mRNA_H-elongata_contig6711.14320.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6711.14320.1 vs. uniprot
Match: A0A6H5JPD9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPD9_9PHAE) HSP 1 Score: 404 bits (1038), Expect = 2.510e-129 Identity = 223/360 (61.94%), Postives = 276/360 (76.67%), Query Frame = 1
Query: 1 EQQRVDSSTPLIRSIWGGVRNNSGSMNDSSSDLPDNGPINDDLGRLDELGVSEGMIRAGSLEAEI-PAARR--------NVR---LNVMDDGVRGMNASRMGLLLLTMVNVPLVVAGVIVLTLNWGDDTVCKESHGVKWRWWALLSVIRLALLTPVIIVRWKLEGQREDQRNQAVDQLSSNLRNSLDIVGLVWFVIGHLWLLQNEHCENPSESPIYQLCLVYIIVMYIQICLPCILLMLLVPXXXXXXXXXIRVLGMLQGPQRMKGARKEEIEKLPTAKYGEMEDMEGESCAICLVDYAQEDELRILPCEHAFHKSCVDSWLLMNASCPNCRRRCFDPVEEDEGEEKITEPVPM-VGESL 1041
E QR STPLI + N MN +S + + G N GR+ G+ E + +AGS EAE PA RR NVR +++ DDGVRG++ASR+ LLLLT+VN+PL+ AGV++L L+W D VC H KW+WWALLSV+R+ L+TPV++VRW++EGQRE+ RNQA+D LSSN+RNSLDIVGLVWFVIGH+WLLQN+ C+NP +SPIYQLCLVYII+ YI ICLPCILLMLLVP XXXXXXXXIR++GMLQGPQR+KGAR++EIEKLP KY E++DME ++CAIC+VDY EDELR LPC HAFHK+CVDSWL +NASCPNCR RCF+ E+ EGEEKI + P VG++L
Sbjct: 85 EHQRE--STPLIS-----LTNRQAIMNVASINESNEG--NSGSGRI---GLGELIQQAGSDEAETQPATRRPVNRATNRNVRHVWMHIADDGVRGLSASRLSLLLLTLVNLPLIAAGVVILILHWQDTDVCDVDHRRKWKWWALLSVVRMMLITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLLQNQGCDNPRDSPIYQLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGPQRLKGARQDEIEKLPVVKYREVQDMEDDACAICIVDYEAEDELRKLPCRHAFHKTCVDSWLAVNASCPNCRARCFE--EDGEGEEKIADDAPAPVGDNL 430
BLAST of mRNA_H-elongata_contig6711.14320.1 vs. uniprot
Match: A0A7S2V5V5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5V5_9STRA) HSP 1 Score: 238 bits (607), Expect = 2.320e-67 Identity = 127/265 (47.92%), Postives = 178/265 (67.17%), Query Frame = 1
Query: 208 RNVRLNVMDDGVRGMNASRMGLLLLTMVNVPLVVAGVIVLTLNWGDDTVCKESHGVKWRWWALLSVIRLALLTPVIIVRWKLEGQR-EDQRNQAVDQLSSNLRNSLDIVGLVWFVIGHLWLL-QNEHCENPSESPIYQLCLVYIIVMYIQICLPCILLMLLVPXXXXXXXXXIRVLGMLQGPQRMKGARKEEIEKLPTAKYGE-MEDMEGESCAICLVDYAQEDELRILPCEHAFHKSCVDSWLLMNASCPNCRRRCFDPVEEDE 993
R VR+NV+ +R +N ++ +L+ +VN+P +VA + VL+L+WGD C +WRWWAL+S +R+A+ T V++V + R D R A L SNLRN +D +GL+WFV+G++WL Q+E C+NP SPIYQLC+ +++ YI ICLPC++ XXXXXXXXX RVL LQ P R KGA + I++L K+ + ++E E+C ICL D+ + D LR+LPC+H FH+SCVD WLL+NASCPNCR + EEDE
Sbjct: 79 RRVRMNVLGTSMREVNNRKLVVLVTLLVNIPQIVAAIAVLSLHWGDTFACDPERRQRWRWWALISTVRMAIYTVVMVVLYFFTLHRPRDSREVA---LLSNLRNGVDALGLIWFVVGNMWLFGQSESCDNPGSSPIYQLCVAMLLITYIHICLPCLIXXXXXXXXXXXXXXXXRVLSRLQDPMRGKGANQAAIDRLEAIKFQPGVTEVEEETCPICLTDFVEGDGLRLLPCDHCFHQSCVDEWLLLNASCPNCRSTILEEGEEDE 340
