mRNA_H-elongata_contig67908.14402.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: D8LK31_ECTSI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK31_ECTSI) HSP 1 Score: 303 bits (777), Expect = 1.370e-99 Identity = 152/230 (66.09%), Postives = 171/230 (74.35%), Query Frame = 1
Query: 1 RLVLREELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAG-RDPERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRLVKSIDG------VTENASPTASGECWVEGERSPEAVHLLESCSGMASRLAELDPMHAKFYEFVNRGGSV 669
R L +LALCA FLELDGRNFHCWAHRMWVAE MGLSA E+FDFTT KIKQNFSNYSAFHFRSK+LPRM+ EA D WQLLSDEL+L HDAMFTEPADQSVWWYH FLLTWA + D ERYE ILR EA+TL ELIEVE RCKWAE+ALLLV+QRL +++ + G S EA + ESC GMA+RL+ELDPMH +FYEFV +GG+V
Sbjct: 155 RSALAGDLALCATFLELDGRNFHCWAHRMWVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGTDSCSDSERYENILRAEAATLGELIEVEVRCKWAEVALLLVSQRLANALEPRPQPPRAQDXXXXXXXXXVTAAGNGSTEAGEVRESCRGMAARLSELDPMHGRFYEFVEKGGTV 384
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: A0A835Z1Z5_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z5_9STRA) HSP 1 Score: 185 bits (470), Expect = 4.380e-54 Identity = 99/213 (46.48%), Postives = 128/213 (60.09%), Query Frame = 1
Query: 13 REELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMI-GEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDP-ERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRLVKSIDGVTENASPTASGECWVEGERSPEAVHLLESCSGMASRLAELDPMHAKFYE 645
R EL LC QFL LD RNFHCWA+R WV E GLSAEEDF FTT KI +NFSNYSAFH+RSKLLP + + L+ ELE+ H A FTEP DQS WWYH+FL+ WA E++ G + ++Y ++L+ E ++EL+ VE RCKWA LVT L + + A T E V L+ + + L ++DPMH +Y+
Sbjct: 142 RRELELCRQFLLLDSRNFHCWAYRGWVVEQAGLSAEEDFAFTTEKILENFSNYSAFHYRSKLLPAVAEARGAGGVLTLVEQELEMVHQAFFTEPDDQSAWWYHRFLVGWAAEALHGTEHHDKYPELLQKEVDCIRELLFVEERCKWA-----LVT--LHHLLCALARTAQDT-------------EGVELMAEARSLVTTLVDVDPMHKSYYD 334
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: M4C4N4_HYAAE (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4N4_HYAAE) HSP 1 Score: 137 bits (344), Expect = 1.160e-35 Identity = 81/214 (37.85%), Postives = 119/214 (55.61%), Query Frame = 1
Query: 10 LREELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRL--VKSIDGVTENASPTASGECWVEGERSPEAVHLLESCSGMASRLAELDPMHAKFYE 645
L++E+ LC + L+LD RNFHCW +R V E+ G+S + FTT KI+QNFSNYSA H RS +LP I +LS E+EL A+FTEP DQS W+Y+++LLT + + PE L+T+ L++L+E+E KW + L V R+ + S+DG W + ++ ++ L E R +LDP H ++YE
Sbjct: 114 LKKEIGLCDKLLDLDERNFHCWNYRRHVCEMAGVSKTDQLAFTTKKIEQNFSNYSALHHRSTVLPEPITV------DVLSSEIELVQQAVFTEPDDQSAWFYYRWLLT-SMLDLMESSPEDAAGFLKTQVQWLEQLLEMEKDAKWVVVTLADVRGRVGAMTSVDG-------------WQDSKK--QSAELYE-------RAIKLDPSHRRYYE 298
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: UPI000644DC6F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DC6F) HSP 1 Score: 135 bits (339), Expect = 7.470e-35 Identity = 71/151 (47.02%), Postives = 99/151 (65.56%), Query Frame = 1
