mRNA_H-elongata_contig67942.14407.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67942.14407.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE) HSP 1 Score: 293 bits (749), Expect = 1.680e-98 Identity = 145/178 (81.46%), Postives = 165/178 (92.70%), Query Frame = 1
Query: 1 MSITRTGSIDPFRHAMHEVFDSMERDLMAPSGMSSRFPTTDSPGRSISLFSAIPTVGGKGGLGMNLDFHETSEGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREEKSEGDNEQRKYHFVERSYGKTTRSVRLPDTADFSKASAAYLDGVLKLNFPKREPTSSRRIQIPIGD 534
MS++R GSIDPFR AMH+VFDSMERDLMAPSGMSSRF T D PG S++L SA+P++G +GGLGMNLDFHET++G+ELSADLPGMKKEDI VDID+ESGVLTVTGER+QEREEKSEGDNEQRKYHF+ERSYGKTTRSVRLPDTA SKASA Y++GVLK+NFPKREP S+RR+QIPIGD
Sbjct: 1 MSLSRAGSIDPFRRAMHDVFDSMERDLMAPSGMSSRFHTMDFPGSSVALVSAVPSMGVEGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFLERSYGKTTRSVRLPDTAATSKASAEYVNGVLKINFPKREPPSARRLQIPIGD 178
BLAST of mRNA_H-elongata_contig67942.14407.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI) HSP 1 Score: 184 bits (468), Expect = 1.550e-55 Identity = 94/165 (56.97%), Postives = 123/165 (74.55%), Query Frame = 1
Query: 46 MHEVFDSMERDLMAPSGMSSRFPTTDSPGRSISLFSAIPTV---GGKGGLGMNLDFHETSEGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREEKSEGDNEQRKYHFVERSYGKTTRSVRLPDTADFSKASAAYLDGVLKLNFPKREPTSSRRIQIPIG 531
+++VF S+ER+++AP G++SRFPTT +F PT G LGM+LDFHET +GFEL ADLPGMKKED+++D+D ESGVLTV+GER+ E+EEK +G + RKYHFVERSYGKT+RSVRLP+ AD + A+A DGVL + FPK+E S R +IP+G
Sbjct: 20 INDVFGSIEREMLAPWGLASRFPTTRD------MFPTFPTSLFGDGSRSLGMSLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSEKEEKGDGKDGDRKYHFVERSYGKTSRSVRLPEAADTATANADLTDGVLTITFPKKEAPVSSRFRIPLG 178
BLAST of mRNA_H-elongata_contig67942.14407.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE) HSP 1 Score: 162 bits (411), Expect = 2.550e-47 Identity = 86/153 (56.21%), Postives = 111/153 (72.55%), Query Frame = 1
Query: 79 LMAPSGMSSRFPTTDS--PGRSISLFSAIPTVGGKGGLGMNLDFHETSEGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREEKSEGDNEQRKYHFVERSYGKTTRSVRLPDTADFSKASAAYLDGVLKLNFPKREPTSSRRIQIPIG 531
++AP G++ RFPT P S SLF G L MNLDFHET +GFEL ADLPGMK+ED+++D+D ESGVLTV+GER+ +REEK + + RKYHFVERSYGKT+RSVRLP+ A+ + A+A DGVL + FPK+E +S R +IP+G
Sbjct: 1 MLAPWGLAFRFPTARDMVPSVSSSLFRD-----GSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKREEKRDDKDGDRKYHFVERSYGKTSRSVRLPEAANTANANADLTDGVLTITFPKKEAPASSRFRIPLG 148
BLAST of mRNA_H-elongata_contig67942.14407.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE) HSP 1 Score: 162 bits (409), Expect = 2.890e-46 Identity = 93/202 (46.04%), Postives = 120/202 (59.41%), Query Frame = 1
Query: 52 EVFDSMERDLMAPSGMSSRFPTTDS------------------------------------------PGRSISLFSAIPTVGGKGGLGMNLDFHETSEGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREEKSEGDNEQRKYHFVERSYGKTTRSVRLPDTADFSKASAAYLDGVLKLNFPKREPTSSRRIQIPIG 531
+VF S+ER+++AP G++SRFPT P S SLF G L MNLDFHET +GFEL ADLPGMK+ED+++D+D ESGVLTV+GER+ EREEK + + RKYHFVERSYGKT+RSVRLP+ A+ + A+A DGVL + FPK+E +S R +IP+G