BLAST of mRNA_H-elongata_contig6711.14320.1 vs. uniprot
Match: A0A7S3XQH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQH4_HETAK) HSP 1 Score: 225 bits (573), Expect = 1.450e-63 Identity = 117/266 (43.98%), Postives = 175/266 (65.79%), Query Frame = 1
Query: 208 RNVRLNVMDDGVRGMNASRMGLLLLTMVNVPLVVAGVIVLTLNWGDDTVCKESHGVKWRWWALLSVIRLALLTPVIIVRWKLEGQREDQRNQAVDQLSSNLRNSLDIVGLVWFVIGHLWLL-QNEHCENPSESPIYQLCLVYIIVMYIQICLPCILLMLLVPXXXXXXXXXIRVLGMLQGPQRMKGARKEEIEKLPTAKYG-EMEDMEGESCAICLVDYAQEDELRILPCEHAFHKSCVDSWLLMNASCPNCRRRCFDPVEEDEGE 999
+ VR+NV+ +G+R +N R+ + L +VN+P +VA +VL+L+W DD VC H +W+WWA ++ RLA+ T +++ + + +R + + + SN RN +D +GL+WFV+G++WL Q E C+ SP+YQLC+ ++V Y+ ICLPC++ XXXXXXXXX RVL LQ P R KGA + I+KL KY ++ ++E +C ICL +Y +ELR LPC+H+FHK CVD WLL+NA+CPNCR D +E+E +
Sbjct: 12 QRVRMNVLQNGIREVNNRRLVVFLTLVVNLPQLVAAAVVLSLHWDDDAVCDADHRERWKWWAAVAAARLAVYTGLLVALYLVLLRRPRDAREVI--VLSNARNGVDALGLIWFVVGNMWLFGQTESCDGAGASPVYQLCVAMLLVTYLHICLPCLIXXXXXXXXXXXXXXXXRVLARLQDPMRGKGANQAAIDKLKIIKYRPDLPEIEEPTCPICLNEYENGEELRSLPCKHSFHKKCVDEWLLVNATCPNCRTTILDEEQEEEAK 275
BLAST of mRNA_H-elongata_contig6711.14320.1 vs. uniprot
Match: A0A7S2DZB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DZB6_9STRA) HSP 1 Score: 217 bits (553), Expect = 7.380e-60 Identity = 115/285 (40.35%), Postives = 180/285 (63.16%), Query Frame = 1
Query: 208 RNVRLNVMDDGVRGMNASRMGLLLLTMVNVPLVVAGVIVLTLNWGDDTVCKESHGVKWRWWALLSVIRLAL--LTPVIIVRWKLEGQREDQRNQAVDQLSSNLRNSLDIVGLVWFVIGHLWLLQNEH------CENPSESPIYQLCLVYIIVMYIQICLPCILLMLLVPXXXXXXXXXIRVLGMLQGPQRMKGARKEEIEKLPTAKYGEMEDMEGE-----SCAICLVDYAQEDELRILPCEHAFHKSCVDSWLLMNASCPNCRRRCFDPV---EEDEGEEKITE 1014
+NVR+NV++D +R +++SR+ + L + N P +VA ++VL+L+W DD+VC H +KWR WAL++ IR+ L +T +I+ ++D++ + + + NLRN LD GLVWF++G++WL C P++SPIY LCL ++ YI ICLPCI+ +L++P XXXXXI +L ++ P+ KGA + I+KLP K+ ++ D+E SC ICL+D+ +DE+RILPC+H FH C+ WL MN++CP+CR+ V +E E + E
Sbjct: 60 QNVRVNVLNDSLREVSSSRIAVSALILFNFPQIVAAIVVLSLHWPDDSVCDAEHRLKWRVWALIATIRMVLHMVTIFLIIGVSRMVTQQDRQTRLL-MILHNLRNLLDAAGLVWFLVGNMWLFGGSDEKVTTVCVRPTQSPIYNLCLAMVVFNYIHICLPCIVAILMIPVLCFXXXXXIHMLRWMRDPEEGKGASEAAIKKLPLVKFRDLSDVESTMSSQLSCPICLMDFGPDDEVRILPCKHYFHDQCIGEWLGMNSTCPSCRKNILKDVPSADEKSSNETVEE 343
BLAST of mRNA_H-elongata_contig6711.14320.1 vs. uniprot
