mRNA_H-elongata_contig67652.14373.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67652.14373.1
Unique NamemRNA_H-elongata_contig67652.14373.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67652.14373.1 vs. uniprot
Match: D7G170_ECTSI (Serine/threonine-protein kinase CTR1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G170_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 7.200e-102
Identity = 159/216 (73.61%), Postives = 176/216 (81.48%), Query Frame = 1
Query:    1 DWARAEDSEWKANHQLEWGDLTDVREIGKGLTCTVYTAKVPGRRAKVIAKVARQRNKGRLEDQAERQLEAEFNV----QHPNVVELLGAGFTGEGRRFILLEHLPGGTLGTFRALSSREEMRGPSPYTILKKGLRLLSRDFKLTLTKVLQVAEALNYLQKGAIPGAVVLHRDVRPDNIGMARGGVVKMFDFGLSKALGKSSNGLIIPMIGEAGSLR 636
            DWA  ED +WKANHQL W  LTDVREIGKGLTCTV+TA +PGR+AKVIAKVAR RNKGRLEDQAERQLEAEFNV     HP+VVELLGAGFT EGRRF+LLEHLP GTLGTF ALS RE+MRGPS Y  LK+G R L++D   TL +VLQVAEAL YL   AIPGAVVLHRD+RPDNIG+ARG  VKMFDFGLSKA+ K  +     ++GEAGSLR
Sbjct:    7 DWAGVEDPDWKANHQLSWEQLTDVREIGKGLTCTVFTASIPGRKAKVIAKVARPRNKGRLEDQAERQLEAEFNVLRQVNHPHVVELLGAGFTHEGRRFLLLEHLPEGTLGTFHALSDREQMRGPSAYRTLKQGFRRLTKDLNYTLGRVLQVAEALQYLHNDAIPGAVVLHRDIRPDNIGLARGDAVKMFDFGLSKAIAKGHS-----LVGEAGSLR 217          
BLAST of mRNA_H-elongata_contig67652.14373.1 vs. uniprot
Match: A0A6H5JM84_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM84_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.330e-25
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 1
Query:  376 LKKGLRLLSRDFKLTLTKVLQVAEALNYLQKGAIPGAVVLHRDVRPDNIGMARGGVVKMFDFGLSKALGKSSNGLIIPMIGEAGSLR 636
            LK+G R L++D   TL +VLQVAEAL YL   AIPGAVVLHRDVRPDNIG+  G VVKMFDFGLSKA+ K  +     ++GEAGSLR
Sbjct:   91 LKQGFRRLTKDLNYTLGRVLQVAEALQYLHNDAIPGAVVLHRDVRPDNIGLGHGDVVKMFDFGLSKAIAKGHS-----LVGEAGSLR 172          
BLAST of mRNA_H-elongata_contig67652.14373.1 vs. uniprot
Match: A0A7S2LC32_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LC32_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.670e-22
Identity = 67/203 (33.00%), Postives = 103/203 (50.74%), Query Frame = 1
Query:   34 ANHQLEWGDLTDVREIGKGLTCTVYTAKVPGRRAKVIAKVARQRNKGRLEDQAERQLEAEFNVQHPNVVELLGAGFTGEGRRFILLEHLPGGTLGTFRALSSREEMRGPSPYTILKKGLRLLSRDFKLTLTKVLQVAEALNYLQKGAIPGAVVLHRDVRPDNIGMARGGVVKMFDFGLSKALGKSSNGL--IIPMIGEAGSLR 636
            AN  ++W  L ++  +  G    ++TA V G+   V       ++     ++ E +L+    + H N+V L+GAG T +G RF++LE L GGTL       +R  +R        +K L  L       L     +A+AL Y    A+PG +VLHRDV+PDNIG    G +K+ DFGL+K +  ++     +  + GE GSLR
Sbjct:   42 ANLNMKWNSLQNIEYLTDGGNSWIHTAVVNGKSVVVKTLKPECQDMAMAINEIEAELDVHARLSHENIVALVGAGLTSKGVRFVVLERLDGGTLTQVLGYDTR--IRDRRRRFFKRKQLSYLE-----VLNHARSLADALGYCHGKAVPGTLVLHRDVKPDNIGFTIDGTLKLIDFGLAKVVDNATPDCNDVYSLSGETGSLR 237          
BLAST of mRNA_H-elongata_contig67652.14373.1 vs. uniprot
Match: K0R303_THAOC (Protein kinase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R303_THAOC)

HSP 1 Score: 103 bits (258), Expect = 4.080e-22
