFFVYFLIIGTLVLVMFQRTQKTNLSFQIYTTMILALTTKKREIITIADTVKNFQDIPFVFFVKHDDLHMANKAVLYIRKNEQTNKIIFVHCNGTSTETSTSNLQDHVKLLDLLYPRIKISLLVVNSNFNATTVEWLS 640
BLAST of mRNA_H-elongata_contig68561.14493.1 vs. uniprot
Match: T0R2F2_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R2F2_SAPDV) HSP 1 Score: 200 bits (509), Expect = 8.660e-57 Identity = 111/245 (45.31%), Postives = 158/245 (64.49%), Query Frame = 1
Query: 1 RQNKWRGTYHNIIFGFFILATSQVLILQGDITTLSGVYTFAFLGVMTLFSIGTILLKFKRPSLPREVTVSYGGTIFGILCVITAFMGNLISKPSVMSWFLIYFIAVGLVIVLVFQRVRLLKILLKITESI-------GIGPISSS-------IKEQIYELQDTPFVFFCKQADLYVINKAILYVRDNEQTNRLLVVHVSTDRESGTIKTLSKQIEMFDTMYPRIKISLLTVTGSFSPALIDWLST 693
++N R T H I+FG+F +ATS VL+L+G++ TLSGVYT+AFLG+MTLF G +LLKFKR L R+V + I G+ VI AF GNL P+++++F +YF V LV+ L+F+R+ L++ + + + I P+++ +K + P VFFCKQADL INKAILYVR NEQT+RL++VHV D E+G + I MFD +YP++KI L+ V F PALI+W++T
Sbjct: 390 QENSCRRTNHWILFGYFGVATSLVLVLEGNVETLSGVYTYAFLGLMTLFGSGCMLLKFKRADLKRDVIAPWWACILGVSLVIVAFFGNLCGDPTILTYFALYFSCVLLVVFLMFERLFFLRLAMYVLQRICPSTRKEETKPLATGARGGRTIVKAMRRITEACPTVFFCKQADLASINKAILYVRQNEQTSRLVIVHVY-DAETGVPDLFGESIVMFDKIYPKLKIDLVAVESVFGPALIEWVAT 633
BLAST of mRNA_H-elongata_contig68561.14493.1 vs. uniprot
Match: A0A7S4EFJ8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EFJ8_9STRA) HSP 1 Score: 201 bits (510), Expect = 1.240e-56 Identity = 101/277 (36.46%), Postives = 162/277 (58.48%), Query Frame = 1
Query: 7 NKWRGTYHNIIFGFFILATSQVLILQGDITTLSGVYTFAFLGVMTLFSIGTILLKFKRPSLPREVTVSYGGTIFGILCVITAFMGNLISKPSVMSWFLIYFIAVGLVIVLVFQRVRLLKILLKI-----TESIGIGPISSS--------------------------------------------IKEQIYELQDTPFVFFCKQADLYVINKAILYVRDNEQTNRLLVVHVSTDRESGTIKTLSKQIEMFDTMYPRIKISLLTVTGSFSPALIDWLS 690
N W GT I+ GFF+L SQV++L D+ L GVY +AFL VMT+F++G ILLK KRPSLPRE+T S+ +I G++ V+ A +GN++ KP ++++F +YF+ VG +++++FQRV ++++L K+ +S+ +G + S I + + Q+TPF+FF K DL++ NKA+LY++ NEQTN+++ VH +T+ + K L + +++ D +YPR+KISLL V F ++WLS
Sbjct: 405 NPWTGTDSFILVGFFLLCVSQVIVLDCDVEALGGVYCYAFLTVMTIFALGNILLKIKRPSLPREITTSWLQSILGLIAVVIALLGNVLGKPELLTYFFVYFLIVGTLVLVMFQRVNIVRLLYKLFKSFQKKSVDVGSLYSEETEDEPLLAKKFGHVTASNDDEEDGMVSERVPEPPKRDESCLERIANTVKQFQETPFIFFMKHDDLHMANKAVLYIQKNEQTNKIIFVHCTTNSTRKSTKNLQEHVKLLDLLYPRVKISLLVVNSKFDATTVEWLS 681
BLAST of mRNA_H-elongata_contig68561.14493.1 vs. uniprot
Match: A0A3R7HF44_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HF44_9STRA) HSP 1 Score: 199 bits (505), Expect = 3.230e-56 Identity = 102/232 (43.97%), Postives = 153/232 (65.95%), Query Frame = 1
Query: 1 RQNKWRGTYHNIIFGFFILATSQVLILQGDITTLSGVYTFAFLGVMTLFSIGTILLKFKRPSLPREVTVSYGGTIFGILCVITAFMGNLISKPSVMSWFLIYFIAVGLVIVLVFQRVRLLKILLKITESIGIGPISSSIKEQIYELQDTPFVFFCKQADLYVINKAILYVRDNEQTNRLLVVHVSTDRESGT--IKTLSKQIEMFDTMYPRIKISLLTVTGSFSPALIDWLS 690
+ NK RGT H II +F+L++S VLIL D TT++GVYT++FLG+M LFS +LLK KR +PR++ + + G L ++ A NL+ P V+ +F IYFI V L + ++F+RV +L+ ++ T + G +I I ++D P VFFCK DL +INKAI+YVR NEQT+ L +VHV +D E+ T + + + +FD+MYP+I++ ++V G FSPA+I+WLS
Sbjct: 405 KTNKARGTNHYIIGLYFLLSSSLVLILNADATTVNGVYTYSFLGLMALFSCACMLLKGKRSEIPRDIHAPWAAVVIGFLLIVVAIFANLLGDPKVLMYFAIYFIVVMLAMFVMFERVTILRSEVEHTGARG----GRTIARTIVSIRDAPIVFFCKVPDLTIINKAIIYVRRNEQTHTLRIVHVFSDEEADTPVLTAFREMVTLFDSMYPKIRVDFVSVQGEFSPAMIEWLS 632 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68561.14493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig68561.14493.1 >prot_H-elongata_contig68561.14493.1 ID=prot_H-elongata_contig68561.14493.1|Name=mRNA_H-elongata_contig68561.14493.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp RQNKWRGTYHNIIFGFFILATSQVLILQGDITTLSGVYTFAFLGVMTLFSback to top mRNA from alignment at H-elongata_contig68561:251..3175- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig68561.14493.1 ID=mRNA_H-elongata_contig68561.14493.1|Name=mRNA_H-elongata_contig68561.14493.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2925bp|location=Sequence derived from alignment at H-elongata_contig68561:251..3175- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig68561:251..3175- >mRNA_H-elongata_contig68561.14493.1 ID=mRNA_H-elongata_contig68561.14493.1|Name=mRNA_H-elongata_contig68561.14493.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at H-elongata_contig68561:251..3175- (Himanthalia elongata Himel1 dioecious)back to top |