mRNA_H-elongata_contig67908.14402.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67908.14402.1
Unique NamemRNA_H-elongata_contig67908.14402.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: D8LK31_ECTSI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK31_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 1.370e-99
Identity = 152/230 (66.09%), Postives = 171/230 (74.35%), Query Frame = 1
Query:    1 RLVLREELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAG-RDPERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRLVKSIDG------VTENASPTASGECWVEGERSPEAVHLLESCSGMASRLAELDPMHAKFYEFVNRGGSV 669
            R  L  +LALCA FLELDGRNFHCWAHRMWVAE MGLSA E+FDFTT KIKQNFSNYSAFHFRSK+LPRM+ EA  D WQLLSDEL+L HDAMFTEPADQSVWWYH FLLTWA +      D ERYE ILR EA+TL ELIEVE RCKWAE+ALLLV+QRL  +++         +             G  S EA  + ESC GMA+RL+ELDPMH +FYEFV +GG+V
Sbjct:  155 RSALAGDLALCATFLELDGRNFHCWAHRMWVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGTDSCSDSERYENILRAEAATLGELIEVEVRCKWAEVALLLVSQRLANALEPRPQPPRAQDXXXXXXXXXVTAAGNGSTEAGEVRESCRGMAARLSELDPMHGRFYEFVEKGGTV 384          
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: A0A835Z1Z5_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z5_9STRA)

HSP 1 Score: 185 bits (470), Expect = 4.380e-54
Identity = 99/213 (46.48%), Postives = 128/213 (60.09%), Query Frame = 1
Query:   13 REELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMI-GEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDP-ERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRLVKSIDGVTENASPTASGECWVEGERSPEAVHLLESCSGMASRLAELDPMHAKFYE 645
            R EL LC QFL LD RNFHCWA+R WV E  GLSAEEDF FTT KI +NFSNYSAFH+RSKLLP +     +     L+  ELE+ H A FTEP DQS WWYH+FL+ WA E++ G +  ++Y ++L+ E   ++EL+ VE RCKWA     LVT  L   +  +   A  T             E V L+     + + L ++DPMH  +Y+
Sbjct:  142 RRELELCRQFLLLDSRNFHCWAYRGWVVEQAGLSAEEDFAFTTEKILENFSNYSAFHYRSKLLPAVAEARGAGGVLTLVEQELEMVHQAFFTEPDDQSAWWYHRFLVGWAAEALHGTEHHDKYPELLQKEVDCIRELLFVEERCKWA-----LVT--LHHLLCALARTAQDT-------------EGVELMAEARSLVTTLVDVDPMHKSYYD 334          
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: M4C4N4_HYAAE (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4N4_HYAAE)

HSP 1 Score: 137 bits (344), Expect = 1.160e-35
Identity = 81/214 (37.85%), Postives = 119/214 (55.61%), Query Frame = 1
Query:   10 LREELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRL--VKSIDGVTENASPTASGECWVEGERSPEAVHLLESCSGMASRLAELDPMHAKFYE 645
            L++E+ LC + L+LD RNFHCW +R  V E+ G+S  +   FTT KI+QNFSNYSA H RS +LP  I         +LS E+EL   A+FTEP DQS W+Y+++LLT +   +    PE     L+T+   L++L+E+E   KW  + L  V  R+  + S+DG             W + ++  ++  L E       R  +LDP H ++YE
Sbjct:  114 LKKEIGLCDKLLDLDERNFHCWNYRRHVCEMAGVSKTDQLAFTTKKIEQNFSNYSALHHRSTVLPEPITV------DVLSSEIELVQQAVFTEPDDQSAWFYYRWLLT-SMLDLMESSPEDAAGFLKTQVQWLEQLLEMEKDAKWVVVTLADVRGRVGAMTSVDG-------------WQDSKK--QSAELYE-------RAIKLDPSHRRYYE 298          
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: UPI000644DC6F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DC6F)

