mRNA_H-elongata_contig67615.14370.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67615.14370.1
Unique NamemRNA_H-elongata_contig67615.14370.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67615.14370.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.000e-29
Identity = 65/99 (65.66%), Postives = 75/99 (75.76%), Query Frame = 1
Query:    1 MEVSASKTAPGITVSEV----VGGKTVYNDPLGWWRTKEREFTTLAGLARRVLAIPASQAQSERMFSTVGLIVTPTRNRLLPDNAELLVYLRNVCDVVD 285
            MEVSA K APGI V ++     G K V+N+PL  WR K+ E+  LA LARRVLAIP+SQAQSER+FST GL VTPTR+RLL +N ELLVYLRNV  VVD
Sbjct:  453 MEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVD 551          
BLAST of mRNA_H-elongata_contig67615.14370.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.180e-22
Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    4 EVSASKTAPGITVSEVVGGKTVYNDPLGWWRTKEREFTTLAGLARRVLAIPASQAQSERMFSTVGLIVTPTRNRLLPDNAELLVYLRN 267
            EV A K  PG+ VS    G+ V   PL WWR K RE+  LA LARRVL IPA QAQSER+FS+ GL+VT TR R+ P+N  L+V+LRN
Sbjct:  455 EVDAFKITPGLAVSWEEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRN 542          
BLAST of mRNA_H-elongata_contig67615.14370.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.400e-20
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    1 MEVSASKTAPGITV-SEVVGGKTVYNDPLGWWRTKEREFTTLAGLARRVLAIPASQAQSERMFSTVGLIVTPTRNRLLPDNAELLVYLRNVCDVVD 285
            +E++A K + GI +  E   G  VY DPL WWR +  +F  LA LARRVLAIPA+QA+SER+FS  G IVT  RN L P   ELLV LR+   +V+
Sbjct:  196 VELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVE 291          
BLAST of mRNA_H-elongata_contig67615.14370.1 vs. uniprot
Match: UPI001D00F907 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Cotesia glomerata TaxID=32391 RepID=UPI001D00F907)

HSP 1 Score: 76.3 bits (186), Expect = 2.970e-14
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    4 EVSASKTAPGITVSEVVGGKTVYNDPLGWWRTKEREFTTLAGLARRVLAIPASQAQSERMFSTVGLIVTPTRNRLLPDNAELLVYL 261
            E+++ K  P I   +         +PL WW +K  EF  LA LARR L +PAS   SER FST G I++  RN LLP+NA LL++L
Sbjct:  292 EINSFKMEPNIPCGD---------NPLHWWHSKRHEFPKLARLARRYLGVPASSTPSERAFSTAGNIISSKRNCLLPENANLLIFL 368          
BLAST of mRNA_H-elongata_contig67615.14370.1 vs. uniprot
Match: A0A6J1SJC7_FRAOC (zinc finger BED domain-containing protein 1-like n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SJC7_FRAOC)

HSP 1 Score: 76.3 bits (186), Expect = 3.800e-14
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1
Query:   79 PLGWWRTKEREFTTLAGLARRVLAIPASQAQSERMFSTVGLIVTPTRNRLLPDNAELLVYL 261
            PL WW+T+++ + TLA LARR LA+PA+ A SER FST G  V P R+ LLP+N  +LV+L
Sbjct:  567 PLTWWKTRQKRYPTLARLARRYLAVPATSASSERDFSTAGNTVRPNRSCLLPENVSILVFL 627          
BLAST of mRNA_H-elongata_contig67615.14370.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.430e-13
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 MEVSASKTAPGITVSEV-VGGKTVYNDPLGWWRTKEREFTTLAGLARRVLAIPASQAQSERM 183
            +EV++ +T PGI++      GK VYNDPL WWRT++ EF  LA LARRVLAIP+SQA SER+
Sbjct:  488 LEVASFQTTPGISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549          
BLAST of mRNA_H-elongata_contig67615.14370.1 vs. uniprot
Match: UPI0017856BD2 (zinc finger BED domain-containing protein 4-like n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI0017856BD2)

HSP 1 Score: 68.2 bits (165), Expect = 2.470e-12
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   76 DPLGWWRTKEREFTTLAGLARRVLAIPASQAQSERMFSTVGLIVTPTRNRLLPDNAELLVYLRNVCDVVD 285
            DPL WW+   +E+  L  LA + L  P S   SER+FS  G I    RNRLLPDNAE+L+++     +V+
Sbjct:   86 DPLTWWKYSRKEYPNLFTLAMKYLCAPPSSVNSERVFSASGNIYVENRNRLLPDNAEMLLFVMKNIQIVN 155          
BLAST of mRNA_H-elongata_contig67615.14370.1 vs. uniprot
Match: UPI001ED86775 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86775)

HSP 1 Score: 69.3 bits (168), Expect = 2.530e-12
Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   64 TVYNDPLGWWRTKEREFTTLAGLARRVLAIPASQAQSERMFSTVGLIVTPTRNRLLPDNAELLVYL 261
            T+ +DP  WW+    ++  ++ LA++ L IPA++  SER+FS+ G ++T  R RLLP+NAE LV+L
Sbjct:  143 TINDDPFQWWQDNRFKYELISPLAQKYLGIPATEVASERVFSSAGNVITSRRTRLLPENAETLVFL 208          
BLAST of mRNA_H-elongata_contig67615.14370.1 vs. uniprot
Match: T1EL08_HELRO (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Helobdella robusta TaxID=6412 RepID=T1EL08_HELRO)