Query: 19 ELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQL---LSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALL 462
EL LC++ L+LD RNFHCW++R +V E GL E+++ +TT KI+QNFSNYSA+H RS L+P M + +P QL L +E EL +A+FTEP DQS W YH++L+ K ++ G D Y+++ E + ELIE+E CKW LL
Sbjct: 128 ELKLCSKLLDLDLRNFHCWSYRRFVGEKSGLPLEKEYAYTTTKIEQNFSNYSAWHQRSALIPLM----NTEPQQLFEKLKEEFELVRNAVFTEPKDQSSWIYHKWLVGTMK-AIPGCD---YKEVFNAEVEAINELIEIEPDCKWPIYTLL 270
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: A0A0P1AIP1_PLAHL (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIP1_PLAHL) HSP 1 Score: 134 bits (337), Expect = 3.690e-34 Identity = 82/216 (37.96%), Postives = 117/216 (54.17%), Query Frame = 1
Query: 10 LREELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRLVKSIDGVTENASPTASGECWVEGERSPEAVHLLESCSGMASRLAELDPMHAKFYEFVNR 657
L++E+ LC + L LD RNFHCW +R V E+ + E+ FTT KI+QNFSNYSA H RS LP+ + +++ DE+EL A+FTEP DQS W+Y+++L+T E V E + L+ +A L+EL+E+E KWA + L + RL GV N W E + VH L+ + R LDP H +Y+ + R
Sbjct: 129 LQKEIGLCDKLLNLDERNFHCWNYRRHVCELANVPKEDQLAFTTQKIEQNFSNYSALHHRSINLPKPLTA------EVIFDEIELIQQAVFTEPDDQSAWFYYRWLVTSMVELVKS-SAENAVEFLKKQAQWLEELVEMEAEAKWAIVTLADICGRL-----GVIINVGG------WEEAK-----VHCLD----LYDRAIALDPDHRSYYDDMKR 317
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: A0A0M0JE27_9EUKA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JE27_9EUKA) HSP 1 Score: 132 bits (331), Expect = 3.190e-33 Identity = 72/175 (41.14%), Postives = 99/175 (56.57%), Query Frame = 1
Query: 19 ELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDP----WQLLSDELELAHDAMFTEPADQSVWWYHQFLLTW-AKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRLVKSIDGVTENASPTAS 528
EL L A+ L LD RNFHCW +R V V G++AE + FTT KI+ NFSNYSA+H+RSKLLP + A + +L +ELEL +A FT P D S W+YH++L+ A + A P +E ++R E + EL+E+E CKW A + + L G E A+
Sbjct: 127 ELKLTAKLLALDDRNFHCWTYRRNVVRVAGVTAEAELAFTTTKIQANFSNYSAWHYRSKLLPAVHASAGAEGAAQLGAVLRNELELVRNAFFTAPEDSSAWFYHRWLIAQLAPGAAAALPPAEFEALVRAELQMVDELLELEPECKWPLAAAAFLGRTLDTHQMGSEETTGAAAT 301
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: A0A8K1CD87_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD87_PYTOL) HSP 1 Score: 130 bits (326), Expect = 8.310e-33 Identity = 75/211 (35.55%), Postives = 115/211 (54.50%), Query Frame = 1
Query: 10 LREELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRLVKSIDGVTENASPTASGECWVEGERSPEAVHLLESCSGMASRLAELDPMHAKFY 642
L++E+ALC + L+LD RNFHCW +R V ++ G+S E++ F T KI+QNFSNYSA H RS LP+ + ++L DE+ + A+FTEP DQS W+Y+++L+T + V +P + L ++ L EL+E+E KW + L + +RL S+ + AS A E +L +DP HA++Y
Sbjct: 134 LKKEIALCNRLLDLDERNFHCWNYRRHVCQLAGVSREDELAFATLKIEQNFSNYSALHHRSITLPKPLTR------EILHDEIGIVQQAVFTEPDDQSAWFYYRWLVT-SMLDVVQSEPSEAVEFLDSQIQWLLELLEMESEAKWVLVTLADLQRRL--SVAQTEDEAS----------------ASQAKEQSRVYYKQLLSVDPDHAQYY 319
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: A0A060T808_BLAAD (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T808_BLAAD) HSP 1 Score: 130 bits (326), Expect = 8.660e-33 Identity = 77/216 (35.65%), Postives = 113/216 (52.31%), Query Frame = 1
