mRNA_H-elongata_contig66241.14222.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66241.14222.1
Unique NamemRNA_H-elongata_contig66241.14222.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66241.14222.1 vs. uniprot
Match: D7G273_ECTSI (Transmembrane protein 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G273_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 6.850e-23
Identity = 55/120 (45.83%), Postives = 76/120 (63.33%), Query Frame = 1 
Query:    1 QISHLQASCKDPRESTILIISDERCIGSDFWSTVCGPNELLVFRRYPFNLPSPENAPRVAYSPLGPRDTFPFIERSTQLQRLASSRNVFFNLQVSSGTSPRRDRVINITNIYAFEHPEAQ 360
            Q SHLQASC+DP E+T+L+ISDE C   +    +       V R +PFN P  +  PR A+ PLGPRDTFPF+  S   + LASSR++ FNLQV   TS RR  +++I + Y  ++P+ +
Sbjct:  165 QASHLQASCEDPTETTVLVISDETCELPELPPGLPPSCRANVVRVFPFNKPRTDGLPRNAFLPLGPRDTFPFV--SEDRRPLASSRSLLFNLQVRPDTSDRRAELVDIASQYESDNPDLE 282
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BLAST of mRNA_H-elongata_contig66241.14222.1 vs. uniprot
Match: D7G272_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G272_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.440e-22
Identity = 57/117 (48.72%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:    1 QISHLQASCKDPRESTILIISDERCIGSDFWSTVCGPNELLVFRRYPFNLPSPENAPRVAYSPLGPRDTFPFIERSTQLQRLASSRNVFFNLQVSSGTSPRRDRVINITNIYAFEHP 351
            Q SHLQASC+DP E+T+LIISDE C  S     +       V R +PFN       PR  Y PLGPRDTFPF+  S   + LASSR++FFNLQV   T  RR  +I   +IY   +P
Sbjct:  105 QASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRAFPFNQDRANEEPRRPYLPLGPRDTFPFV--SDDRRPLASSRSLFFNLQVRPETQGRRGELIETASIYQLSNP 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66241.14222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G273_ECTSI6.850e-2345.83Transmembrane protein 5 n=2 Tax=Ectocarpus TaxID=2... [more]
D7G272_ECTSI1.440e-2248.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66241contigH-elongata_contig66241:1374..2775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size372
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66241.14222.1prot_H-elongata_contig66241.14222.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66241 1374..2775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931051.4119823-CDS-H-elongata_contig66241:1373..14661622931051.4119823-CDS-H-elongata_contig66241:1373..1466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66241 1374..1466 -
1691679678.0837212-CDS-H-elongata_contig66241:1373..14661691679678.0837212-CDS-H-elongata_contig66241:1373..1466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66241 1374..1466 -
1622931051.4283154-CDS-H-elongata_contig66241:2005..21291622931051.4283154-CDS-H-elongata_contig66241:2005..2129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66241 2006..2129 -
1691679678.0914772-CDS-H-elongata_contig66241:2005..21291691679678.0914772-CDS-H-elongata_contig66241:2005..2129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66241 2006..2129 -
1622931051.440092-CDS-H-elongata_contig66241:2620..27751622931051.440092-CDS-H-elongata_contig66241:2620..2775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66241 2621..2775 -
1691679678.0999718-CDS-H-elongata_contig66241:2620..27751691679678.0999718-CDS-H-elongata_contig66241:2620..2775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66241 2621..2775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66241.14222.1