Match: D7FY42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY42_ECTSI) HSP 1 Score: 192 bits (488), Expect = 7.370e-54 Identity = 84/120 (70.00%), Postives = 107/120 (89.17%), Query Frame = 1
Query: 220 LNVMDDGVRGMNASRMGLLLLTMVNVPLVVAGVIVLTLNWGDDTVCKESHGVKWRWWALLSVIRLALLTPVIIVRWKLEGQREDQRNQAVDQLSSNLRNSLDIVGLVWFVIGHLWLLQNE 579
+++ DDGVRGMNASR+GLLLLT+VN+PL+ AGV++LTL+W D VC H KW+WWALLSV+R+ L+TPV++VRW++EGQRE+ RNQA+D LSSN+RNSLDIVGLVWFVIGH+WLLQN+
Sbjct: 1 MHIADDGVRGMNASRLGLLLLTLVNLPLIAAGVVILTLHWQDTDVCDVEHRRKWKWWALLSVVRMMLITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLLQNQ 120
BLAST of mRNA_H-elongata_contig6711.14320.1 vs. uniprot
Match: A0A7S1U290_9STRA (Hypothetical protein n=5 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U290_9STRA) HSP 1 Score: 187 bits (475), Expect = 3.990e-49 Identity = 102/284 (35.92%), Postives = 163/284 (57.39%), Query Frame = 1
Query: 172 AGSLEAEIPAARRNVRLNVMDDGVRGMNASRMGLLLLTMVNVPLVVAGVIVLTLNWGDDTVCKESHGVKWRWWALLSVIRLALLTPVIIVRWKLEGQREDQRNQAV-------------DQLSSNLRNSLDIVGLVWFVIGHLWLLQNEHCE-NPSESPIYQLCLVYIIVMYIQICLPCILLMLLVPXXXXXXXXXIRVLGMLQGPQ---RMKGARKEEIEKLPTAKYG--EMEDMEGESCAICLVDYAQEDELRILPCEHAFHKSCVDSWLLMNASCPNCRRR 966
AG++ A A R +RLN ++G R + +SR LL+ V VP + AG+ VL NW D C H +KWRWWAL+SV+R+A V+ + L + + V D+L+ ++ +D++GLVWF+IG+LW+L ++ +S ++ LC+ +I+V YIQICLPC + + +P +R + +Q + +GA ++ I+++P K+ ++ + +CAICL +YA ED+LR+L C HAFHK C+D WL +N SCP+CR +
Sbjct: 15 AGAVGARQQRAARRLRLNAAEEGWRRILSSRTLLLITMGVYVPQIAAGIGVLATNWNDPNACDLEHLLKWRWWALVSVVRMAAFLLVMTMDHVLVDEERSPLREFVLRTGGEEQLILWHDKLARG-KHLVDVLGLVWFIIGNLWVLSDDDSSPGQGKSALFILCVFFIVVYYIQICLPCAVAVAAIPVLCFCLPCLLRFMVRMQDAEAHAERRGAEEDVIDRIPIRKFASSQLSSDDDATCAICLCEYADEDQLRVLHCGHAFHKDCLDPWLRLNGSCPSCRAK 297
BLAST of mRNA_H-elongata_contig6711.14320.1 vs. uniprot
Match: A0A835Z0W6_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W6_9STRA) HSP 1 Score: 184 bits (468), Expect = 8.000e-49 Identity = 104/256 (40.62%), Postives = 145/256 (56.64%), Query Frame = 1
Query: 271 LLLLTMVNVPLVVAGVIVLTLNWGDDTVCKESHGVKWRWWALLSVIRLALLTPVIIVRWKLEGQREDQRNQAVDQLSSNLRNSLDIVGLVWFVIGHLWLL--QNEHCENPSESPIYQLCLVYIIVMYIQICLPCILLMLLVPXXXXXXXXXIRVLGMLQGPQRMKGARKEEIEKLPTAKYGEMEDMEGE------------------------SCAICLVDYAQEDELRILPCEHAFHKSCVDSWLLMNASCPNCR 960