HSP 1 Score: 135 bits (339), Expect = 7.470e-35
Identity = 71/151 (47.02%), Postives = 99/151 (65.56%), Query Frame = 1
Query:   19 ELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQL---LSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALL 462
            EL LC++ L+LD RNFHCW++R +V E  GL  E+++ +TT KI+QNFSNYSA+H RS L+P M    + +P QL   L +E EL  +A+FTEP DQS W YH++L+   K ++ G D   Y+++   E   + ELIE+E  CKW    LL
Sbjct:  128 ELKLCSKLLDLDLRNFHCWSYRRFVGEKSGLPLEKEYAYTTTKIEQNFSNYSAWHQRSALIPLM----NTEPQQLFEKLKEEFELVRNAVFTEPKDQSSWIYHKWLVGTMK-AIPGCD---YKEVFNAEVEAINELIEIEPDCKWPIYTLL 270          
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: A0A0P1AIP1_PLAHL (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIP1_PLAHL)

HSP 1 Score: 134 bits (337), Expect = 3.690e-34
Identity = 82/216 (37.96%), Postives = 117/216 (54.17%), Query Frame = 1
Query:   10 LREELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRLVKSIDGVTENASPTASGECWVEGERSPEAVHLLESCSGMASRLAELDPMHAKFYEFVNR 657
            L++E+ LC + L LD RNFHCW +R  V E+  +  E+   FTT KI+QNFSNYSA H RS  LP+ +        +++ DE+EL   A+FTEP DQS W+Y+++L+T   E V     E   + L+ +A  L+EL+E+E   KWA + L  +  RL     GV  N         W E +     VH L+    +  R   LDP H  +Y+ + R
Sbjct:  129 LQKEIGLCDKLLNLDERNFHCWNYRRHVCELANVPKEDQLAFTTQKIEQNFSNYSALHHRSINLPKPLTA------EVIFDEIELIQQAVFTEPDDQSAWFYYRWLVTSMVELVKS-SAENAVEFLKKQAQWLEELVEMEAEAKWAIVTLADICGRL-----GVIINVGG------WEEAK-----VHCLD----LYDRAIALDPDHRSYYDDMKR 317          
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: A0A0M0JE27_9EUKA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JE27_9EUKA)

HSP 1 Score: 132 bits (331), Expect = 3.190e-33
Identity = 72/175 (41.14%), Postives = 99/175 (56.57%), Query Frame = 1
Query:   19 ELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDP----WQLLSDELELAHDAMFTEPADQSVWWYHQFLLTW-AKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRLVKSIDGVTENASPTAS 528
            EL L A+ L LD RNFHCW +R  V  V G++AE +  FTT KI+ NFSNYSA+H+RSKLLP +   A  +       +L +ELEL  +A FT P D S W+YH++L+   A  + A   P  +E ++R E   + EL+E+E  CKW   A   + + L     G  E     A+
Sbjct:  127 ELKLTAKLLALDDRNFHCWTYRRNVVRVAGVTAEAELAFTTTKIQANFSNYSAWHYRSKLLPAVHASAGAEGAAQLGAVLRNELELVRNAFFTAPEDSSAWFYHRWLIAQLAPGAAAALPPAEFEALVRAELQMVDELLELEPECKWPLAAAAFLGRTLDTHQMGSEETTGAAAT 301          
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: A0A8K1CD87_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD87_PYTOL)

HSP 1 Score: 130 bits (326), Expect = 8.310e-33
Identity = 75/211 (35.55%), Postives = 115/211 (54.50%), Query Frame = 1
Query:   10 LREELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRLVKSIDGVTENASPTASGECWVEGERSPEAVHLLESCSGMASRLAELDPMHAKFY 642
            L++E+ALC + L+LD RNFHCW +R  V ++ G+S E++  F T KI+QNFSNYSA H RS  LP+ +        ++L DE+ +   A+FTEP DQS W+Y+++L+T +   V   +P    + L ++   L EL+E+E   KW  + L  + +RL  S+    + AS                A    E       +L  +DP HA++Y
Sbjct:  134 LKKEIALCNRLLDLDERNFHCWNYRRHVCQLAGVSREDELAFATLKIEQNFSNYSALHHRSITLPKPLTR------EILHDEIGIVQQAVFTEPDDQSAWFYYRWLVT-SMLDVVQSEPSEAVEFLDSQIQWLLELLEMESEAKWVLVTLADLQRRL--SVAQTEDEAS----------------ASQAKEQSRVYYKQLLSVDPDHAQYY 319          
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: A0A060T808_BLAAD (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T808_BLAAD)

