mRNA_H-elongata_contig6839.14467.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6839.14467.1 vs. uniprot
Match: D8LJF7_ECTSI (Photosystem II oxygen evolution complex protein PsbP n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF7_ECTSI) HSP 1 Score: 253 bits (646), Expect = 1.070e-79 Identity = 130/202 (64.36%), Postives = 157/202 (77.72%), Query Frame = 1
Query: 1 RQAVWMSAEEPANRAGFLTSYAALAAFASTAALPLAAIADEEVRSRLVVPLVTTKLGGQLEPFADVSKGYRLAKPIGWNRFDGEAGEYAVKMVDLVDRSKTILLYNSPVKSDTTLTMVGDIQSLGNKISKNRDLEMVKMRDRITEGIRLYDYEFKSKDRHELRTLAVNKSKLWSLAISCPEKSWKQQGEVLKTVVDSFLPRL 606
R V MSAE P++RA FLT+ AA+AA S LPL A+ADE V LVTTKLGG+LEPFADVSKGYRLAKP+GWNR+DG +GEY VKMVDLVD + ILL NSPVKSDT L+ +G +G K+SK RD+E+V RDR+TEGIRLYD+EFK R EL+TL+VNK+KLW+L + CPEK+W++Q E KT+VDSFLPRL
Sbjct: 33 RHTVRMSAEGPSDRAQFLTTSAAVAA--SAVMLPLVAVADEGETGSKQVKLVTTKLGGKLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDLVDPTTLILLTNSPVKSDTELSTLGSATQVGEKLSKGRDMELVSARDRVTEGIRLYDFEFKGGGRRELKTLSVNKNKLWNLTLGCPEKAWEKQEEPFKTIVDSFLPRL 232
BLAST of mRNA_H-elongata_contig6839.14467.1 vs. uniprot
Match: A0A6V2XVF7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2XVF7_HETAK) HSP 1 Score: 150 bits (378), Expect = 1.050e-39 Identity = 75/182 (41.21%), Postives = 119/182 (65.38%), Query Frame = 1
Query: 64 AALAAFASTAALPLAAIADEEVRSRLVVPLVTTKLGGQLEPFADVSKGYRLAKPIGWNRFDGEAGEYAVKMVDLVDRSKTILLYNSPVKSDTTLTMVGDIQSLGNKISKNRDLEMVKMRDRITEGIRLYDYEFKSKDRHELRTLAVNKSKLWSLAISCP-EKSWKQQGEVLKTVVDSFLPRL 606
AA A +TA +P+ A A+ E R T+++GG ++P+ DV+KG++L +P GW+ F GEY VK VDLV++++TI + +PVKS T++ +G++ ++G K++ +R E++ D+ITE IR Y +EFK +E+ L++NK +LWSL+ P EKSW ++ E + V SFLPRL
Sbjct: 51 AAATAAVATATVPIVAFAEPEQVER-----ATSRMGGTMDPYNDVNKGFKLMRPGGWDAFSNAPGEYDVKFVDLVNKAETITVSTTPVKSSTSIDALGEVGAVGAKLAASRGAELLSANDKITENIRAYTFEFKKGSSYEIYQLSINKGRLWSLSCVAPSEKSWAKRKEAYRVVAGSFLPRL 227
BLAST of mRNA_H-elongata_contig6839.14467.1 vs. uniprot
Match: A0A7R9Y8Q4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8Q4_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.770e-32 Identity = 61/153 (39.87%), Postives = 99/153 (64.71%), Query Frame = 1
Query: 145 VPLVTTKLGGQLEPFADVSKGYRLAKPIGWNRFDGEAGEYAVKMVDLVDRSKTILLYNSPVKSDTTLTMVGDIQSLGNKISKNRDLEMVKMRDRITEGIRLYDYEFKSKDRHELRTLAVNKSKLWSLAISCPEKSWKQQGEVLKTVVDSFLPR 603
VPL ++LGG LEP++D+ +G+RL P WN+F+ G Y V+ VDLV+ + +LL SPVKSD +L +G + +G K++ +R+ + V R TEG+ YD+EF+SK HE TLA+ +++LW+L++ K+W ++ + SF+P+
Sbjct: 71 VPLSKSRLGGVLEPYSDIQRGFRLMAPYSWNKFENGEG-YDVRWVDLVNVKENVLLRTSPVKSDASLEAIGTPEKIGEKLAASREAQCVSATARQTEGLLFYDFEFESKAAHEYATLAIARNRLWNLSVVTEPKNWSKRKASFDGIRKSFIPK 222
BLAST of mRNA_H-elongata_contig6839.14467.1 vs. uniprot
Match: A0A7S2FXS9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FXS9_9STRA) HSP 1 Score: 125 bits (315), Expect = 3.600e-31 Identity = 67/151 (44.37%), Postives = 96/151 (63.58%), Query Frame = 1
Query: 160 TKLGGQLEPFADVSKGYRLAKPIGWNRFDGEAGEYAVKMVDLVDRSKTILLYNS-PVKSDTT-LTMVGDIQSLGNKISKNRDLEMVKMRDRITEGIRLYDYEFKSKDRHELRTLAVNKSKLWSLAISCPEKSWKQQGEVLKTVVDSFLPRL 606