Identity = 71/206 (34.47%), Postives = 107/206 (51.94%), Query Frame = 1
Query:   34 ANHQLEWGDLTDVREIGKGLTCTVYTAKVPGRRAKVIAKVARQRNKGRLEDQAERQLEAEFNVQHPNVVELLGAGFTGEGRRFILLEHLPGGTLGTFRALSSREEMRGPSPYTILKKGLRLLSRDFKLTLTKVLQ----VAEALNYLQKGAIPGAVVLHRDVRPDNIGMARGGVVKMFDFGLSKALGKSS-NGLIIPMIGEAGSLR 636
            A   L+W  L +V  +  G    ++TA   G+   V       ++      + E +LE    + HPN+ +L+GAGFT  G RFI+LE L GGT+       +R           ++   R      KL+  +VLQ    +AE+L Y    AIP A+V+HRD++PDNIG A  G +++FDFGL++ +  +S +  +  M GE GSLR
Sbjct:  438 AQLNLQWDSLRNVEYLTDGGNAWIHTAVFQGKSVVVKTIKPECQDVALAIKEIESELEIHSRLDHPNICKLVGAGFTPRGIRFIVLERLDGGTMSQLLGYDNR-----------IRDRRRRFWNKKKLSYMEVLQCSRDLAESLAYCHGRAIPNAMVMHRDLKPDNIGFALDGKLQLFDFGLARIVENASISNDVYNMSGETGSLR 632          
BLAST of mRNA_H-elongata_contig67652.14373.1 vs. uniprot
Match: A0A7S3V705_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V705_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.470e-22
Identity = 74/213 (34.74%), Postives = 113/213 (53.05%), Query Frame = 1
Query:   34 ANHQLEWGDLTDVREIGKGLTCTVYTAKVPGRRAKVIAKVARQRNKGRLEDQA--ERQLEAEFNVQ----HPNVVELLGAGFTGEGRRFILLEHLPGGTLGTFRALSSREEMRGPSPYTILKKGLRLLSRDFKLTLTKVL----QVAEALNYLQKGAIPGAVVLHRDVRPDNIGMARGGVVKMFDFGLSKALGKSS--NGLIIPMIGEAGSLR 636
            AN  L W DL ++  +  G    ++TA V  +   VI ++     K  ++D A    ++E E  +     H N+V L GAGFT    RFI++E L GGTL       +R           ++   R   +  KL+  KVL    Q+AEA++Y  + A+ G++VLHRD++PDNIG+   G+VK+ DFGL++ +  +S  +  +  M GE GSLR
Sbjct:  388 ANLNLTWSDLRNIEYLTDGGNNWIHTA-VMNKTPIVIKQL-----KPEVQDVAIAMNEIEGELAIHRLLNHKNIVSLFGAGFTSNKSRFIVMERLDGGTLTQVLGYDTR-----------IRDRRRRFWKKNKLSYIKVLDCAKQIAEAIDYCHRSAVEGSMVLHRDLKPDNIGLTLSGIVKIIDFGLARVVDNTSPNSNEVFEMSGETGSLR 583          
BLAST of mRNA_H-elongata_contig67652.14373.1 vs. uniprot
Match: A0A6H5LAW2_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAW2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 6.490e-22
Identity = 75/227 (33.04%), Postives = 118/227 (51.98%), Query Frame = 1
Query:   46 LEWGDLTDVREIGKGLTCTVYTAKVPGRRAKVIAKVARQRNKGRLEDQAERQLEAEFNV----QHPNVVELLGAGFTG------------------------EGRRFILLEHLPGGTLGTFRALSSREEMRGPSPYTILKKGLRLLSRDFKLTLTKVLQVAEALNYLQKGAIPGAVVLHRDVRPDNIGMARGGVVKMFDFGLSKALGKSSNGLI--IPMIGEAGSLR 636
            L++ +L DV+ +  G  C++YTA+  GRR  V+ K+ R  +     + A + LE E ++    QHPN+VE+LGAGF                          E +RF+LLE+L GGTL    ++ +R         +++++  +      K  +   LQ+A AL+YL   AI G+ V+HRD++P+NI  +  G +K+FDFGL+K + +    L     M GE GS R
Sbjct:   40 LDFEELRDVQYLTNGGMCSIYTAEWRGRR--VVVKMPR--DDCAQPEVARKDLETEIDILQRLQHPNIVEMLGAGFVNPLDVGPDGGGGERGEFRDLDQANAESKRFVLLEYLVGGTLT--ESMLTRNPPADGMMSSVVRRWQQNWQFPTKKAIDSALQLASALSYLHGRAIEGSFVVHRDLKPENIAFSGDGRLKLFDFGLAKIVRRRGGRLSQRYEMTGETGSTR 260          
BLAST of mRNA_H-elongata_contig67652.14373.1 vs. uniprot
Match: A0A7S2LY51_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LY51_9STRA)

