mRNA_H-elongata_contig67462.14357.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67462.14357.1
Unique NamemRNA_H-elongata_contig67462.14357.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67462.14357.1 vs. uniprot
Match: K7ZUA3_ASCNO (Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=K7ZUA3_ASCNO)

HSP 1 Score: 132 bits (332), Expect = 2.740e-34
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    1 FHKTLPHDGLGQVDPTAYQQLLECISSNDINVCEQVPSGANGNGGTKLVNPLGGGGHQVDGADSDNIFIKMPDNLLSERL 240
            FHK+LPHD +G+V+P AYQ LL+CI SNDINVC+QVPSG   +G  KLVNPLGGGGHQVDGADSDNIFIK PDNLLSERL
Sbjct:   94 FHKSLPHDDVGRVNPEAYQLLLDCIESNDINVCDQVPSGVESDG-RKLVNPLGGGGHQVDGADSDNIFIKQPDNLLSERL 172          
BLAST of mRNA_H-elongata_contig67462.14357.1 vs. uniprot
Match: A0A3G3BM34_SACJA (Vanadium-dependent bromine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM34_SACJA)

HSP 1 Score: 114 bits (286), Expect = 6.100e-28
Identity = 57/80 (71.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 FHKTLPHDGLGQVDPTAYQQLLECISSNDINVCEQVPSGANGNGGTKLVNPLGGGGHQVDGADSDNIFIKMPDNLLSERL 240
            FHKTLPHD  GQVD  AY++L ECI ++DINVC+ VPSGA  NG  KL NPLGG  HQV GADSDNIFI  PD+LLSERL
Sbjct:  126 FHKTLPHDKFGQVDEDAYKKLQECIFTSDINVCDDVPSGAKKNG-AKLTNPLGGTAHQVAGADSDNIFIPTPDSLLSERL 204          
BLAST of mRNA_H-elongata_contig67462.14357.1 vs. uniprot
Match: D8LTP5_ECTSI (Vanadium-dependent bromoperoxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP5_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 5.260e-27
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 FHKTLPHDGLGQVDPTAYQQLLECISSNDINVCEQVPSGANGNGGTKLVNPLGGGGHQVDGADSDNIFIKMPDNLLSERL 240
            FHK+LPHD  G V  T+YQ+LL+C+ S D+NVC+QVPSGA+  G  K++NPLGG  HQVDGADSDN+FI  PD +LSE L
Sbjct:   91 FHKSLPHDKFGTVSKTSYQKLLDCVFSADVNVCDQVPSGASARG-AKMINPLGGTAHQVDGADSDNVFITTPDGVLSEEL 169          
BLAST of mRNA_H-elongata_contig67462.14357.1 vs. uniprot
Match: A0A411NJW8_SACJA (Vanadium-dependent bromoperoxidase (Fragment) n=3 Tax=Saccharina japonica TaxID=88149 RepID=A0A411NJW8_SACJA)