TK+GG LEP+ DV KG+R+ KP GWN+FD G Y +K DLV ++ +LL + PVKS TT + M+GD+ +G K+ K + E++ + EGI Y +EFK++D H+L L VNK KLWS+ S P+K W + E+ + SF+P L
Sbjct: 16 TKMGGLLEPYNDVGKGWRINKPSGWNQFDTLPGVYEMKWEDLVATNREVLLVTTTPVKSTTTSVDMLGDVTEVGRKLGKGKK-ELLSAKAVEKEGILFYMWEFKTEDGHQLLQLCVNKGKLWSVDASAPDKRWSKVSELYTNSLLSFMPTL 165
BLAST of mRNA_H-elongata_contig6839.14467.1 vs. uniprot
Match: A0A7S4BPW2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BPW2_CHRCT) HSP 1 Score: 124 bits (312), Expect = 4.180e-30 Identity = 54/148 (36.49%), Postives = 98/148 (66.22%), Query Frame = 1
Query: 160 TKLGGQLEPFADVSKGYRLAKPIGWNRFDGEAGEYAVKMVDLVDRSKTILLYNSPVKSDTTLTMVGDIQSLGNKISKNRDLEMVKMRDRITEGIRLYDYEFKSKDRHELRTLAVNKSKLWSLAISCPEKSWKQQGEVLKTVVDSFLPR 603
+++GG LEPF DV KGY+L KP+ WN+FD + G Y VK D+++ + + + +SPV + T+++ +GD+ ++G K +K+R+ E++ ++R +G +Y +E K + HE LAVN+ KL+ ++ K W ++ E+ K ++ SF+P+
Sbjct: 74 SRMGGALEPFIDVQKGYKLYKPVAWNQFDADPGVYDVKFQDVIEPFEIVQVSSSPVTTATSVSALGDVSAVGVKFAKSRNAELISAKERDADGSLVYTFELKGEMYHEYLALAVNRGKLFRVSTVTSNKRWPKREELFKNIILSFVPK 221
BLAST of mRNA_H-elongata_contig6839.14467.1 vs. uniprot
Match: A0A7S4JXM0_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JXM0_9EUKA) HSP 1 Score: 124 bits (310), Expect = 7.150e-30 Identity = 65/175 (37.14%), Postives = 108/175 (61.71%), Query Frame = 1
Query: 82 ASTAALPLA--AIADEEVRSRLVVPLVTTKLGGQLEPFADVSKGYRLAKPIGWNRFDGEAGEYAVKMVDLVDRSKTILLYNSPVKSDTTLTMVGDIQSLGNKISKNRDLEMVKMRDRITEGIRLYDYEFKSKDRHELRTLAVNKSKLWSLAISCPEKSWKQQGEVLKTVVDSFLP 600
A+ AAL LA A A+EE SRL GG LEPF D+ KGY+L KP GW ++ + G Y VK D+++ +++++ +SPV + T+++ +GD+ ++G K +K+R+ E+VK +R +G +Y E K HEL TL++N+ KL+ + + K W ++ E+ ++ SF+P
Sbjct: 50 AAVAALGLASSASAEEETFSRL---------GGLLEPFVDIQKGYKLYKPSGWTQYSIDPGVYDVKFADIIEPFESVIVSSSPVATATSISALGDLPTVGAKFAKSRNAELVKATERTADGNLVYTLELKGDVYHELLTLSINRGKLFRVTATATNKRWSKRSELYSNIMLSFVP 215
BLAST of mRNA_H-elongata_contig6839.14467.1 vs. uniprot
Match: A0A7S0NW19_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NW19_9EUKA) HSP 1 Score: 122 bits (305), Expect = 4.090e-29 Identity = 71/191 (37.17%), Postives = 109/191 (57.07%), Query Frame = 1
Query: 43 AGFLTSYAALAAFASTAALPL----AAIADEEVRSRLVVPLVTTKLGGQLEPFADVSKGYRLAKPIGWNRFDGEAGEYAVKMVDLVDRSKTILLYNSPVKSDTTLTMVGDIQSLGNKISKNRDLEMVKMRDRITEGIRLYDYEFKSKDRHELRTLAVNKSKLWSLAISCPEKSWKQQGEVLKTVVDSFLPR 603
AG ++ LAA A+T L + AA ADE K+GG LEP+ DV KGY+L +P WN+FD + G Y VK D+++ +T+ + +SPV S T+++ +GDI S+ K +K+R+ E+V +R +G LY E + HE L +N+ KL+ L+ K W ++ E+ K VV SF+P+
Sbjct: 39 AGGISRRQQLAAAAATGVLSVFGTHAASADETFN----------KMGGALEPYIDVQKGYKLYRPTAWNQFDTDPGVYDVKFQDVINSFETVQVSSSPVSSATSISALGDIASVAAKFAKSRNAELVSSSERDADGSLLYSMELQGDMYHEYLALTINRGKLFRLSTVTSNKRWSKRQELYKNVVLSFVPK 219
BLAST of mRNA_H-elongata_contig6839.14467.1 vs. uniprot
Match: A0A7S0W0N6_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W0N6_9CRYP) HSP 1 Score: 118 bits (295), Expect = 7.490e-27 Identity = 55/153 (35.95%), Postives = 95/153 (62.09%), Query Frame = 1