HSP 1 Score: 103 bits (256), Expect = 7.650e-22
Identity = 70/206 (33.98%), Postives = 107/206 (51.94%), Query Frame = 1
Query:   34 ANHQLEWGDLTDVREIGKGLTCTVYTAKVPGRRAKVIAKVARQRNKGRLEDQAERQLEAEFNVQHPNVVELLGAGFTGEGRRFILLEHLPGGTLGTFRALSSREEMRGPSPYTILKKGLRLLSRDFKLTLTKVLQ----VAEALNYLQKGAIPGAVVLHRDVRPDNIGMARGGVVKMFDFGLSKALGKSS-NGLIIPMIGEAGSLR 636
            A   L+W  L +V  +  G    ++TA + G+   V       ++     ++ E +LE    + HPN+V+L+GAGFT  G RF++LE L GGTL       +R           ++   R      K++   VL+    +AEAL Y    AIP A+VLHRD++PDN+G    G VK+ DFGL++ +  ++ +  +  M GE GSLR
Sbjct:  480 AQLNLQWESLRNVEYLTDGGNNWIHTAVLQGKSVVVKTLKPECQDVALAINEIEGELEIHSRLDHPNIVKLIGAGFTPRGVRFVVLERLDGGTLTQLLGYDTR-----------IRDRRRRFWAKKKISYMDVLKCARSLAEALAYCHGRAIPNAMVLHRDLKPDNVGFTLDGTVKLIDFGLARTVENATISNDVYEMSGETGSLR 674          
BLAST of mRNA_H-elongata_contig67652.14373.1 vs. uniprot
Match: A0A7S3DX07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DX07_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.280e-21
Identity = 69/199 (34.67%), Postives = 101/199 (50.75%), Query Frame = 1
Query:   46 LEWGDLTDVREIGKGLTCTVYTAKVPGRRAKVIAKVARQRNKGRLEDQAERQLEAEFNVQHPNVVELLGAGFTGEGRRFILLEHLPGGTLGTFRALSSREEMRGPSPYTILKKGLRLLSRDFKLTLTKVLQVAEALNYLQKGAIPGAVVLHRDVRPDNIGMARGGVVKMFDFGLSKALGKSSNGL--IIPMIGEAGSLR 636
            L+W  L +V  +  G    ++TA   GR   V       ++     ++ E +LE    + HPN+V L+GAG T +  RFI+LE L GGTL       +R   R        ++  +     F   L     +AEA+ YL + AI G++VLHRD++PDNIG    G +K+ DFGL+K +  +S     +  M GE GSLR
Sbjct:  410 LQWRQLQNVEYLTDGGNSWIHTAVFQGRPVVVKTLKPECQDVALAINEIEAELEVHSKLNHPNIVGLIGAGTTSKKVRFIILERLDGGTLTQMLGYDTRIRDRR-------RRFWKRKQFSFVDVLRIARSIAEAMTYLHESAIMGSIVLHRDLKPDNIGFTLDGTIKVLDFGLAKIIENASVTAKDVYQMSGETGSLR 601          
BLAST of mRNA_H-elongata_contig67652.14373.1 vs. uniprot
Match: A0A7S2E226_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E226_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.430e-21
Identity = 70/207 (33.82%), Postives = 109/207 (52.66%), Query Frame = 1
Query:   34 ANHQLEWGDLTDVREIGKGLTCTVYTAKVPGRRAKVIAKVARQRNKGRLEDQAERQLEAEFNVQHPNVVELLGAGFTGEGRRFILLEHLPGGTLGTFRALSSREEMRGPSPYTILKKGLRLLSRDFKLTLTKVLQ----VAEALNYLQKGAIPGAVVLHRDVRPDNIGMARGGVVKMFDFGLSKALGKS--SNGLIIPMIGEAGSLR 636
            A+  L+WG L +V  +  G    ++TA + GR   V       ++     ++ E +L+    + HP +  L+GAG T +G RFI+LE L GGTL       +R           ++   R   R  +    +VL+    +A+AL+Y  + AIPGA+ LHRD++PDNIG A  G VK+ DFGL++ +  S  ++  +  M G+ GSLR
Sbjct:  386 ASLNLKWGQLNNVEYLTDGGNNWIHTAVLNGRAVVVKTLKPECQDVALAINEIELELDIHSKLDHPFICGLVGAGTTSKGVRFIVLERLDGGTLSQMLGYDNR-----------IRDRRRRFWRKKQFAYVEVLKFARCIADALDYCHRLAIPGAMCLHRDLKPDNIGFAIDGTVKILDFGLARIVKYSDLNSNEVYQMSGQTGSLR 581          
BLAST of mRNA_H-elongata_contig67652.14373.1 vs. uniprot
Match: A0A4D9DAK6_9STRA (Protein kinase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAK6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 8.460e-21
