mRNA_H-elongata_contig11870.1446.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11870.1446.1
Unique NamemRNA_H-elongata_contig11870.1446.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11870.1446.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.890e-9
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 2 
Query:    2 GLNREDTSQWQSSAMD--LDADQTVTEVRLIMKGTGSGASEFYLLDARFIAATADNPTDTYRVSISSTF 202
            G    DT+ WQS  +   LDADQ +TE+ ++++GTGSGA  F +LD R +    DNPTDT  V + STF
Sbjct:  757 GFESADTADWQSFDLSQHLDADQFLTEINIVVQGTGSGAPGFAMLDIRVMGTAIDNPTDT--VYVGSTF 823
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BLAST of mRNA_H-elongata_contig11870.1446.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 2.590e-6
Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 2 
Query:    2 GLNREDTSQWQSSAMDLDADQTVTEVRLIMKGTGSGASEFYLLDARFIAATADNPTDTYRVSISSTFYW 208
            GL   D+  WQ   +    D  VTEV +IMKGTGSGA  F L +ARF+    DNP++T+ V  +    W
Sbjct:  751 GLESVDSEGWQRFELGT-IDDPVTEVTIIMKGTGSGAPGFKLANARFLGTAIDNPSNTFYVGSTYVESW 818
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BLAST of mRNA_H-elongata_contig11870.1446.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 5.830e-5
Identity = 27/69 (39.13%), Postives = 36/69 (52.17%), Query Frame = 2 
Query:    2 GLNREDTSQWQSSAMDLDADQTVTEVRLIMKGTGSGASEFYLLDARFIAATADNPTDTYRVSISSTFYW 208
            G    D+  WQ   +    D  VTE+ ++MKGTGS A  F L +ARF     DNP+DT+ V  +    W
Sbjct:  566 GFESVDSEGWQRFELGT-IDDPVTEIAIVMKGTGSEAPGFKLANARFFGTAIDNPSDTFYVGSTYVTEW 633
[Close]
BLAST of mRNA_H-elongata_contig11870.1446.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 8.020e-5
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 2 
Query:   56 ADQTVTEVRLIMKGTGSGASEFYLLDARFIAATADNPTDTYRVSISSTFYW 208
            A+Q VT + + MKGTGSGA  F +LDA  +    DNP+DT+ V  +   YW
Sbjct:  787 ANQYVTSIGIEMKGTGSGAPGFAMLDALVLGTKIDNPSDTFHVGSTFIEYW 837
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11870.1446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KL74_9PHAE6.890e-947.83F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
D7FTH1_ECTSI2.590e-643.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KH45_9PHAE5.830e-539.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFA6_9PHAE8.020e-547.06F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11870contigH-elongata_contig11870:3217..4065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11870.1446.1prot_H-elongata_contig11870.1446.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11870 3260..4022 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929694.229317-UTR-H-elongata_contig11870:3216..32591622929694.229317-UTR-H-elongata_contig11870:3216..3259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11870 3217..3259 +
1691679121.6665292-UTR-H-elongata_contig11870:3216..32591691679121.6665292-UTR-H-elongata_contig11870:3216..3259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11870 3217..3259 +
1622929694.269029-UTR-H-elongata_contig11870:4022..40651622929694.269029-UTR-H-elongata_contig11870:4022..4065Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11870 4023..4065 +
