mRNA_H-elongata_contig11859.1433.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11859.1433.1 vs. uniprot
Match: A0A6H5KLN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN8_9PHAE) HSP 1 Score: 598 bits (1543), Expect = 1.280e-199 Identity = 348/609 (57.14%), Postives = 413/609 (67.82%), Query Frame = 1
Query: 190 PAKQGNPVSTIRHRRRGSESAISFSMS-RP--STTDVSPRGRPGGNIPHYPYPRHRATATSSGFFGWKNPNENSVSAEDDGIPKLVSLSDLIR-DAEVPATLLYEPAMETGAIMTARDL--GKFPQHAMHGGTVGAGDALKAAEHGDSIHLSKFLQDGGDPETVKHLHHMRWSLLHLAAGCATMGGRPLSISYRSRPEPDCTDGYATCVSELLAAGADPNVASSGGGGVTPLMSAAWAGSKDSCALLLRAGAQVDKRADDGWTAIDFALNVR--GRGTSSG----VLAVLRDPPKKVPRSPTTVRATLVKFSNLEPEDAVPPVELRWRVSSQASLAPTTCGDVERYYIKCWCRGKGKEVIMTKTSTEDMSRRDFCRNQIIERGIALRKNLCLPQSQTASTIVHGLQAGEIYSFTVSCVAEVEGALRHSPPSCMSKPLHISDSKEDHNWPLGGIVSMVKGKETPSPVGPGDGEVSQAKLAHRGPGQQPSPIIVDQRRGTGKGHGVSWAKDESERSVPLRHATGPFASEALNTSPSGRLDR-------EWQPSGDPPYRSPMNRRSQSHGIT-TRIDSFAQASSRTSNREVLGGQGYSPPHSSPPLEKGTE 1956
P G HRR SE++ +F RP ST+ SPR R GG S G +GW+ + N+ S DD P+LVSL+DLIR + +VPATLLYE +T A M ARD+ G AM+GG VG +AL+AAEHG+S+ LSKFLQDGG+P+T+ LHH+RWSLLHLAAGC++MGGR S+R RPEPDC DGY TCVSELLAAGADPN+ SS G TPLMSAA GSK+ C LLLRAGA++D RADDG TA DFA R G G+S G VL VLR+PPKK+PRSPT V ATL + S+LEPE+ VPPVE+RWRV SQASLAPT CGDVER+Y+K WCRGKGKEVI TKTST D+ RRDFCRNQII+RGIALRKNLCLPQSQT S IVHGL+AG +YSFTVSCVAEVEGALRHSPPSCMSKPL I +SKEDH W LGG++ MV GK+TPS G+G A R Q SP +DQRRG K VSWAKD+ ++ R S+ + SPSG R EW+P P P+ RRSQS+ + TR D+F Q S T++ + + PP +S LE+GTE
Sbjct: 9 PEVAGRKTGNRAHRRSESEASGAFGGGPRPFSSTSYDSPRWRGGGA---------NKQRGSGGRYGWRANDGNNASPADDENPRLVSLADLIRKEDKVPATLLYEHPGDTDAPMDARDIEAGGLTHQAMNGGAVGMQEALQAAEHGNSVRLSKFLQDGGNPDTLSRLHHLRWSLLHLAAGCSSMGGRLAFASHRRRPEPDCNDGYVTCVSELLAAGADPNITSSSLG-YTPLMSAALTGSKECCWLLLRAGARLDMRADDGRTAFDFAQKARHLGGGSSGGIHDSVLDVLREPPKKIPRSPTMVIATLAERSSLEPEEEVPPVEVRWRVPSQASLAPTLCGDVERFYLKTWCRGKGKEVIRTKTSTADVPRRDFCRNQIIDRGIALRKNLCLPQSQTTSAIVHGLRAGGVYSFTVSCVAEVEGALRHSPPSCMSKPLLIPESKEDHQWRLGGMLQMVTGKDTPSSGTTGEG--GAAPQVRRVTNQ--SPTSIDQRRGPAKSFSVSWAKDDIAPTIDQRQPASYRVSDDVIVSPSGDFGRSLTSNASEWEPKHASPVV-PLRRRSQSYASSATRADTFLQTS--TADETIRASMAFPPPSTSSHLEEGTE 600
BLAST of mRNA_H-elongata_contig11859.1433.1 vs. uniprot
Match: D7FV58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV58_ECTSI) HSP 1 Score: 398 bits (1022), Expect = 4.050e-126 Identity = 225/366 (61.48%), Postives = 265/366 (72.40%), Query Frame = 1