HSP 1 Score: 130 bits (326), Expect = 8.660e-33
Identity = 77/216 (35.65%), Postives = 113/216 (52.31%), Query Frame = 1
Query:   19 ELALCAQFLELDGRNFHCWAHRMWVAEVMGLS-----AEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRLVKSIDGVTENASPTASGECWVEGERSPEAVHLLESCSGMASRLAELDPMHAKFYEFV 651
            ELA+ ++ LELD RNFH W +R +V   +  S      + +FD+TT+KI  NFSN+SA+H R+KL+PR++ E  +DP +LL  ELE    A++T+P DQS W YH++LL+   + V         KI+  E  +++EL E+E   KW   AL+   Q L K                     E  P     L+      S+L + DPM    Y++V
Sbjct:  128 ELAIVSKMLELDSRNFHGWHYRRYVVGELEKSHDNSLVKSEFDYTTSKINANFSNFSAWHQRAKLIPRLLKETGQDPRELLYSELEYIRQALYTDPDDQSSWIYHRWLLS-TDQIVPDLSANERAKIITNEIKSIEELDEIEPDNKWCMDALVFYGQLLAKV--------------------ESRPLTAEELDQARKRLSKLKQTDPMRKNRYQYV 322          
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: A0A151ZSE4_9MYCE (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZSE4_9MYCE)

HSP 1 Score: 129 bits (324), Expect = 1.220e-32
Identity = 67/150 (44.67%), Postives = 98/150 (65.33%), Query Frame = 1
Query:   19 ELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALLLV 468
            EL LC++ L+LD RNFHCW++R ++ +  G+   ++FD+TT KI+QNFSNYSA+H RS LL ++  E S +    L +ELE   +A++TEP DQS W YH++L    K  VA  +   Y+ IL++E   + EL+E+E  CKW     LL+
Sbjct:  130 ELKLCSKLLDLDLRNFHCWSYRRFILKHSGIPLTQEFDYTTKKIEQNFSNYSAWHQRSSLLTKIYTEPS-ELASKLKEELEWVRNAVYTEPKDQSSWVYHKWLTGTLKPIVATTE---YKDILKSELGPITELMELEPDCKWPLYISLLL 275          
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Match: F4PXZ6_CAVFA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PXZ6_CAVFA)