Query: 19 ELALCAQFLELDGRNFHCWAHRMWVAEVMGLS-----AEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRLVKSIDGVTENASPTASGECWVEGERSPEAVHLLESCSGMASRLAELDPMHAKFYEFV 651
ELA+ ++ LELD RNFH W +R +V + S + +FD+TT+KI NFSN+SA+H R+KL+PR++ E +DP +LL ELE A++T+P DQS W YH++LL+ + V KI+ E +++EL E+E KW AL+ Q L K E P L+ S+L + DPM Y++V
Sbjct: 128 ELAIVSKMLELDSRNFHGWHYRRYVVGELEKSHDNSLVKSEFDYTTSKINANFSNFSAWHQRAKLIPRLLKETGQDPRELLYSELEYIRQALYTDPDDQSSWIYHRWLLS-TDQIVPDLSANERAKIITNEIKSIEELDEIEPDNKWCMDALVFYGQLLAKV--------------------ESRPLTAEELDQARKRLSKLKQTDPMRKNRYQYV 322
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: A0A151ZSE4_9MYCE (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZSE4_9MYCE) HSP 1 Score: 129 bits (324), Expect = 1.220e-32 Identity = 67/150 (44.67%), Postives = 98/150 (65.33%), Query Frame = 1
Query: 19 ELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALLLV 468
EL LC++ L+LD RNFHCW++R ++ + G+ ++FD+TT KI+QNFSNYSA+H RS LL ++ E S + L +ELE +A++TEP DQS W YH++L K VA + Y+ IL++E + EL+E+E CKW LL+
Sbjct: 130 ELKLCSKLLDLDLRNFHCWSYRRFILKHSGIPLTQEFDYTTKKIEQNFSNYSAWHQRSSLLTKIYTEPS-ELASKLKEELEWVRNAVYTEPKDQSSWVYHKWLTGTLKPIVATTE---YKDILKSELGPITELMELEPDCKWPLYISLLL 275
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: F4PXZ6_CAVFA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PXZ6_CAVFA) HSP 1 Score: 127 bits (320), Expect = 4.540e-32 Identity = 66/154 (42.86%), Postives = 96/154 (62.34%), Query Frame = 1
Query: 19 ELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRL 480
EL LC + L+LD RNFHCW++R +V E G+ E++F +TT KI+QNFSNYSA+H RS L+P+M + + ++ L +E E +A+FTEP DQS W YH++L+ K+ Y+ +L +E + LIE+E CKW LL + L
Sbjct: 128 ELKLCYKLLDLDLRNFHCWSYRRFVEERSGMPMEKEFGYTTEKIEQNFSNYSAWHQRSSLIPQMYPQPEQ-LFEKLKEEFEWVRNAVFTEPKDQSCWIYHKWLVGTIKKIPNCN----YKDVLLSEVDEINGLIEIEPDCKWPIYTLLTLKMEL 276 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67908.14402.1 >prot_H-elongata_contig67908.14402.1 ID=prot_H-elongata_contig67908.14402.1|Name=mRNA_H-elongata_contig67908.14402.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp RLVLREELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIback to top mRNA from alignment at H-elongata_contig67908:43..2096+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67908.14402.1 ID=mRNA_H-elongata_contig67908.14402.1|Name=mRNA_H-elongata_contig67908.14402.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2054bp|location=Sequence derived from alignment at H-elongata_contig67908:43..2096+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67908:43..2096+ >mRNA_H-elongata_contig67908.14402.1 ID=mRNA_H-elongata_contig67908.14402.1|Name=mRNA_H-elongata_contig67908.14402.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig67908:43..2096+ (Himanthalia elongata Himel1 dioecious)back to top |