1691679121.6939461-UTR-H-elongata_contig11870:4022..40651691679121.6939461-UTR-H-elongata_contig11870:4022..4065Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11870 4023..4065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929694.245356-CDS-H-elongata_contig11870:3259..34231622929694.245356-CDS-H-elongata_contig11870:3259..3423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11870 3260..3423 +
1691679121.6755595-CDS-H-elongata_contig11870:3259..34231691679121.6755595-CDS-H-elongata_contig11870:3259..3423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11870 3260..3423 +
1622929694.258142-CDS-H-elongata_contig11870:3991..40221622929694.258142-CDS-H-elongata_contig11870:3991..4022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11870 3992..4022 +
1691679121.6850011-CDS-H-elongata_contig11870:3991..40221691679121.6850011-CDS-H-elongata_contig11870:3991..4022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11870 3992..4022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11870.1446.1

>prot_H-elongata_contig11870.1446.1 ID=prot_H-elongata_contig11870.1446.1|Name=mRNA_H-elongata_contig11870.1446.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MDLDADQTVTEVRLIMKGTGSGASEFYLLDARFIAATADNPTDTYRVSIS
STFYWYRFPWASTT*
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mRNA from alignment at H-elongata_contig11870:3217..4065+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11870.1446.1 ID=mRNA_H-elongata_contig11870.1446.1|Name=mRNA_H-elongata_contig11870.1446.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=849bp|location=Sequence derived from alignment at H-elongata_contig11870:3217..4065+ (Himanthalia elongata Himel1 dioecious)
GGGTTTGAACCGCGAGGATACCTCCCAGTGGCAATCGTCTGCGATGGATC
TCGACGCCGATCAGACTGTGACCGAGGTCCGCCTCATCATGAAAGGAACC
GGCTCGGGCGCCTCAGAGTTTTACCTACTCGACGCGAGGTTTATCGCAGC
CACTGCCGATAATCCCACCGACACCTACCGTGTAAGCATCTCATCTACAT
TTTATTGGTGAGCACCCTAGACTGGAAGTTTTCCAAATCTATGTTGCTTA
ACCTGGTTGAGGCCTCAAGCCTACCTCGTTGGGTGTTCCGTCTTGGCTGC
AAAAATATGCTTATACAGATCGCTTCACCGCGCATCAAAGAGTGGACAGG
GTCACTCTACTCTAATTTTGTCGGGGAGGGTAGAAGTGACCGGAAGGCTA
TAATGGGGTCTATCTGTGCAGTACAAAAGGCTTCATTCGATGGTGTGGAC
TGCGTGGGCGAGGACGCCTCGGCGATTGGAACGGTAATATAAGTTTGATG
CTTCGTGTTTACAATTCCCTGCCTACTCGTCCACCTTCTGCTAATGTCAG
TCGATTGAATGCTTGAAGTGCTAACATCCGCGAATAATGCAGAATTAAGG
AATAGATGTTCCAATTTTCATCGGGTTGAATGTCATACACCTCAGCACCG
TAGTCTTGTCAATGTGCGCAAATGAGTGTTACTTGCGTACTAGCATTATG
GTATGTTCGACACCGTGATACATCGTTCATCCTGTAGTACTCTGTACGGC
TCTGGCACTTATAAACTGTTCGCAGGTATCGTTTTCCATGGGCGAGTACT
ACGTAAACAGATATATCTTTATGAAGTCGGGCGTCTTCCTCAACGGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig11870:3217..4065+

>mRNA_H-elongata_contig11870.1446.1 ID=mRNA_H-elongata_contig11870.1446.1|Name=mRNA_H-elongata_contig11870.1446.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig11870:3217..4065+ (Himanthalia elongata Himel1 dioecious)
ATGGATCTCGACGCCGATCAGACTGTGACCGAGGTCCGCCTCATCATGAA
AGGAACCGGCTCGGGCGCCTCAGAGTTTTACCTACTCGACGCGAGGTTTA
TCGCAGCCACTGCCGATAATCCCACCGACACCTACCGTGTAAGCATCTCA
TCTACATTTTATTGATGGATCTCGACGCCGATCAGACTGTGACCGAGGTC
CGCCTCATCATGAAAGGAACCGGCTCGGGCGCCTCAGAGTTTTACCTACT
CGACGCGAGGTTTATCGCAGCCACTGCCGATAATCCCACCGACACCTACC
GTGTAAGCATCTCATCTACATTTTATTGGTATCGTTTTCCATGGGCGAGT
ACTACGTAAGTATCGTTTTCCATGGGCGAGTACTACGTAA
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