++L +VN+P ++ G VL +W DD C H +WR W++L + +A T + W+ R D V + +N+L+ +GL+WFV G+LWL Q+E C++ S S IYQLCLV I+V+Y+QICLPC+L +L+VP XXXXXX RVL P +GA + I+ LP KYG+ +C ICL DYA DELR LPC HA H++C+DSWL ++A+CPNCR
Sbjct: 1 MILTAIVNIPQIIGGAFVLAAHWRDDAACDAEHRARWRVWSVLELAIIAGHTAIRAATWRAGEARAD-----VSHALATAKNALEALGLIWFVAGNLWLFGGQDEGCQDASSSAIYQLCLVLIVVLYVQICLPCLLAVLMVPVLCXXXXXXXRVLSYFHDPMAGRGASQCAIDALPIVKYGDTSAXXXXXXXXXXXXXXXXXGALPTGAALETACPICLNDYAVGDELRQLPCAHALHRACLDSWLAISATCPNCR 251
BLAST of mRNA_H-elongata_contig6711.14320.1 vs. uniprot
Match: A0A8K1CPU5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPU5_PYTOL) HSP 1 Score: 181 bits (460), Expect = 2.230e-47 Identity = 109/297 (36.70%), Postives = 161/297 (54.21%), Query Frame = 1
Query: 109 GPINDDLGRLDELGVSEGMIRAGSLEAEIPAARRNVRLNVMDDGV---RGMNASRMGLLLLTMVNVPLVVAGVIVLTLNWGDDTVCKESHGVKWRWWALLSVIRLALLTPVIIVRWKLEGQRED---QRNQAVDQLSSNLRNSLDIVGLVWFVIGHLWLLQN-EHCENPSESPIYQLCLVYIIVMYIQICLPCILLMLLVPXXXXXXXXXIRVLGMLQGPQRMKGARKEEIEKLPTAKYGE-MEDMEGESCAICLVDYAQEDELRILPCEHAFHKSCVDSWLLMNASCPNCRRRCFD 975
GP+ + D E R + + + VRLNV++ V R SR+ + +LT+VNVP ++A ++L L W + T+C W LL I L+L + V + L G R + Q + SN++ LD+ GL WF++G++W++ + C++ S YQL + I++ Y +I LPCILL+ L+P IR+L LQ P R KGA KE I +L T K+ M E SC ICL DY + ELR+LPCEH FHK CVD WL++N++CP CR+ ++
Sbjct: 13 GPMASTMRPADRTRSPESSQRLLARDPTLNEEAHAVRLNVLNSSVQEARDARNSRLIMWVLTVVNVPQILAAAVILALKWTESTLCYRIQI-----WVLLHTIHLSLTLALEWVMYYLNGGRTNRVLQMRERYMSYLSNVKYGLDLAGLFWFLVGNMWVISDGARCDDGSTM--YQLAMWMIVISYAKIFLPCILLLALLPVICFCLPCVIRILSRLQDPMRGKGATKEAINRLSTRKFAAAMFPPEDSSCCICLNDYEPQQELRVLPCEHHFHKECVDEWLIVNSTCPTCRKSIYE 302
BLAST of mRNA_H-elongata_contig6711.14320.1 vs. uniprot
Match: A0A4D9DBP5_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBP5_9STRA) HSP 1 Score: 175 bits (444), Expect = 6.300e-44 Identity = 94/262 (35.88%), Postives = 147/262 (56.11%), Query Frame = 1
Query: 286 MVNVPLVVAGVIVLTLNWGDDTVCKESHGVKWRWWALLSVIRLALLTPVIIVRWKLEGQREDQRNQAVDQLSSNLRNSLDIVGLVWFVIGHLWLLQN--EHCENPSESPIYQLCLVYIIVMYIQICLPCILLMLLVPXXXXXXXXXIRVLGMLQGPQRMKGARKEEIEKLP-------------TAKYGEME----------------------DMEGESCAICLVDYAQEDELRILPCEHAFHKSCVDSWLLMNASCPNCR 960
+VN+P ++A V++L+ W DT C+ S KW+ +AL++ +R+ L + ++L G+ + + S+ RN LD GL+WFV+G++WL E C +P+ SP+Y LC+ ++ + Y Q+CLPC+++++++P XXXX IR+L +Q P R KGA I KLP TA G +E + SCA+C+ +YA ++++R+LPC H FH SCVD WL +NASCP CR