Identity = 70/204 (34.31%), Postives = 110/204 (53.92%), Query Frame = 1
Query:   37 NHQLEWGDLTDVREIGKGLTCTVYTAKVPGRRAKVIAKVARQ---RNKGRLEDQAERQLEAEFNVQHPNVVELLGAGFTGEGRRFILLEHLPGGTLGTFRALSSREEMRGPSPYTILKKGLRLLSRDFKLTLTKVLQVAEALNYLQKGAIPGAVVLHRDVRPDNIGMARGGVVKMFDFGLSKALGKSSNGLI-IPMIGEAGSLR 636
            N  ++W DL  V  +  G T  VYTA     R  VI K+ ++   RN+ RL +    ++E   ++ HPN+V+ + +G+  E R F+++E L GG+L   + L       G        + +R  +  ++  L   LQ+AEAL Y+   A+PG  V+HRD++PDN+G    G +K+ DFGL+KA+ K       + M GE GS+R
Sbjct:  186 NMFVQWTDLHHVERLVDGGTSVVYTATY--NRLPVIVKILKEDCERNELRLRE-IRGEIELMQSLNHPNIVQYIASGW--EPRTFVVMERLEGGSLN--QRLGFAPTHSGVHRNNFFTRDVRK-AFSYESLLKYALQMAEALKYMHDEALPGYAVMHRDLKPDNVGFKADGTLKILDFGLAKAIPKDETARQKVRMTGETGSIR 381          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67652.14373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G170_ECTSI7.200e-10273.61Serine/threonine-protein kinase CTR1 n=1 Tax=Ectoc... [more]
A0A6H5JM84_9PHAE4.330e-2565.52Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S2LC32_9STRA2.670e-2233.00Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
K0R303_THAOC4.080e-2234.47Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A7S3V705_9STRA5.470e-2234.74Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6H5LAW2_9PHAE6.490e-2233.04Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A7S2LY51_9STRA7.650e-2233.98Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3DX07_9STRA1.280e-2134.67Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S2E226_9STRA3.430e-2133.82Hypothetical protein n=2 Tax=Helicotheca tamesis T... [more]
A0A4D9DAK6_9STRA8.460e-2134.31Protein kinase domain-containing protein n=2 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67652contigH-elongata_contig67652:330..3143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.4
Seed ortholog evalue5.3e-81
Seed eggNOG ortholog2880.D7G170
KEGG koko:K14304
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000323,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006928,GO:0006935,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007528,GO:0008088,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009987,GO:0009991,GO:0010008,GO:0010506,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016197,GO:0016241,GO:0016301,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017137,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031345,GO:0031410,GO:0031594,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032418,GO:0032501,GO:0032502,GO:0032879,GO:0032886,GO:0032989,GO:0032990,GO:0033036,GO:0033043,GO:0033267,GO:0033554,GO:0034613,GO:0034976,GO:0035556,GO:0036211,GO:0036465,GO:0036477,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042594,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048489,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048814,GO:0048846,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