Query: 226 HRRRGSESAISFSMS-RP--STTDVSPRGRPGGNIPHYPYPRHRATATSSGFFGWKNPNENSVSAEDDGIPKLVSLSDLIR-DAEVPATLLYEPAMETGAIMTARDL--GKFPQHAMHGGTVGAGDALKAAEHGDSIHLSKFLQDGGDPETVKHLHHMRWSLLHLAAGCATMGGRPLSISYRSRPEPDCTDGYATCVSELLAAGADPNVASSGGGGVTPLMSAAWAGSKDSCALLLRAGAQVDKRADDGWTAIDFALNVR--GRGTSSG----VLAVLRDPPKKVPRSPTTVRATLVKFSNLEPEDAVPPVELRWRVSSQASLAPTTCGDVERYYIKCWCRGKGKEVIMTKTSTEDMSRRDFCRNQ 1287
HRR SE++ +F RP ST+ SPR R GG S G +GW+ + N+VS DD P+LVSL+DLIR + +VPATLLYE +T A M ARD+ G AM+GG VG +AL+AAEHG+S+ LSKFLQDGG+P+T+ LHH+RWSLLHLAAGC++MGGR S+R RPEPDC DGY TCVSELLAAGADPN+ SS G TPLMSAA GSK+ C LLLRAGA++D RADDG TA DFA R G G+S G VL VLR+PPKK+PRSPT V A L + S+LEPE+ VPPVE+RWRV SQASLAPT CGDVER+Y+K WCRGKGKEVI TKTST D+ RRDFCRNQ
Sbjct: 21 HRRSESEASGAFGGGPRPFTSTSYDSPRWRGGGA---------NKQRGSGGRYGWRANDGNNVSPADDENPRLVSLADLIRKEDKVPATLLYEHPGDTDAPMDARDIEAGGLTHQAMNGGAVGMQEALQAAEHGNSVRLSKFLQDGGNPDTLSRLHHLRWSLLHLAAGCSSMGGRLAFASHRRRPEPDCNDGYVTCVSELLAAGADPNITSSSLG-YTPLMSAALTGSKECCWLLLRAGARLDMRADDGRTAFDFAQKARHLGGGSSGGTHDSVLDVLREPPKKIPRSPTLVIAALAERSSLEPEEEVPPVEVRWRVPSQASLAPTLCGDVERFYLKTWCRGKGKEVIRTKTSTVDVPRRDFCRNQ 376
BLAST of mRNA_H-elongata_contig11859.1433.1 vs. uniprot
Match: A0A7S2CTM4_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTM4_9STRA) HSP 1 Score: 310 bits (795), Expect = 1.480e-91 Identity = 167/320 (52.19%), Postives = 216/320 (67.50%), Query Frame = 1
Query: 565 GTVGAGDALKAAEHGDSIHLSKFLQDGGDPETVKHLHHMRWSLLHLAAGCATMGGRPLSISYRSRPEPDCTDGYATCVSELLAAGADPNVASSGGGGVTPLMSAAWAGSKDSCALLLRAGAQVDKRADDGWTAIDFALNVRGRGTSSGVLAVLRDPPKKVPRSPTTVRATLVKFSNLEPEDAVPPVELRWRVSSQASLAPTTCGDVERYYIKCWCRGKGKEVIMTKTSTEDMSRRDFCRNQIIERGIALRKNLCLPQSQTASTIVHGLQAGEIYSFTVSCVAEVEGALRHSPPSCMSKPLHISDSKEDHNWPLGGIVSMV 1524
G V DALKAAEHG+S L+ +L GGDP V LHHM WSLLHLA GCA MGG +S +YR+RPEPDC +G+ATCVS L+AAGADPNVAS G TPLM A+ +G D C LLL+AGA V A DG TA+D A R VL VL +PP+ +PRSP V A L+ + E ED VE+RW++ + S+A CG+++RY ++ + +G+ EV+ + RRDFC+NQ+++RGIALR+NL LPQ +TAST++HGL G Y FTVSC+AE++G++R SPPS MSKPL I S E+ W +G I+ V
Sbjct: 16 GAVSTQDALKAAEHGNSDVLAAYLHAGGDPMAVSRLHHMGWSLLHLATGCALMGG--ISNTYRTRPEPDCPNGFATCVSLLMAAGADPNVASKQGH-YTPLMGASLSGDADCCRLLLQAGAIVKHMALDGQTALDAANRSRFADGHMRVLQVLGNPPRLLPRSPLEVTARLLDY--YEGEDRERDVEVRWKIPTTTSMALVKCGEIQRYVVRTYVKGQELEVMHSAVGPGRRQRRDFCQNQVVDRGIALRQNLALPQPRTASTLIHGLIPGVTYHFTVSCIAEIDGSIRDSPPSLMSKPLDIP-SYEEEEWNIGEILDKV 329
BLAST of mRNA_H-elongata_contig11859.1433.1 vs. uniprot