>prot_H-elongata_contig66241.14222.1 ID=prot_H-elongata_contig66241.14222.1|Name=mRNA_H-elongata_contig66241.14222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
QISHLQASCKDPRESTILIISDERCIGSDFWSTVCGPNELLVFRRYPFNL
PSPENAPRVAYSPLGPRDTFPFIERSTQLQRLASSRNVFFNLQVSSGTSP
RRDRVINITNIYAFEHPEAQVHLS
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mRNA from alignment at H-elongata_contig66241:1374..2775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66241.14222.1 ID=mRNA_H-elongata_contig66241.14222.1|Name=mRNA_H-elongata_contig66241.14222.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1402bp|location=Sequence derived from alignment at H-elongata_contig66241:1374..2775- (Himanthalia elongata Himel1 dioecious)
CAGATATCGCATCTCCAGGCATCGTGCAAAGACCCAAGGGAATCGACAAT
ACTTATTATTTCAGATGAGAGGTGCATTGGAAGCGACTTCTGGTCAACGG
TTTGTGGACCAAATGAGCTCTTAGTTTTTCGCCGTTATCCTTTTAACCTA
CCAAGGTGAGCTATCGCCCACCATCTTCTGTTTTTCGATATAACTGGCAG
GGATGGGGGCGGGGTCATGATTCGTATGGTGGGTGGTATTATTGTGCATG
GTGTTGACTTATTTTGACCTGATTTCTAAACTTTTGATGAGGCGCGCTTA
TCGAATCTGCTTTGATAGAGCGCAGAGAAACATGTTCGAGCGAAGTTTAG
TAGCGATACATGTTTATATTTTATAATGATATGTATGCACTGTAAAAAAT
TGTAGCGTCAACAATAAACCCGATTTTTATGAGCTTTTATTAAAATATAG
CAAATCGGCGTTTTTGCTGTTTGCAGCTTCTCTGAACATGTCTTGCGTTT
GAAGTAGCATATAATCCAGCGAGGCGCGTAACGGCGATGGATGCAGTTTT
CAAGTCTTGCATATAATTGTTCCATGATTTCGGCTTTCATCTCGGTTATA
TTAAATATCTACCGGTTCTCCATTGTGGCCGTTGCCGCTTTCGCAGTCCC
GAAAATGCACCTAGGGTTGCGTATAGTCCACTCGGCCCAAGGGATACATT
TCCATTCATCGAGCGATCAACGCAGCTCCAGCGCTTGGCTTCCTCCCGAA
ACGTATTTTTCAACCTACAGGTATCATGCATATGAGTACTAAGTGGTCGA
AATTTGCTTGTCAAGCCGTATACGCTACTACCACCATGGGCGACGAATAA
TAAATCGTCTTCGAAACACGTGGGGCAGATATTAACATGTTCGTGCCAGG
GGCGATCTAACTCTGTGCTGAAAATCTTTGTGGATTGCCCTTCCACGTTC
TTTGGAACGAGAGGGGGTTATATAGTTTAACATTTCCTGGAGATTTGAGA
GACATTTAGGAGGCTGCTGTTAAAAAAATAGTTTTTGAGTCTAAAACATT
TCGTGTATAACACGCGGACCTGCATTTTTTCTCGTTTTCTCCATTTCTTC
CTATTCTTGCCTTTTCAAAAGGGATCGACCGCTTACTTCTTTTTCATTGT
CTTGCTTTTGAACCATTTGAGAAAAAACAAGTATCACGAGCCTAAGGAGT
AATGTCTTTAAAAAATACAAGTGCATTATATTATCGACTTTGAGGAAAAT
TCGCCAGTACCGCCTTTTTTGGTGCTACTAACACGCATTGCATATTCAAC
TTGTCGCAGGTATCTTCCGGTACTTCACCACGAAGAGATCGTGTTATTAA
CATCACAAATATATATGCATTTGAGCATCCAGAGGCTCAGGTGCACCTGA
GC
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Coding sequence (CDS) from alignment at H-elongata_contig66241:1374..2775-

>mRNA_H-elongata_contig66241.14222.1 ID=mRNA_H-elongata_contig66241.14222.1|Name=mRNA_H-elongata_contig66241.14222.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig66241:1374..2775- (Himanthalia elongata Himel1 dioecious)
CAGATATCGCATCTCCAGGCATCGTGCAAAGACCCAAGGGAATCGACAAT
ACTTATTATTTCAGATGAGAGGTGCATTGGAAGCGACTTCTGGTCAACGG
TTTGTGGACCAAATGAGCTCTTAGTTTTTCGCCGTTATCCTTTTAACCTA
CCAAGCAGATATCGCATCTCCAGGCATCGTGCAAAGACCCAAGGGAATCG
ACAATACTTATTATTTCAGATGAGAGGTGCATTGGAAGCGACTTCTGGTC
AACGGTTTGTGGACCAAATGAGCTCTTAGTTTTTCGCCGTTATCCTTTTA
ACCTACCAAGTCCCGAAAATGCACCTAGGGTTGCGTATAGTCCACTCGGC
CCAAGGGATACATTTCCATTCATCGAGCGATCAACGCAGCTCCAGCGCTT
GGCTTCCTCCCGAAACGTATTTTTCAACCTACAGTCCCGAAAATGCACCT
AGGGTTGCGTATAGTCCACTCGGCCCAAGGGATACATTTCCATTCATCGA
GCGATCAACGCAGCTCCAGCGCTTGGCTTCCTCCCGAAACGTATTTTTCA
ACCTACAGGTATCTTCCGGTACTTCACCACGAAGAGATCGTGTTATTAAC
ATCACAAATATATATGCATTTGAGCATCCAGAGGCTCAGGTGCACCTGAG
CGTATCTTCCGGTACTTCACCACGAAGAGATCGTGTTATTAACATCACAA
ATATATATGCATTTGAGCATCCAGAGGCTCAGGTGCACCTGAGC
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