051020,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051493,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051683,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060341,GO:0060548,GO:0060560,GO:0060627,GO:0061174,GO:0061564,GO:0061845,GO:0061919,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071212,GO:0071496,GO:0071704,GO:0071840,GO:0090128,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098791,GO:0098793,GO:0098805,GO:0098852,GO:0099003,GO:0099111,GO:0099174,GO:0099504,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1900242,GO:1901214,GO:1901215,GO:1901564,GO:1902115,GO:1902284,GO:1903421,GO:1990033,GO:1990138,GO:2000026,GO:2000171,GO:2000331,GO:2000785
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine/threonine-protein kinase CTR1
Ec32 orthologEc-02_001250.1
Exons6
Model size636
Cds size636
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67652.14373.1prot_H-elongata_contig67652.14373.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67652 330..3143 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931067.566834-CDS-H-elongata_contig67652:329..4161622931067.566834-CDS-H-elongata_contig67652:329..416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67652 330..416 +
1691679684.4478965-CDS-H-elongata_contig67652:329..4161691679684.4478965-CDS-H-elongata_contig67652:329..416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67652 330..416 +
1622931067.581619-CDS-H-elongata_contig67652:789..9211622931067.581619-CDS-H-elongata_contig67652:789..921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67652 790..921 +
1691679684.4615924-CDS-H-elongata_contig67652:789..9211691679684.4615924-CDS-H-elongata_contig67652:789..921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67652 790..921 +
1622931067.598186-CDS-H-elongata_contig67652:1287..14391622931067.598186-CDS-H-elongata_contig67652:1287..1439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67652 1288..1439 +
1691679684.4714212-CDS-H-elongata_contig67652:1287..14391691679684.4714212-CDS-H-elongata_contig67652:1287..1439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67652 1288..1439 +
1622931067.6214197-CDS-H-elongata_contig67652:1869..19791622931067.6214197-CDS-H-elongata_contig67652:1869..1979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67652 1870..1979 +
1691679684.4812777-CDS-H-elongata_contig67652:1869..19791691679684.4812777-CDS-H-elongata_contig67652:1869..1979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67652 1870..1979 +
1622931067.6385272-CDS-H-elongata_contig67652:2306..23741622931067.6385272-CDS-H-elongata_contig67652:2306..2374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67652 2307..2374 +
1691679684.4909875-CDS-H-elongata_contig67652:2306..23741691679684.4909875-CDS-H-elongata_contig67652:2306..2374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67652 2307..2374 +