Match: A0A835YST7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST7_9STRA) HSP 1 Score: 282 bits (721), Expect = 1.450e-77 Identity = 197/522 (37.74%), Postives = 250/522 (47.89%), Query Frame = 1
Query: 421 GIPKLVSLSDLIRDAEV-------PATLLYEPAMETGAIMTARDLGKFP-QHAMHGGTVGAGDALKAAEHGDSIHLSKFLQDGGDPETVKHLHHMRWSLLHLAAG------------------------CATMGGRPLSIS---YRSRPEPDCTDGYATCVSELLAAGADPNVASSGGGGVTPLMSAAWAGSKDSCALLLRAGAQVDKRADDGWTAIDFALNVRGRGTSSGVLA-----------------------------------------------------------------VLRDPPKKVPRSPTTVRATLVKFSNLEPEDA-------------------------------------------VPPVELRWRVSSQASLAPTTCGDVERYYIKCWCRGKGKEVIMTKTSTEDMSRRDFCRNQIIERGIALRKNLCLPQSQTASTIVHGLQAGEIYSFTVSCVAEVEGALRHSPPSCMSKPLHISDSKEDHNWPLGGIVS--MVKGKETPSPV 1551
G KL+SLSDLIR E PA LLY E G ++ K + A++ G VG +AL+AAEHG+S L++FLQD GDP T LHHMRWSLLHLAAG CA MG LS++ +RSRPEPDC DGYA C++ LLAAGADPN A+S GG TPLM AA GS +SC LLLRAGA R G TA+DFA R + A VL++PP+ VPRSP V A L S ++ E E+RW + SQASL P CG ERY +KCW +G+ +V+ T T RRDFC++ ++RGIALR NL L +TASTI+H L+ G YSFTVS +AEV+GAL+ SPPS +SK ++I +K+D W +GG++S M + + T P+
Sbjct: 181 GTEKLMSLSDLIRREEGGRTRGGGPAPLLYSNEGEAGELLDGDGFDKGGGRKAVNNGAVGTQEALQAAEHGNSALLARFLQDNGDPRTTSRLHHMRWSLLHLAAGFNXXXXXXXXXXXXXXXXXXXXXGCAGMGSA-LSLAGAAHRSRPEPDCNDGYAACIALLLAAGADPN-ATSIQGGYTPLMGAAVTGSAESCWLLLRAGANPLARTAAGQTALDFAQTPRAGAPAGAHQAALKXXXXXXXXXXXXXXXXTALDFAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLQNPPRLVPRSPLQVVARLADRSLVDEEPCRRCLXXXXXXXXXXXXXXXXEASHGFRLVTRSQEDDSQCVEXXXXXXEVRWLIPSQASLLPAHCGAAERYLVKCWSQGQASDVVRTNTGNSLKPRRDFCKHGAMDRGIALRNNLSLQAPRTASTIIHNLRPGREYSFTVSLLAEVDGALQQSPPSAVSKTIYIPKTKDDAQWSVGGVLSKMMPRAQGTDGPL 700
BLAST of mRNA_H-elongata_contig11859.1433.1 vs. uniprot
Match: A0A8J2SBP4_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SBP4_9STRA) HSP 1 Score: 138 bits (348), Expect = 6.240e-32 Identity = 87/206 (42.23%), Postives = 111/206 (53.88%), Query Frame = 1
Query: 583 DALKAAEHGDSIHLSKFLQDGGDPETVKHLHHMRWSLLHLAAGCATMGGRPLSISYRSRPEPDCTDGYATCVSELLAAGADPNVASSGGGGVTPLMSAAWAGSKDSCALLLRAGAQVDKRADDGWTAIDFALNVRGRGTSSGVLAVLRDPPKKVPRSPTTVRATLVKFSNLEPEDAVPPVELRWRVSSQASLAPTTCGDVERYYIK 1200
DAL+AAEHGD+ L+ +L++GGDP LHHM WSLLHLAAGCA GG + +YR RPEPD G+A CV LLAAGA+P ++G PL A G S LLLRAGA T ++ + +L PPK +PRSP V A L ++ + + V VE+RWR A G VERY ++
Sbjct: 51 DALEAAEHGDARALAAYLENGGDPAATSRLHHMGWSLLHLAAGCALAGGPGAAQAYRRRPEPDAPGGFARCVELLLAAGAEP---ATGDERPAPLAGAVLCGDAASARLLLRAGAAAP-------TEVEAPPGRHTAAEREAMRELLAAPPKLLPRSPLRVEAKLSEYVEGDARERV--VEVRWRPPPPAPGV----GPVERYVVR 240
