mRNA_H-elongata_contig67833.14397.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67833.14397.1
Unique NamemRNA_H-elongata_contig67833.14397.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67833.14397.1 vs. uniprot
Match: A0A1L2F1H7_9PHAE (Nad4L n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.050e-19
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   10 LSVNFNFIIFSVCLGDLIGQIFAIFILIIADCE---GLAIILVFFRVRGSIRTDQAPVLE 180
            LSV+ NFIIFSVCL DLIGQIFAIFILI+A CE   GLAIILV+FRVRGSIR DQA +L+
Sbjct:   41 LSVSLNFIIFSVCLADLIGQIFAIFILIVAACESSIGLAIILVYFRVRGSIRIDQASLLK 100
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BLAST of mRNA_H-elongata_contig67833.14397.1 vs. uniprot
Match: E6ZER2_ECTSI (NADH-ubiquinone oxidoreductase, subunit 4L n=85 Tax=Phaeophyceae TaxID=2870 RepID=E6ZER2_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.710e-19
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:   10 LSVNFNFIIFSVCLGDLIGQIFAIFILIIADCE---GLAIILVFFRVRGSIRTDQAPVLE 180
            LSV+ NFIIFS CLGDL GQIFAIFIL+IA CE   GLAIILV+FRVRGSIR DQA +L+
Sbjct:   40 LSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSVGLAIILVYFRVRGSIRIDQASLLK 99
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BLAST of mRNA_H-elongata_contig67833.14397.1 vs. uniprot
Match: Q94Z11_PYLLI (NADH dehydrogenase subunit 4L n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z11_PYLLI)

HSP 1 Score: 82.0 bits (201), Expect = 5.710e-19
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:   10 LSVNFNFIIFSVCLGDLIGQIFAIFILIIADCE---GLAIILVFFRVRGSIRTDQAPVLE 180
            LSV+ NFIIFSVCL DL GQIFAIFIL+IA CE   GLAIILVFFRVRGSIR DQA +L+
Sbjct:   40 LSVSLNFIIFSVCLDDLTGQIFAIFILVIAACESSIGLAIILVFFRVRGSIRLDQASLLK 99
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BLAST of mRNA_H-elongata_contig67833.14397.1 vs. uniprot
Match: A0A8E8PEE6_9PHAE (Nad4L n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PEE6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.550e-16
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:   10 LSVNFNFIIFSVCLGDLIGQIFAIFILIIADCE---GLAIILVFFRVRGSIRTDQAPVLE 180
            L V+  F+IFSVCLGDL GQIFAI+IL+IA CE   GLAIILV+FRV+GSIR DQA +L+
Sbjct:   40 LGVSLGFLIFSVCLGDLQGQIFAIYILVIAACESSIGLAIILVYFRVKGSIRLDQASLLK 99
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BLAST of mRNA_H-elongata_contig67833.14397.1 vs. uniprot
Match: A0A4Y5T8D2_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8D2_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.120e-15
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:   13 SVNFNFIIFSVCLGDLIGQIFAIFILIIADCE---GLAIILVFFRVRGSIRTDQAPVLE 180
            S++ NF+IFSV L D+IGQIFA+FIL +A CE   GLAIILV++RVRGSIR DQA +L+
Sbjct:   41 SISLNFLIFSVYLDDIIGQIFALFILTVAACESSIGLAIILVYYRVRGSIRVDQASLLK 99
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BLAST of mRNA_H-elongata_contig67833.14397.1 vs. uniprot
Match: Q2TUC4_DICDH (NADH dehydrogenase subunit 4L n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUC4_DICDH)

HSP 1 Score: 72.0 bits (175), Expect = 5.120e-15
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:   13 SVNFNFIIFSVCLGDLIGQIFAIFILIIADCE---GLAIILVFFRVRGSIRTDQAPVLE 180
            S++ NF+IFSV L D+IGQIFA+FIL IA CE   GLAIILV++RVRGSIR DQA +L+
Sbjct:   41 SISLNFLIFSVYLDDMIGQIFALFILTIAACESSIGLAIILVYYRVRGSIRIDQASLLK 99
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BLAST of mRNA_H-elongata_contig67833.14397.1 vs. uniprot
Match: A0A8F0FEY2_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FEY2_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 7.260e-15
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:   13 SVNFNFIIFSVCLGDLIGQIFAIFILIIADCE---GLAIILVFFRVRGSIRTDQAPVLE 180
            SV+ NF+IFSV L D++GQIFA+FIL +A CE   GLAIILV++RVRGSIR DQA +L+
Sbjct:   41 SVSLNFLIFSVYLDDIMGQIFAVFILAVAACESSVGLAIILVYYRVRGSIRVDQAALLK 99
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BLAST of mRNA_H-elongata_contig67833.14397.1 vs. uniprot
Match: NUOK_BRUA1 (NADH-quinone oxidoreductase subunit K n=38 Tax=Brucella TaxID=234 RepID=NUOK_BRUA1)

HSP 1 Score: 61.2 bits (147), Expect = 9.500e-11
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    4 VVLSVNFNFIIFSVCLGDLIGQIFAIFILIIADCE---GLAIILVFFRVRGSIRTDQAPVLE 180
            ++LSVN NF+ FS  LGDL+GQ+FA+F+L +A  E   GLAI++VFFR RGSI  +   V++
Sbjct:   40 ILLSVNLNFVAFSSQLGDLVGQVFALFVLTVAAAEAAIGLAILVVFFRNRGSIAVEDVNVMK 101
[Close]
BLAST of mRNA_H-elongata_contig67833.14397.1 vs. uniprot
Match: A0A316C2W8_PSESE (NADH-quinone oxidoreductase subunit K n=7 Tax=Hyphomicrobiales TaxID=356 RepID=A0A316C2W8_PSESE)