HSP 1 Score: 127 bits (320), Expect = 4.540e-32
Identity = 66/154 (42.86%), Postives = 96/154 (62.34%), Query Frame = 1
Query:   19 ELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKIKQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQSVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAELALLLVTQRL 480
            EL LC + L+LD RNFHCW++R +V E  G+  E++F +TT KI+QNFSNYSA+H RS L+P+M  +  +  ++ L +E E   +A+FTEP DQS W YH++L+   K+         Y+ +L +E   +  LIE+E  CKW    LL +   L
Sbjct:  128 ELKLCYKLLDLDLRNFHCWSYRRFVEERSGMPMEKEFGYTTEKIEQNFSNYSAWHQRSSLIPQMYPQPEQ-LFEKLKEEFEWVRNAVFTEPKDQSCWIYHKWLVGTIKKIPNCN----YKDVLLSEVDEINGLIEIEPDCKWPIYTLLTLKMEL 276          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67908.14402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK31_ECTSI1.370e-9966.09Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A835Z1Z5_9STRA4.380e-5446.48Geranylgeranyl transferase type-2 subunit alpha n=... [more]
M4C4N4_HYAAE1.160e-3537.85Geranylgeranyl transferase type-2 subunit alpha n=... [more]
UPI000644DC6F7.470e-3547.02hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A0P1AIP1_PLAHL3.690e-3437.96Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A0M0JE27_9EUKA3.190e-3341.14Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A8K1CD87_PYTOL8.310e-3335.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A060T808_BLAAD8.660e-3335.65Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A151ZSE4_9MYCE1.220e-3244.67Geranylgeranyl transferase type-2 subunit alpha n=... [more]
F4PXZ6_CAVFA4.540e-3242.86Geranylgeranyl transferase type-2 subunit alpha n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67908contigH-elongata_contig67908:43..2096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.8
Seed ortholog evalue1.4e-79
Seed eggNOG ortholog2880.D8LK31
Preferred nameRABGGTA
KEGG koko:K14050,ko:K20306
GOsGO:0003008,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005829,GO:0005886,GO:0005968,GO:0006464,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0009987,GO:0010035,GO:0010038,GO:0010941,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016740,GO:0016765,GO:0017016,GO:0017137,GO:0018342,GO:0018344,GO:0019538,GO:0019899,GO:0022607,GO:0031267,GO:0031974,GO:0031981,GO:0032501,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042221,GO:0042579,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046686,GO:0046907,GO:0046982,GO:0046983,GO:0048193,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097354,GO:0140096,GO:1901564,GO:1902494,GO:1990234,GO:1990778
EggNOG free text desc.protein geranylgeranylation
EggNOG OGsCOG5536@1,KOG0529@2759
EC2.5.1.60
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01006,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size669
Cds size669
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67908.14402.1prot_H-elongata_contig67908.14402.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67908 43..2096 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931070.8209565-CDS-H-elongata_contig67908:42..1981622931070.8209565-CDS-H-elongata_contig67908:42..198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67908 43..198 +
1691679685.76324-CDS-H-elongata_contig67908:42..1981691679685.76324-CDS-H-elongata_contig67908:42..198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67908 43..198 +
1622931070.8381212-CDS-H-elongata_contig67908:691..8081622931070.8381212-CDS-H-elongata_contig67908:691..808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67908 692..808 +
1691679685.7753608-CDS-H-elongata_contig67908:691..8081691679685.7753608-CDS-H-elongata_contig67908:691..808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67908 692..808 +
1622931070.8567321-CDS-H-elongata_contig67908:1230..13981622931070.8567321-CDS-H-elongata_contig67908:1230..1398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67908 1231..1398 +
1691679685.7836106-CDS-H-elongata_contig67908:1230..13981691679685.7836106-CDS-H-elongata_contig67908:1230..1398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67908 1231..1398 +
1622931070.8790083-CDS-H-elongata_contig67908:1868..20961622931070.8790083-CDS-H-elongata_contig67908:1868..2096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67908 1869..2096 +
1691679685.793549-CDS-H-elongata_contig67908:1868..20961691679685.793549-CDS-H-elongata_contig67908:1868..2096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67908 1869..2096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67908.14402.1