HSP 1 Score: 107 bits (268), Expect = 1.700e-25
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 FHKTLPHDGLGQVDPTAYQQLLECISSNDINVCEQVPSGANGNGGTKLVNPLGGGGHQVDGADSDNIFIKMPDNLLSERL 240
            +HKTLPH+  GQV+   YQ+LL+C+ ++DINVC+ VP+G    G  KL NPLGG  HQVDGADSDN+FI  PD+LLSERL
Sbjct:  133 YHKTLPHNKYGQVNKDDYQKLLDCVRTSDINVCDNVPAG----GSAKLTNPLGGTAHQVDGADSDNVFIATPDSLLSERL 208          
BLAST of mRNA_H-elongata_contig67462.14357.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.790e-10
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 FHKTLPHDGLGQVDPTAYQQLLECISSNDINVCEQVPSGANGNGGTKLVNPLGGGGHQVDGADSDNIFIKMPDNLLSERL 240
            FHK+LPHD LGQVD  A++ L ECI+  D ++CE VP+G  G    +L NPL G   ++ GA    + +     L SE L
Sbjct:  113 FHKSLPHDSLGQVDSAAFEALTECIAQGDFDICELVPAGDVG----RLSNPLAGITVEMAGAAGSALTLPPASALDSEDL 188          
BLAST of mRNA_H-elongata_contig67462.14357.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 8.530e-10
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 FHKTLPHDGLGQVDPTAYQQLLECISSNDINVCEQVPSGANGNGGTKLVNPLGGGGHQVDGADSDNIFIKMPDNLLSERL 240
            FHK+LPHD LGQV+   +  L+ECI+  D + CE VP+G +G    +L NPLGG   ++ GA    + +     + SE L
Sbjct:  113 FHKSLPHDSLGQVNSEDFDLLMECIAQGDFDTCELVPAGDDG----RLSNPLGGIAVEMAGAAGPALTLPPASAINSEDL 188          
BLAST of mRNA_H-elongata_contig67462.14357.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 62.4 bits (150), Expect = 1.600e-9
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    1 FHKTLPHDGLGQVDPTAYQQLLECISSNDINVCEQVPSGANGNGGTKLVNPLGGGGHQVDGADSDNIFIKMPDNLLSERL 240
            FHK+LPHD LGQV    +++L+EC++S D + C++VP+G   N    LVNPLGG  + + G     + I     L SE L
Sbjct:  106 FHKSLPHDELGQVFSFDFEELIECVASGDFDTCQEVPAG---NVEGFLVNPLGGLANDMAGPAGHALTIPAAPALDSEDL 182          
BLAST of mRNA_H-elongata_contig67462.14357.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 57.4 bits (137), Expect = 9.190e-8
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    1 FHKTLPHDGLGQVDPTAYQQLLECISSNDINVCEQVPSG-ANGNGGTKLVNP 153
            FHK+LPHD LGQVD  A+  L +CI + D+++CE VP G + G+   +LVNP
Sbjct:   54 FHKSLPHDDLGQVDADAFAALEDCILNGDLSICEDVPVGNSEGDPVGRLVNP 105          
BLAST of mRNA_H-elongata_contig67462.14357.1 vs. uniprot
Match: A0A2V9AVC1_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9AVC1_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 2.950e-7
Identity = 29/80 (36.25%), Postives = 45/80 (56.25%), Query Frame = 1
Query:    1 FHKTLPHDGLGQVDPTAYQQLLECISSNDINVCEQVPSGANGNGGTKLVNPLGGGGHQVDGADSDNIFIKMPDNLLSERL 240
            F KTLPHD  G+V+ +AYQ L+  +SS + +  E +  G    G  KL NP  G  + ++G D+ N+ +  P  L S ++
Sbjct:   84 FTKTLPHDTYGRVNLSAYQSLINALSSGNPSDFENITLG----GTVKLTNPQSGLAYDLEGMDAHNLTVLAPPTLASPQM 159          
BLAST of mRNA_H-elongata_contig67462.14357.1 vs. uniprot
Match: A0A2V9DH74_9BACT (Phosphoesterase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9DH74_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 1.530e-6
Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 1
Query:    1 FHKTLPHDGLGQVDPTAYQQLLECISSNDINVCEQVPSGANGNGGTKLVNPLGGGGHQVDGADSDNIFIKMPDNLLS 231
            F K LPH+GLG VDP AYQ LL+ ++S +    E++  G N      LVNP  G    ++G DS  + +  P  + S
Sbjct:   58 FCKGLPHNGLGLVDPGAYQSLLDALASGEPEDFERISMGGN----VGLVNPQSGLAFDLEGTDSHQLAMGPPPAVAS 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67462.14357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
K7ZUA3_ASCNO2.740e-3478.75Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascop... [more]
A0A3G3BM34_SACJA6.100e-2871.25Vanadium-dependent bromine peroxidase n=1 Tax=Sacc... [more]
D8LTP5_ECTSI5.260e-2763.75Vanadium-dependent bromoperoxidase n=2 Tax=Ectocar... [more]
A0A411NJW8_SACJA1.700e-2562.50Vanadium-dependent bromoperoxidase (Fragment) n=3 ... [more]
B7ZGM6_9PHAE1.790e-1043.75Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
Q4LDE6_9PHAE8.530e-1041.25Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0A3G3BM28_SACJA1.600e-942.50Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
PRXV_ASCNO9.190e-851.92Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
A0A2V9AVC1_9BACT2.950e-736.25Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A2V9DH74_9BACT1.530e-638.96Phosphoesterase n=1 Tax=Acidobacteria bacterium Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67462contigH-elongata_contig67462:2026..2924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue4.7e-22
Seed eggNOG ortholog2880.D8LTP5
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size241
Cds size240
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67462.14357.1prot_H-elongata_contig67462.14357.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67462 2026..2923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.9921165-CDS-H-elongata_contig67462:2025..20611622931065.9921165-CDS-H-elongata_contig67462:2025..2061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67462 2026..2061 +
1691679683.8331702-CDS-H-elongata_contig67462:2025..20611691679683.8331702-CDS-H-elongata_contig67462:2025..2061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67462 2026..2061 +
1622931066.0108874-CDS-H-elongata_contig67462:2451..26061622931066.0108874-CDS-H-elongata_contig67462:2451..2606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67462 2452..2606 +
1691679683.8425877-CDS-H-elongata_contig67462:2451..26061691679683.8425877-CDS-H-elongata_contig67462:2451..2606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67462 2452..2606 +
1622931066.0461779-CDS-H-elongata_contig67462:2874..29231622931066.0461779-CDS-H-elongata_contig67462:2874..2923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67462 2875..2923 +
1691679683.8514135-CDS-H-elongata_contig67462:2874..29231691679683.8514135-CDS-H-elongata_contig67462:2874..2923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67462 2875..2923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67462.14357.1