BLAST of mRNA_H-elongata_contig11859.1433.1 vs. uniprot
Match: A0A7S2XYK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYK3_9STRA) HSP 1 Score: 124 bits (311), Expect = 3.140e-29 Identity = 62/127 (48.82%), Postives = 82/127 (64.57%), Query Frame = 1
Query: 1174 GDVERYYIKCWCRGKGKEVIMTKTSTEDMSRRDFCRNQIIERGIALRKNLCLPQSQTASTIVHGLQAGEIYSFTVSCVAEVEGALRHSPPSCMSKPLHISDSKEDHNWPLGGIVSMVKGKETPSPVG 1554
G+V +Y +KCW GK +VI T RRDFC+N ++ RGIALR+NL LP QTASTIVH L G YSFTVS +AE++G L SPPSCMS+ + I ++ W +G + +M+ TP+P G
Sbjct: 1 GEVIKYVVKCWGNGKMVDVIHATTGVGRGQRRDFCQNGVMNRGIALRQNLNLPPPQTASTIVHNLMPGLHYSFTVSAIAELDGVLCESPPSCMSRVVQIPVRDKEDRWMMGEVFNMMS---TPNPTG 124
BLAST of mRNA_H-elongata_contig11859.1433.1 vs. uniprot
Match: A0A7S4D9X9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9X9_HETAK) HSP 1 Score: 90.9 bits (224), Expect = 1.710e-17 Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 1261 SRRDFCRNQIIERGIALRKNLCLPQSQTASTIVHGLQAGEIYSFTVSCVAEVEGALRHSPPSCMSKPLHISDSKEDHNWPLGGIVSMVKGKETPSPV 1551
+RRDFC + +++RG+ALR+NL LP AS +VH L+ G YSFTVSCVA V G L SPPS +S+ + + ++++ W LG + K+ PV
Sbjct: 29 NRRDFCEDTVVDRGVALRRNLGLPPPPVASAVVHNLRPGAHYSFTVSCVAAVGGRLAESPPSVLSRVVAVPQAEKEDRWMLGMMAGGSGPKDKGGPV 125 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11859.1433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11859.1433.1 >prot_H-elongata_contig11859.1433.1 ID=prot_H-elongata_contig11859.1433.1|Name=mRNA_H-elongata_contig11859.1433.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=661bp MSINREAVDDLPTATPPAKQGNPVSTIRHRRRGSESAISFSMSRPSTTDVback to top mRNA from alignment at H-elongata_contig11859:2..7736- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11859.1433.1 ID=mRNA_H-elongata_contig11859.1433.1|Name=mRNA_H-elongata_contig11859.1433.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7735bp|location=Sequence derived from alignment at H-elongata_contig11859:2..7736- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11859:2..7736- >mRNA_H-elongata_contig11859.1433.1 ID=mRNA_H-elongata_contig11859.1433.1|Name=mRNA_H-elongata_contig11859.1433.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3966bp|location=Sequence derived from alignment at H-elongata_contig11859:2..7736- (Himanthalia elongata Himel1 dioecious)back to top |