>prot_H-elongata_contig67908.14402.1 ID=prot_H-elongata_contig67908.14402.1|Name=mRNA_H-elongata_contig67908.14402.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
RLVLREELALCAQFLELDGRNFHCWAHRMWVAEVMGLSAEEDFDFTTAKI
KQNFSNYSAFHFRSKLLPRMIGEASRDPWQLLSDELELAHDAMFTEPADQ
SVWWYHQFLLTWAKESVAGRDPERYEKILRTEASTLKELIEVEGRCKWAE
LALLLVTQRLVKSIDGVTENASPTASGECWVEGERSPEAVHLLESCSGMA
SRLAELDPMHAKFYEFVNRGGSV
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mRNA from alignment at H-elongata_contig67908:43..2096+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67908.14402.1 ID=mRNA_H-elongata_contig67908.14402.1|Name=mRNA_H-elongata_contig67908.14402.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2054bp|location=Sequence derived from alignment at H-elongata_contig67908:43..2096+ (Himanthalia elongata Himel1 dioecious)
AGGCTGGTGCTGAGAGAGGAGCTAGCGCTGTGCGCGCAGTTCTTGGAGCT AGACGGTCGAAATTTCCATTGTTGGGCACATCGTATGTGGGTGGCGGAGG TGATGGGGCTCTCTGCGGAGGAGGACTTTGACTTCACAACTGCGAAAATC AAGCAGGTGGAACACTCGTCCCCCTGGGATTACCGAGTTAAATGGAGCAT GTGACATCACACGAGCGCCTCTTGCAGAAACGCGAGAGAACTCGCGAGCT GGAGCGGTTCCAGGGGAGGTGACCGGTGTCCACGCCAGTCGAAAGTCTTT GCGCCGGGCGCCGGGTACCCGGCACCTTCCCTACCAACCCGATTTGGCCA TATTTGAGATGGCAGAAGGACGTACTGTGGTCATATCGCAGGGAAGCTTC GCGCTCGAGCTGCCATCTCTAGGATACCAAAGAGTCCTCGAGACTTCATA TCATGGCTTCATTTCGCTCGTATTCCGTCTCAATTTGCGAAGAGTTGACG CATGCCTGTAAGTCACTCGGGACTCTAAACACATTGTGTCCCCCCCTCCC CCCCACCCCCTACGAGATCGCAACCTTTTACCCTCGCCTCCCTCTATTTT TCCTCTCTTTCTCTCATTTACTCTACCGTTTTTTTTCATCATCCCCCAGA ACTTCAGCAACTACAGCGCGTTTCACTTTCGAAGCAAACTCCTCCCGAGA ATGATAGGTGAAGCCAGCCGCGATCCGTGGCAGCTACTGTCCGACGAGCT CGAGCTGGCGCACGATGTAAGCAACTCAAACCTCTCAAAATCCGAATCCT AAACGTGGGAGCATTATATATTATATATATATATTATTTTTGTGAAGTGC ACTATGGCCTGGCGTCTCCATATGATGAATAATGTAAGTGTACGGGTTAA TGACAGAATCCCCGATATTAAACCCTTGACCCCATGAACTCACTATTGGG GAAGACGATTTATCCACGTTTGCGATTTTGTGCTCAAAGGTAGTAATAAT GTACACATTCGAACCTCACGATATTTGGTCCCCTGGACTGCTCCATATCG GTGCTAAGAAGGTGTGTATCGAGGGTTTCAATGAGTTCATTATATATATA TATTTTAAACGTAGGTGCTAATTTTATATAGCTTGCAATGTTTTTTTTTT TTCCGTTTTGTCTTTACGCAACCTTTGCTTGGAAAAAGGCGATGTTCACA GAACCTGCTGATCAGAGCGTGTGGTGGTACCACCAATTCCTCTTGACCTG GGCGAAGGAAAGCGTTGCCGGCCGTGACCCGGAACGTTACGAGAAAATTC TTCGAACGGAGGCGTCCACCTTGAAGGAATTGATCGAGGTCGAGGGACGG TGCAAGGTGCGCGTGCCTCTACTTATTCATACCCAGGTTAGGGTGGGATG CCCACTATTACCTAGGTGGACCGACGGATAAGACAGTTGGTAGAGTAAAT TCCATATTATTCCCTCCCCAGCACACTCACGAAGAGCGTGTCTGATGGAT GCTCTCGGCACCGCACGCGGGTTTCACTGGTACTCTTGTCGAAATCTTAA AAGATCATGGCCAACCAAGTGTGGACGATTGATGATGCGCTAGACAAGTT TTATTTTCGCGCAGTAGCTTCCCCCCAAGGGCTTCGGTATATGCTTCACT TGCCGTTGTCAACCTTCGTCCTTAAGAGACGTATCGTTTTCATATGTATA TTTAGGTAATTTATGCCTTTGCATGAGAGCATCAGTGAGTCACTCACGTC GTACAGAATATGTACTGTGTACCAAAATCCTCACACGTGGAAATTGTCGG CTGCCCTTCCTCGTACGATCGTTTAGTGGGCGGAACTCGCTCTCTTGCTA GTGACCCAACGGCTCGTGAAGTCCATCGACGGGGTAACGGAAAACGCTTC GCCAACAGCCAGCGGCGAATGCTGGGTTGAAGGAGAACGTTCGCCCGAGG CTGTGCATTTGTTGGAGAGCTGCAGTGGCATGGCGTCGCGATTGGCCGAG CTCGACCCGATGCATGCAAAATTTTACGAGTTCGTCAATCGAGGCGGCTC GGTT
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Coding sequence (CDS) from alignment at H-elongata_contig67908:43..2096+