Sbjct: 7 DVFGSIEREMLAPWGLASRFPTASHMRYSTLRVHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXRDMVPSVSSSLFRD-----GSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSEREEKRDDKDGDRKYHFVERSYGKTSRSVRLPEAANTANANADLTDGVLTITFPKKEAPASSRFRIPLG 203
BLAST of mRNA_H-elongata_contig67942.14407.1 vs. uniprot
Match: A0A0S7YIY3_9DELT (SHSP domain-containing protein n=1 Tax=Deltaproteobacteria bacterium SG8_13 TaxID=1703398 RepID=A0A0S7YIY3_9DELT) HSP 1 Score: 100 bits (250), Expect = 1.640e-23 Identity = 63/167 (37.72%), Postives = 87/167 (52.10%), Query Frame = 1
Query: 28 DPFRHAMHEVFDSMERDLMAPSGMSSRFPTTDSPGRSISLFSAIPTVGGKGGLGMNLDFHETSEGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREEKSEGDNEQRKYHFVERSYGKTTRSVRLPDTADFSKASAAYLDGVLKLNFPKREPTSSRRIQIPI 528
DPFR M ++FD R L P S T G +D ET F + A++P ++KED+ V +DN G+LT+ GER+QE+EEK+ +KYH VER YG TRS LPD D SK +AA+ DG+L L PK E + + I++ +
Sbjct: 7 DPFRE-MEDMFDRYSRALSFPRRGSQEVMAT-------------------GDWAPRVDIAETDREFTIKAEIPDVRKEDVKVTVDN--GILTIKGERKQEKEEKN------KKYHRVERWYGSFTRSFTLPDNVDESKITAAFKDGMLNLTIPKTEASKPKAIEVQV 145
BLAST of mRNA_H-elongata_contig67942.14407.1 vs. uniprot
Match: A0A0D2UFN1_CAPO3 (Small HspC2 heat shock protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UFN1_CAPO3) HSP 1 Score: 99.8 bits (247), Expect = 1.030e-22 Identity = 54/109 (49.54%), Postives = 78/109 (71.56%), Query Frame = 1
Query: 196 LDFHETSEGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREEKSEGDNEQRKYHFVERSYGKTTRSVRLPDTADFSKASAAYLDGVLKLNFPKREPTSSRRIQI 522
+D HE+S+G+ +SADLPGMKK++I+V+ +N G+LT++GE++QE +EKS+ YH ERS G+ +R++RLP AD SKA+A Y DGVL L+ KR + RI I
Sbjct: 76 VDVHESSDGYHISADLPGMKKDEISVNCEN--GILTISGEKKQE-QEKSDHT-----YHVFERSVGRVSRTLRLPRDADSSKANAKYTDGVLTLDIAKRALPAGSRIAI 176
BLAST of mRNA_H-elongata_contig67942.14407.1 vs. uniprot
Match: A0A3C1Z549_9BACT (Heat-shock protein Hsp20 n=2 Tax=Nitrospira TaxID=1234 RepID=A0A3C1Z549_9BACT) HSP 1 Score: 98.6 bits (244), Expect = 1.470e-22 Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 1
Query: 154 AIPTVGGKGGLGMNL----------DFHETSEGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREEKSEGDNEQRKYHFVERSYGKTTRSVRLPDTADFSKASAAYLDGVLKLNFPKREPTSSRRIQIPIG 531
A P GG G G + D ET + + A+LP +K+ED+ V + E GVLT+ GER+QE+EEK +KYH VERSYG+ R+ LPDT D SK A Y DG+L L+ PK E ++I++ +
Sbjct: 24 ANPASGGSVGQGKEVMTVADWTPTVDISETEAEYAIKAELPEVKREDVKVTV--EDGVLTIQGERKQEKEEKG------KKYHRVERSYGRFVRTFTLPDTVDESKVKAEYADGILHLHLPKSEKAKPKQIEVKVA 151
BLAST of mRNA_H-elongata_contig67942.14407.1 vs. uniprot
Match: UPI0008340C1D (Hsp20/alpha crystallin family protein n=1 Tax=Halofilum ochraceum TaxID=1611323 RepID=UPI0008340C1D) HSP 1 Score: 99.0 bits (245), Expect = 2.970e-22 Identity = 67/176 (38.07%), Postives = 94/176 (53.41%), Query Frame = 1
Query: 13 RTGSIDPFRHAMHEVFDSMERDLMAPSG--MSSRFPTTDSPGRSISLFSAIPTVGGKGGLGM--NLDFHETSEGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREEKSEGDNEQRKYHFVERSYGKTTRSVRLPDTADFSKASAAYLDGVLKLNFPKREPT--SSRRIQI 522