>prot_H-elongata_contig67462.14357.1 ID=prot_H-elongata_contig67462.14357.1|Name=mRNA_H-elongata_contig67462.14357.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
FHKTLPHDGLGQVDPTAYQQLLECISSNDINVCEQVPSGANGNGGTKLVN
PLGGGGHQVDGADSDNIFIKMPDNLLSERL
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mRNA from alignment at H-elongata_contig67462:2026..2924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67462.14357.1 ID=mRNA_H-elongata_contig67462.14357.1|Name=mRNA_H-elongata_contig67462.14357.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=899bp|location=Sequence derived from alignment at H-elongata_contig67462:2026..2924+ (Himanthalia elongata Himel1 dioecious)
TTCCACAAGACCCTCCCGCACGACGGCCTCGGCCAGGTTAGACGATGAAC GATGTCGTTCTGCAATTTACAGATCTTGGCATTGAACATAGCTGCTCAAA GCTAGATCACATTACACCACTGAAGCTTGTGCTTCCTCGTCAATGAAGGC TAATATTTTATTATTATTATTTCTGCTCGCCGCCGCCTAGGTTTACCAGA GCATACCTGCAGAATGCGCTCGTCGATTTAGCTAGTATAAATCATAATGT ATACGAGTTACTAGGATTGCCATCAGCGTATGGTAGCCTTTCCGAAATGG GGTATTGCATGTGCTCATCGGTGGAGGTTTGCTTGTCAATCGGTTGTTGA CCATTTTTGTTATTATCATTCTCCAACGCACGCGGATGTTTCCCAACCGG ATCGATCCCGTTTTAAAATGCTACAGGTGGATCCGACGGCGTACCAGCAG CTCCTGGAGTGCATCTCGTCCAACGACATTAATGTGTGCGAACAGGTGCC CTCAGGGGCAAATGGCAATGGAGGCACGAAGCTCGTCAATCCTCTCGGGG GTGGTGGTCATCAGGTGGACGGTGCCGACAGGTATGTTACGCGCGTCCGC CTATATGCATATTGGCACTGCAGAGCTGATAAAGGAGGCATTTTTAATCC TGTTGGAGAGTCCAGCATGCAACCGTAAGCTGGTTGTTTTCCTCCCGATG GTCCTGGGGTGGTGTCAAATGTTTCTTGTGCCTACCTATTGTTACAAACA AGATGATTCCGCCATCGGCAATTCTGACCGCTTGCTCGTGCTGTTTTGCT CTTGGTCCTGATCTGCCCTTGGTTCCTATTCTGATCCCCGATTATACAGT GATAACATCTTCATCAAAATGCCTGACAATCTTCTTTCGGAACGACTGG
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Coding sequence (CDS) from alignment at H-elongata_contig67462:2026..2924+

>mRNA_H-elongata_contig67462.14357.1 ID=mRNA_H-elongata_contig67462.14357.1|Name=mRNA_H-elongata_contig67462.14357.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig67462:2026..2924+ (Himanthalia elongata Himel1 dioecious)
TTCCACAAGACCCTCCCGCACGACGGCCTCGGCCAGTTCCACAAGACCCT
CCCGCACGACGGCCTCGGCCAGGTGGATCCGACGGCGTACCAGCAGCTCC
TGGAGTGCATCTCGTCCAACGACATTAATGTGTGCGAACAGGTGCCCTCA
GGGGCAAATGGCAATGGAGGCACGAAGCTCGTCAATCCTCTCGGGGGTGG
TGGTCATCAGGTGGACGGTGCCGACAGGTGGATCCGACGGCGTACCAGCA
GCTCCTGGAGTGCATCTCGTCCAACGACATTAATGTGTGCGAACAGGTGC
CCTCAGGGGCAAATGGCAATGGAGGCACGAAGCTCGTCAATCCTCTCGGG
GGTGGTGGTCATCAGGTGGACGGTGCCGACAGTGATAACATCTTCATCAA
AATGCCTGACAATCTTCTTTCGGAACGACTGTGATAACATCTTCATCAAA
ATGCCTGACAATCTTCTTTCGGAACGACTG
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