Query: 160 TKLGGQLEPFADVSKGYRLAKPIGWNRFDGEAGEYAVKMVDLVDRSKTILLYNSPVKSDTTLTMVGDIQSLGNKISKNRDLEMVKMRDRITEGIRLYDYEFKSKDR----HELRTLAVNKSKLWSLAISCPEKSWKQQGEVLKTVVDSFLPRL 606
+++GG LEPF D++KG++L KP GWN+FD GEY +K DLV++S+ +++ V++ ++ +GD+++LG K++ + E+V R +GI Y + FK + E+ L VNK +LWS+ + EK W ++ + V+ SF+P+L
Sbjct: 152 SRMGGLLEPFKDINKGFQLLKPRGWNQFDAAPGEYDIKWEDLVEKSEMVMVGTKEVQTAKSVDALGDVEALGKKLAAKKKAELVSAEKREVDGILFYKFIFKQGNEKVGAREVYQLCVNKGRLWSVTATTSEKRWAKREKFYDNVMMSFVPKL 304
BLAST of mRNA_H-elongata_contig6839.14467.1 vs. uniprot
Match: A0A1X6NNU3_PORUM (PsbP domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NNU3_PORUM) HSP 1 Score: 112 bits (281), Expect = 1.520e-25 Identity = 54/147 (36.73%), Postives = 89/147 (60.54%), Query Frame = 1
Query: 166 LGGQLEPFADVSKGYRLAKPIGWNRFDGEAGEYAVKMVDLVDRSKTILLYNSPVKSDTTLTMVGDIQSLGNKISKNRDLEMVKMRDRITEGIRLYDYEFKSKDRHELRTLAVNKSKLWSLAISCPEKSWKQQGEVLKTVVDSFLPRL 606
LG +E + D++KG+ + +P GWN+F+ AG+Y +K DL+ + I + +PV T+ +G ++G K++K+R E+V + EG+ Y E KS H+L TL VNKSKL+S+ +S E W ++ ++L+ V +SF P L
Sbjct: 86 LGSSVEVYKDLNKGFTILRPQGWNQFEATAGQYDIKWQDLIQPLEIITVLTTPVGKGKTVADIGTPDAVGTKLAKSRRAELVSAVSKEEEGLTYYTVELKSASVHQLTTLVVNKSKLYSVNVSSAEGKWSKREKLLRGVAESFKPSL 232
BLAST of mRNA_H-elongata_contig6839.14467.1 vs. uniprot
Match: A0A7S2FXI9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FXI9_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.700e-25 Identity = 57/150 (38.00%), Postives = 92/150 (61.33%), Query Frame = 1
Query: 163 KLGGQLEPFADVSKGYRLAKPIGWNRFDGEAGEYAVKMVDLVDRS-KTILLYNSPVKSDT-TLTMVGDIQSLGNKISKNRDLEMVKMRDRITEGIRLYDYEFKSKDRHELRTLAVNKSKLWSLAISCPEKSWKQQGEVLKTVVDSFLPRL 606
+ GG LEP++D+++G+R+ KP WN+FD G Y +K DLV + + I+L SPVKS T ++ +G ++ +G K++K RD +++ + EGI Y ++ + H+L TL V K KLW + S PE W + G + + V SF+P+L
Sbjct: 34 RAGGLLEPYSDITRGWRILKPSTWNQFDQIPGTYDMKWEDLVSLNYQQIILTTSPVKSTTVSVDALGPVEEVGLKLAKTRDAKLLSAKAFTKEGILFYLFDLQGPAVHQLLTLCVFKGKLWKVDASAPETRWAKTGPLYEKVAASFMPKL 183 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6839.14467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6839.14467.1 >prot_H-elongata_contig6839.14467.1 ID=prot_H-elongata_contig6839.14467.1|Name=mRNA_H-elongata_contig6839.14467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp MSAEEPANRAGFLTSYAALAAFASTAALPLAAIADEEVRSRLVVPLVTTKback to top mRNA from alignment at H-elongata_contig6839:6463..8464+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6839.14467.1 ID=mRNA_H-elongata_contig6839.14467.1|Name=mRNA_H-elongata_contig6839.14467.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2002bp|location=Sequence derived from alignment at H-elongata_contig6839:6463..8464+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6839:6463..8464+ >mRNA_H-elongata_contig6839.14467.1 ID=mRNA_H-elongata_contig6839.14467.1|Name=mRNA_H-elongata_contig6839.14467.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig6839:6463..8464+ (Himanthalia elongata Himel1 dioecious)back to top |