R G + R M+ +FD +AP+G + D GR F + +GGL D ET E +EL DLPGMKK+D+ VD + G+LT++GERR ERE++ +G Y+ ERSYG RS R+P++ D +A + DGVL + PK E + +SRRI I
Sbjct: 23 RGGGLSSLRSEMNRLFDRFGGRGVAPAGGRRTGDLAAFDPFGRD--PFELLENALAEGGLESFGRADLSETDEAYELQVDLPGMKKDDVAVDYSD--GILTISGERRDEREDERKG------YYLSERSYGAYRRSFRVPESVDHDSIAARFSDGVLTVKLPKTEESRETSRRIDI 188
BLAST of mRNA_H-elongata_contig67942.14407.1 vs. uniprot
Match: D8PFX6_9BACT (Heat shock protein, Hsp20 family n=5 Tax=Nitrospira TaxID=1234 RepID=D8PFX6_9BACT) HSP 1 Score: 97.4 bits (241), Expect = 4.090e-22 Identity = 63/169 (37.28%), Postives = 90/169 (53.25%), Query Frame = 1
Query: 28 DPFRHAMHEVFDSMERDLMAPSGMSSRFPTTDSPGRSI-SLFSAIPTVGGKGGLGMNLDFHETSEGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREEKSEGDNEQRKYHFVERSYGKTTRSVRLPDTADFSKASAAYLDGVLKLNFPKREPTSSRRIQIPIG 531
DPFR + E+ D + R + PS T G+ + ++ PTV D ET + + A+LP +KKED+ V + E VLT+ GER+QE+E+K +KYH +ERSYG+ RS LPD+ D SK A Y DG+L L+ PK E ++I + I
Sbjct: 7 DPFRE-LEEMSDRLNRMIARPST-----GTPAGQGKEVMTVADWTPTV----------DISETESEYAIKAELPEVKKEDVKVTV--EDAVLTIQGERKQEKEDKG------KKYHRIERSYGRFVRSFTLPDSVDESKVRAEYADGILHLHLPKSEKAKPKQIDVKIS 151
BLAST of mRNA_H-elongata_contig67942.14407.1 vs. uniprot
Match: A0A1W9GA54_9BACT (Heat-shock protein Hsp20 n=1 Tax=Nitrospira sp. SG-bin2 TaxID=1827377 RepID=A0A1W9GA54_9BACT) HSP 1 Score: 97.1 bits (240), Expect = 5.320e-22 Identity = 62/168 (36.90%), Postives = 89/168 (52.98%), Query Frame = 1
Query: 28 DPFRHAMHEVFDSMERDLMAPSGMSSRFPTTDSPGRSISLFSAIPTVGGKGGLGMNLDFHETSEGFELSADLPGMKKEDITVDIDNESGVLTVTGERRQEREEKSEGDNEQRKYHFVERSYGKTTRSVRLPDTADFSKASAAYLDGVLKLNFPKREPTSSRRIQIPIG 531
DPFR + E+ D + R P+ + +++ +PTV D E+ + + A+LP +KKED+ V + E GVLT++GERRQE+EEK +KYH VERSYG RS LP++ D S A Y DGVL L+ PK E + I++ +G
Sbjct: 7 DPFRE-LEEMSDRLNRAFARPA-------LRNGGKEHLTVADWVPTV----------DISESEGEYLIKAELPEVKKEDVKVSV--EDGVLTLSGERRQEKEEKG------KKYHRVERSYGSFVRSFSLPESVDESGVKAQYTDGVLNLHLPKTEKVKPKSIEVKVG 148 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67942.14407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67942.14407.1 >prot_H-elongata_contig67942.14407.1 ID=prot_H-elongata_contig67942.14407.1|Name=mRNA_H-elongata_contig67942.14407.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp MSITRTGSIDPFRHAMHEVFDSMERDLMAPSGMSSRFPTTDSPGRSISLFback to top mRNA from alignment at H-elongata_contig67942:1105..3221+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67942.14407.1 ID=mRNA_H-elongata_contig67942.14407.1|Name=mRNA_H-elongata_contig67942.14407.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2117bp|location=Sequence derived from alignment at H-elongata_contig67942:1105..3221+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67942:1105..3221+ >mRNA_H-elongata_contig67942.14407.1 ID=mRNA_H-elongata_contig67942.14407.1|Name=mRNA_H-elongata_contig67942.14407.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig67942:1105..3221+ (Himanthalia elongata Himel1 dioecious)back to top |