Sbjct: 75 VVNIPQIIAAVVILSKYW-HDTTCEPSETTKWKTYALIAALRMFLYVSSVSALYRLNGRMP--ATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFXXXXLIRILARIQDPMRGKGATPSMINKLPMMKSRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASCVDEWLKVNASCPTCR 333
BLAST of mRNA_H-elongata_contig6711.14320.1 vs. uniprot
Match: A0A662XM18_9STRA (RING-type domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XM18_9STRA) HSP 1 Score: 172 bits (437), Expect = 8.130e-44 Identity = 104/286 (36.36%), Postives = 152/286 (53.15%), Query Frame = 1
Query: 196 PAARRNVRLNVMDDGV---RGMNASRMGLLLLTMVNVPLVVAGVIVLTLNWGDDTVCKESHGVKWRWWALLSVIRLALLTPVIIVRWKLEGQREDQRNQAVDQLS---SNLRNSLDIVGLVWFVIGHLWLLQN-EHCENPSESPIYQLCLVYIIVMYIQICLPCILLMLLVPXXXXXXXXXIRVLGMLQGPQRMKGARKEEIEKLPTAKYG-EMEDMEGESCAICLVDYAQEDELRILPCEHAFHKSCVDSWLLMNASCPNCRRRCFDPVEEDEGEEKITEPVPMV 1029
P VRLNV++ V R SR+ + +++VNVP +VA +VL LNW +T+C W LL LA+ + + + L G R + + +Q S L+ LD+ GL WF++G++W++ + C++ S YQL L I++ Y +I LPC+LL+ L+P IR+L LQ P R KGA KE I++L + + M E C ICL DY LR+LPC+H FHK CVD WLL+N++CP CR+ FD + T M+
Sbjct: 76 PDEAHAVRLNVLNSSVQEARDARNSRLIMGAISLVNVPQIVAACVVLALNWKSETLCYRIQV-----WVLLHTAHLAITLALEWMLFYLNGARSNSALRLREQYMAPLSQLKYGLDLAGLFWFLVGNMWVISDGARCDDGSAM--YQLALWMIVISYAKIFLPCLLLLALLPVLCFCLPCVIRLLSRLQDPMRGKGANKEAIDRLESKTFTTNMFPPEDACCCICLNDYEPAQALRVLPCDHHFHKDCVDEWLLVNSTCPTCRKSIFDTASDGSSNAPATSEEDML 354 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6711.14320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6711.14320.1 >prot_H-elongata_contig6711.14320.1 ID=prot_H-elongata_contig6711.14320.1|Name=mRNA_H-elongata_contig6711.14320.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=324bp MNDSSSDLPDNGPINDDLGRLDELGVSEGMIRAGSLEAEIPAARRNVRLNback to top mRNA from alignment at H-elongata_contig6711:1169..6167- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6711.14320.1 ID=mRNA_H-elongata_contig6711.14320.1|Name=mRNA_H-elongata_contig6711.14320.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4999bp|location=Sequence derived from alignment at H-elongata_contig6711:1169..6167- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6711:1169..6167- >mRNA_H-elongata_contig6711.14320.1 ID=mRNA_H-elongata_contig6711.14320.1|Name=mRNA_H-elongata_contig6711.14320.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1944bp|location=Sequence derived from alignment at H-elongata_contig6711:1169..6167- (Himanthalia elongata Himel1 dioecious)back to top |