1622931067.655025-CDS-H-elongata_contig67652:3056..31431622931067.655025-CDS-H-elongata_contig67652:3056..3143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67652 3057..3143 +
1691679684.501831-CDS-H-elongata_contig67652:3056..31431691679684.501831-CDS-H-elongata_contig67652:3056..3143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67652 3057..3143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67652.14373.1

>prot_H-elongata_contig67652.14373.1 ID=prot_H-elongata_contig67652.14373.1|Name=mRNA_H-elongata_contig67652.14373.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
DWARAEDSEWKANHQLEWGDLTDVREIGKGLTCTVYTAKVPGRRAKVIAK
VARQRNKGRLEDQAERQLEAEFNVQHPNVVELLGAGFTGEGRRFILLEHL
PGGTLGTFRALSSREEMRGPSPYTILKKGLRLLSRDFKLTLTKVLQVAEA
LNYLQKGAIPGAVVLHRDVRPDNIGMARGGVVKMFDFGLSKALGKSSNGL
IIPMIGEAGSLR
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mRNA from alignment at H-elongata_contig67652:330..3143+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67652.14373.1 ID=mRNA_H-elongata_contig67652.14373.1|Name=mRNA_H-elongata_contig67652.14373.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2814bp|location=Sequence derived from alignment at H-elongata_contig67652:330..3143+ (Himanthalia elongata Himel1 dioecious)
GACTGGGCCAGGGCCGAGGACTCTGAGTGGAAGGCGAACCATCAATTGGA GTGGGGGGATCTCACCGACGTGAGGGAGATTGGCAAGGTGAACAGAGGGG AAGAGAGGCAGCGCTCCTCACCCCCTCCCTCTTTCTCTCTATTATGCTAT GTCGTGTGGCGGGCCGCGGTAGTGAAGAGCTTAAGGTCACCAGCAGAGAT CTAACCTTCCTTGCTATCGACGAAAAGGATTATCGCATCACCCCCCCCCC ACCCTAGTCCGTCTACAGTATCTGTCCTGACAGCTGTAATCCTTAATCCG TCACATCGCCAAGCGCACGTAGGAGTGGTTTAAACGAACAAAAACTGGCC AGTTTTCACATCGTTCTCTCTTCTCTCCCTAAAAACGCCTCCGTATATCC TTAATCGTCCGTACGAAGTAACTGCATCAAATAATTTGACTCTGGTCGTG ACTCGCGTAGGGACTGACGTGCACAGTGTATACGGCGAAGGTCCCCGGTC GACGAGCCAAAGTGATCGCCAAGGTGGCGCGACAGAGGAACAAGGGGCGC CTCGAGGACCAGGCGGAGAGACAGCTGGAGGCGGAGTTCAATGTTCTCAG GCAGGCGAGTTGGAATATATATATATATATATATAATATATATATATTCT TATTAGGGTATGCTGTACGTGTAAGCTATCACCCTGGCTTTTGCCGTGAG ACTCCGCCGTCTGTCGACCCTATTTACGGGGGGTGGGGTGCTCGTGACAC GATGAGACACGATGAGGCCTCTTGAGCTGGTACAGTCAGCAATGATATCC GCGTGGGGTACGATACATGGAGACGCAAGCGCACCAAGCACACCTCGTTC ATATCAATCATATATTTTATCTCTCCCTTGAACCAGCTGCTGCGAATGAT GACGCCGTAACGTCATAGCATCGTAACGCCGTAACGCCGTAACGCCGTGC TCGTGAAGGTGCAACACCCGAACGTGGTAGAGCTACTGGGTGCCGGTTTC ACGGGCGAGGGAAGGCGTTTCATTTTGTTGGAGCACCTCCCGGGGGGCAC GCTCGGGACGTTTCGCGCCCTAAGCTCGAGGGAAGAGATGCGCGGCCCTT CGCCGTACACGTGAGCGTTTGTATTACGTTACTTTCAAATAGGTTAGACA GTGTAATGTACAATGTAATGTTGGATATTGCATATTGTATTGGATATTGT ATTGGATATTGTATTGGATATTGTATTGGATATTGTATTGGATATTGTAT TGGATATTATATTGGATATTGTATTGGATATTATATTGGATACCGTATTG GACATAGTATTATTAGACAGTGTATTGGATCCGCCGACCCGAAGCAAAAA ACACCCCATCTCTTAAATATATTCGTAGGCGGTCGATTTTTTAAGGGGAT AGAGGTGTTTTTAGTTGGTTTATTTCATCATTTGCGTCCACGTACCGTGG AAAATCGATGCCCTTCTTTTTTTTTGCTCCCCCGTCCCTACCCCCCAACA TTTCAAATCGGTTCTACCGACAACACAATACTTTGGTCAGAATACTTAAA AAGGGGCTCCGGCTGCTATCGCGAGACTTCAAACTCACGCTGACGAAGGT