HSP 1 Score: 61.2 bits (147), Expect = 9.500e-11
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    4 VVLSVNFNFIIFSVCLGDLIGQIFAIFILIIADCE---GLAIILVFFRVRGSIRTDQAPVLE 180
            ++LSVN NF+ FS  LGD+IGQ+FA+F+L +A  E   GLAI++VFFR RGSI  +   +++
Sbjct:   40 ILLSVNLNFVAFSATLGDMIGQVFALFVLTVAAAEAAIGLAILVVFFRNRGSIAVEDVNMMK 101
[Close]
BLAST of mRNA_H-elongata_contig67833.14397.1 vs. uniprot
Match: A0A4Y5T7L0_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A4Y5T7L0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-10
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   10 LSVNFNFIIFSVCLGDLIGQIFAIFILIIADCE---GLAIILVFFRVRGSIRTDQAPVLE 180
            LS++ NF++FSV L D+IGQ+F I ++ +A CE   GLA+ILV++RVRGSI  D+A +L 
Sbjct:   45 LSISLNFLLFSVFLDDIIGQLFGILVISVAACESSVGLALILVYYRVRGSILLDKASLLR 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67833.14397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1L2F1H7_9PHAE2.050e-1978.33Nad4L n=1 Tax=Coccophora langsdorfii TaxID=74099 R... [more]
E6ZER2_ECTSI5.710e-1976.67NADH-ubiquinone oxidoreductase, subunit 4L n=85 Ta... [more]
Q94Z11_PYLLI5.710e-1978.33NADH dehydrogenase subunit 4L n=1 Tax=Pylaiella li... [more]
A0A8E8PEE6_9PHAE1.550e-1670.00Nad4L n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID... [more]
A0A4Y5T8D2_9PHAE5.120e-1566.10NADH dehydrogenase subunit 4L n=1 Tax=Dictyopteris... [more]
Q2TUC4_DICDH5.120e-1567.80NADH dehydrogenase subunit 4L n=1 Tax=Dictyota dic... [more]
A0A8F0FEY2_9PHAE7.260e-1566.10NADH dehydrogenase subunit 4L n=1 Tax=Protohalopte... [more]
NUOK_BRUA19.500e-1153.23NADH-quinone oxidoreductase subunit K n=38 Tax=Bru... [more]
A0A316C2W8_PSESE9.500e-1151.61NADH-quinone oxidoreductase subunit K n=7 Tax=Hyph... [more]
A0A4Y5T7L0_9PHAE1.020e-1053.33NADH dehydrogenase subunit 4L n=1 Tax=Ishige okamu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67833contigH-elongata_contig67833:1932..2111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog1094558.ME5_01268
Preferred namenuoK
KEGG rclassRC00061
KEGG koko:K00340
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030964,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072521,GO:0098796,GO:0098797,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
EggNOG OGs1RH0S@1224,2U93P@28211,48U6I@772,COG0713@1,COG0713@2
EC1.6.5.3
COG Functional cat.C
Best tax levelBartonellaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal peptide
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931070.3090587-CDS-H-elongata_contig67833:1931..21111622931070.3090587-CDS-H-elongata_contig67833:1931..2111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67833 1932..2111 +
1691679685.5775487-CDS-H-elongata_contig67833:1931..21111691679685.5775487-CDS-H-elongata_contig67833:1931..2111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67833 1932..2111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67833.14397.1prot_H-elongata_contig67833.14397.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67833 1932..2111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67833.14397.1

>prot_H-elongata_contig67833.14397.1 ID=prot_H-elongata_contig67833.14397.1|Name=mRNA_H-elongata_contig67833.14397.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
IVVLSVNFNFIIFSVCLGDLIGQIFAIFILIIADCEGLAIILVFFRVRGS
IRTDQAPVLE
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mRNA from alignment at H-elongata_contig67833:1932..2111+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67833.14397.1 ID=mRNA_H-elongata_contig67833.14397.1|Name=mRNA_H-elongata_contig67833.14397.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig67833:1932..2111+ (Himanthalia elongata Himel1 dioecious)
ATTGTTGTTCTTTCAGTTAACTTCAATTTTATTATATTTTCTGTCTGTCT
AGGGGATCTCATAGGTCAGATATTTGCTATTTTTATTCTTATAATTGCTG
ATTGTGAAGGTTTAGCTATAATTTTAGTCTTTTTCCGAGTTCGTGGTAGT
ATTCGTACTGATCAAGCCCCAGTACTAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig67833:1932..2111+

>mRNA_H-elongata_contig67833.14397.1 ID=mRNA_H-elongata_contig67833.14397.1|Name=mRNA_H-elongata_contig67833.14397.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig67833:1932..2111+ (Himanthalia elongata Himel1 dioecious)
ATTGTTGTTCTTTCAGTTAACTTCAATTTTATTATATTTTCTGTCTGTCT
AGGGGATCTCATAGGTCAGATATTTGCTATTTTTATTCTTATAATTGCTG
ATTGTGAAGGTTTAGCTATAATTTTAGTCTTTTTCCGAGTTCGTGGTAGT
ATTCGTACTGATCAAGCCCCAGTACTAGAGATTGTTGTTCTTTCAGTTAA
CTTCAATTTTATTATATTTTCTGTCTGTCTAGGGGATCTCATAGGTCAGA
TATTTGCTATTTTTATTCTTATAATTGCTGATTGTGAAGGTTTAGCTATA
ATTTTAGTCTTTTTCCGAGTTCGTGGTAGTATTCGTACTGATCAAGCCCC
AGTACTAGAG
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