>mRNA_H-elongata_contig67908.14402.1 ID=mRNA_H-elongata_contig67908.14402.1|Name=mRNA_H-elongata_contig67908.14402.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig67908:43..2096+ (Himanthalia elongata Himel1 dioecious)
AGGCTGGTGCTGAGAGAGGAGCTAGCGCTGTGCGCGCAGTTCTTGGAGCT
AGACGGTCGAAATTTCCATTGTTGGGCACATCGTATGTGGGTGGCGGAGG
TGATGGGGCTCTCTGCGGAGGAGGACTTTGACTTCACAACTGCGAAAATC
AAGCAGAGGCTGGTGCTGAGAGAGGAGCTAGCGCTGTGCGCGCAGTTCTT
GGAGCTAGACGGTCGAAATTTCCATTGTTGGGCACATCGTATGTGGGTGG
CGGAGGTGATGGGGCTCTCTGCGGAGGAGGACTTTGACTTCACAACTGCG
AAAATCAAGCAGAACTTCAGCAACTACAGCGCGTTTCACTTTCGAAGCAA
ACTCCTCCCGAGAATGATAGGTGAAGCCAGCCGCGATCCGTGGCAGCTAC
TGTCCGACGAGCTCGAGCTGGCGCACGATAACTTCAGCAACTACAGCGCG
TTTCACTTTCGAAGCAAACTCCTCCCGAGAATGATAGGTGAAGCCAGCCG
CGATCCGTGGCAGCTACTGTCCGACGAGCTCGAGCTGGCGCACGATGCGA
TGTTCACAGAACCTGCTGATCAGAGCGTGTGGTGGTACCACCAATTCCTC
TTGACCTGGGCGAAGGAAAGCGTTGCCGGCCGTGACCCGGAACGTTACGA
GAAAATTCTTCGAACGGAGGCGTCCACCTTGAAGGAATTGATCGAGGTCG
AGGGACGGTGCAAGGCGATGTTCACAGAACCTGCTGATCAGAGCGTGTGG
TGGTACCACCAATTCCTCTTGACCTGGGCGAAGGAAAGCGTTGCCGGCCG
TGACCCGGAACGTTACGAGAAAATTCTTCGAACGGAGGCGTCCACCTTGA
AGGAATTGATCGAGGTCGAGGGACGGTGCAAGTGGGCGGAACTCGCTCTC
TTGCTAGTGACCCAACGGCTCGTGAAGTCCATCGACGGGGTAACGGAAAA
CGCTTCGCCAACAGCCAGCGGCGAATGCTGGGTTGAAGGAGAACGTTCGC
CCGAGGCTGTGCATTTGTTGGAGAGCTGCAGTGGCATGGCGTCGCGATTG
GCCGAGCTCGACCCGATGCATGCAAAATTTTACGAGTTCGTCAATCGAGG
CGGCTCGGTTTGGGCGGAACTCGCTCTCTTGCTAGTGACCCAACGGCTCG
TGAAGTCCATCGACGGGGTAACGGAAAACGCTTCGCCAACAGCCAGCGGC
GAATGCTGGGTTGAAGGAGAACGTTCGCCCGAGGCTGTGCATTTGTTGGA
GAGCTGCAGTGGCATGGCGTCGCGATTGGCCGAGCTCGACCCGATGCATG
CAAAATTTTACGAGTTCGTCAATCGAGGCGGCTCGGTT
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