HSP 1 Score: 65.5 bits (158), Expect = 3.660e-12
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   76 DPLGWWRTKEREFTTLAGLARRVLAIPASQAQSERMFSTVGLIVTPTRNRLLPDNAELLVYLR 264
            DP  WW+    ++ T++ +A+  LA P +   SER+FST G I+T  R RLLPDNAE L++L+
Sbjct:    4 DPATWWKFNTAKYPTISKVAQVYLAPPPTSVPSERLFSTAGDIITEHRTRLLPDNAEKLIFLK 66          
BLAST of mRNA_H-elongata_contig67615.14370.1 vs. uniprot
Match: UPI000C6E0CA8 (zinc finger BED domain-containing protein 4-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E0CA8)

HSP 1 Score: 70.1 bits (170), Expect = 5.450e-12
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   70 YNDPLGWWRTKEREFTTLAGLARRVLAIPASQAQSERMFSTVGLIVTPTRNRLLPDNAELLVYL 261
            ++DP  WWR+ +  F  L+ LA + L+ PAS  +SER+FST G I  P RNRL P+N E+L++L
Sbjct:  441 HSDPFLWWRSSKELFPNLSELAMKYLSAPASSIESERIFSTGGNIYEPARNRLCPENGEILMFL 504          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67615.14370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI1.000e-2965.66Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JHP9_9PHAE1.180e-2257.95Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5JWI1_9PHAE4.400e-2052.08Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI001D00F9072.970e-1445.35E3 SUMO-protein ligase ZBED1-like n=1 Tax=Cotesia ... [more]
A0A6J1SJC7_FRAOC3.800e-1455.74zinc finger BED domain-containing protein 1-like n... [more]
A0A6H5KUY5_9PHAE2.430e-1359.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0017856BD22.470e-1244.29zinc finger BED domain-containing protein 4-like n... [more]
UPI001ED867752.530e-1243.94E3 SUMO-protein ligase ZBED1-like n=1 Tax=Ischnura... [more]
T1EL08_HELRO3.660e-1246.03Dimer_Tnp_hAT domain-containing protein n=4 Tax=He... [more]
UPI000C6E0CA85.450e-1248.44zinc finger BED domain-containing protein 4-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67615contigH-elongata_contig67615:413..697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue9.8e-27
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931067.3157911-CDS-H-elongata_contig67615:412..6971622931067.3157911-CDS-H-elongata_contig67615:412..697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67615 413..697 -
1691679684.3520517-CDS-H-elongata_contig67615:412..6971691679684.3520517-CDS-H-elongata_contig67615:412..697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67615 413..697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67615.14370.1prot_H-elongata_contig67615.14370.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67615 413..697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67615.14370.1

>prot_H-elongata_contig67615.14370.1 ID=prot_H-elongata_contig67615.14370.1|Name=mRNA_H-elongata_contig67615.14370.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MEVSASKTAPGITVSEVVGGKTVYNDPLGWWRTKEREFTTLAGLARRVLA
IPASQAQSERMFSTVGLIVTPTRNRLLPDNAELLVYLRNVCDVVD
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mRNA from alignment at H-elongata_contig67615:413..697-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67615.14370.1 ID=mRNA_H-elongata_contig67615.14370.1|Name=mRNA_H-elongata_contig67615.14370.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig67615:413..697- (Himanthalia elongata Himel1 dioecious)
ATGGAGGTCTCCGCCTCCAAGACTGCACCTGGCATAACGGTTTCGGAGGT GGTAGGAGGAAAGACCGTCTACAACGATCCTCTCGGCTGGTGGCGCACCA AGGAACGAGAATTCACTACCCTGGCCGGACTAGCTCGTCGTGTGCTTGCC ATTCCTGCCTCGCAAGCACAATCCGAGCGCATGTTTTCTACGGTAGGGCT AATCGTAACGCCCACGCGGAATAGACTTCTTCCTGATAACGCAGAGCTTC TCGTGTACTTGCGCAACGTATGCGATGTGGTAGAC
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Coding sequence (CDS) from alignment at H-elongata_contig67615:413..697-

>mRNA_H-elongata_contig67615.14370.1 ID=mRNA_H-elongata_contig67615.14370.1|Name=mRNA_H-elongata_contig67615.14370.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig67615:413..697- (Himanthalia elongata Himel1 dioecious)
ATGGAGGTCTCCGCCTCCAAGACTGCACCTGGCATAACGGTTTCGGAGGT
GGTAGGAGGAAAGACCGTCTACAACGATCCTCTCGGCTGGTGGCGCACCA
AGGAACGAGAATTCACTACCCTGGCCGGACTAGCTCGTCGTGTGCTTGCC
ATTCCTGCCTCGCAAGCACAATCCGAGCGCATGTTTTCTACGGTAGGGCT
AATCGTAACGCCCACGCGGAATAGACTTCTTCCTGATAACGCAGAGCTTC
TCGTGTACTTGCGCAACGTATGCGATGTGGTAGACATGGAGGTCTCCGCC
TCCAAGACTGCACCTGGCATAACGGTTTCGGAGGTGGTAGGAGGAAAGAC
CGTCTACAACGATCCTCTCGGCTGGTGGCGCACCAAGGAACGAGAATTCA
CTACCCTGGCCGGACTAGCTCGTCGTGTGCTTGCCATTCCTGCCTCGCAA
GCACAATCCGAGCGCATGTTTTCTACGGTAGGGCTAATCGTAACGCCCAC
GCGGAATAGACTTCTTCCTGATAACGCAGAGCTTCTCGTGTACTTGCGCA
ACGTATGCGATGTGGTAGAC
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