TTTGCAAGTGGCGGAGGCGTTGAACTATCTGCAGAAGGGTGCCATCCCAG GTGCGGCCATCGCCGAACGGTGTAAGGTACTATGAATGTGCCCCCATAGT TTGACCGCGATCTCTAGCTCAAGCAGTGCTTGGAAGGGATTTGAAGAGCG TATACATATCATTCGGTGGTCAATGGAAAGGGATATAATGGAATGAAATG GGGTGAATTAAATGTGGCATGTTTCATGGATGATGATGGAATGCGGTTAA TACAATGTGGTATGTCATTGTGAATATTTCTCCCCCCCCCTCCCTCAAAC CGACACCCACGTGATACGTGATACGCCCCTTTCTTTCCCCTCTGGGTGAC CGAACAACCTAACGGAATCGTCCCAAGGCGCCGTGGTGCTCCACAGAGAT GTTCGTCCAGACAATATCGGGATGGCTCGCGGGGGTGTCGTAAAGGTAAC GCGGACTGTTTGTTGTACTGATCGTAAGTTCCTGACCATCCCCCCCCTCC CCTTTTTTTTGAACCCCTCCGCGGGATTTGGTAATGTCGATCTTATCGCG ATCTTGGCAAGGCAGTGTCCCCACTGTATGAGTCGGGTGCTGACGCGCCC AATGTGGGAGGGTGGTCCGGAAGGAAGCACGTTACACATCTCGCACATCT CATACACCTCAACTGCTGCTGTTTTTGAACCCGTCCGCAAAAAGCAATAG GTGTGAAACATCACGTGTGGTATTGTAAGACGGAGTCAGCCTTGATGCAC ATATTGTCAGTACATTTTGGTACTGTAAATGATACGTGCTGAACAATACG CACCGGTGCATTAGGGCGGAGAAAACCGTTACCTGTGTGTATGTATGTCG ATAATACGTGCAAATACAGCAATACGTGTTAAAACAATACGTAGTGGCGT ATTGGGACGAGGTCAGAAATCAGACACATACCTGAATGACTCCGTTCCTT TTTCTTTATTCAAGAGCTAAGGTATACGGTACAAAACTTGCTTATACCCC CCCCTAGATAACGCCTCACCTTGCGTCTTCCGCCGGGCATCGTCGATCTT TCGAACGTCGCCGAATGCTGGATGATTGGGCTTGTAATGGGACGTGTGTG CGGATCCGATAATCGCCGGTCGTGAAGATGTTCGACTTTGGTCTGTCCAA GGCTCTTGGTAAGAGCAGTAACGGTTTGATCATTCCCATGATTGGAGAGG CGGGGAGCCTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig67652:330..3143+

>mRNA_H-elongata_contig67652.14373.1 ID=mRNA_H-elongata_contig67652.14373.1|Name=mRNA_H-elongata_contig67652.14373.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig67652:330..3143+ (Himanthalia elongata Himel1 dioecious)
GACTGGGCCAGGGCCGAGGACTCTGAGTGGAAGGCGAACCATCAATTGGA
GTGGGGGGATCTCACCGACGTGAGGGAGATTGGCAAGGACTGGGCCAGGG
CCGAGGACTCTGAGTGGAAGGCGAACCATCAATTGGAGTGGGGGGATCTC
ACCGACGTGAGGGAGATTGGCAAGGGACTGACGTGCACAGTGTATACGGC
GAAGGTCCCCGGTCGACGAGCCAAAGTGATCGCCAAGGTGGCGCGACAGA
GGAACAAGGGGCGCCTCGAGGACCAGGCGGAGAGACAGCTGGAGGCGGAG
TTCAATGGACTGACGTGCACAGTGTATACGGCGAAGGTCCCCGGTCGACG
AGCCAAAGTGATCGCCAAGGTGGCGCGACAGAGGAACAAGGGGCGCCTCG
AGGACCAGGCGGAGAGACAGCTGGAGGCGGAGTTCAATGTGCAACACCCG
AACGTGGTAGAGCTACTGGGTGCCGGTTTCACGGGCGAGGGAAGGCGTTT
CATTTTGTTGGAGCACCTCCCGGGGGGCACGCTCGGGACGTTTCGCGCCC
TAAGCTCGAGGGAAGAGATGCGCGGCCCTTCGCCGTACACGTGCAACACC
CGAACGTGGTAGAGCTACTGGGTGCCGGTTTCACGGGCGAGGGAAGGCGT
TTCATTTTGTTGGAGCACCTCCCGGGGGGCACGCTCGGGACGTTTCGCGC
CCTAAGCTCGAGGGAAGAGATGCGCGGCCCTTCGCCGTACACAATACTTA
AAAAGGGGCTCCGGCTGCTATCGCGAGACTTCAAACTCACGCTGACGAAG
GTTTTGCAAGTGGCGGAGGCGTTGAACTATCTGCAGAAGGGTGCCATCCC
AGAATACTTAAAAAGGGGCTCCGGCTGCTATCGCGAGACTTCAAACTCAC
GCTGACGAAGGTTTTGCAAGTGGCGGAGGCGTTGAACTATCTGCAGAAGG
GTGCCATCCCAGGCGCCGTGGTGCTCCACAGAGATGTTCGTCCAGACAAT
ATCGGGATGGCTCGCGGGGGTGTCGTAAAGGCGCCGTGGTGCTCCACAGA
GATGTTCGTCCAGACAATATCGGGATGGCTCGCGGGGGTGTCGTAAAGAT
GTTCGACTTTGGTCTGTCCAAGGCTCTTGGTAAGAGCAGTAACGGTTTGA
TCATTCCCATGATTGGAGAGGCGGGGAGCCTCAGGATGTTCGACTTTGGT
CTGTCCAAGGCTCTTGGTAAGAGCAGTAACGGTTTGATCATTCCCATGAT
TGGAGAGGCGGGGAGCCTCAGG
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