mRNA_H-elongata_contig66027.14193.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66027.14193.1
Unique NamemRNA_H-elongata_contig66027.14193.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66027.14193.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.020e-32
Identity = 64/96 (66.67%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 YRKVAMELDEVIVGVSLPNAVGSDRCSGKSDGDTPVSLEFVRPFKQARRREDDISIVTSGMRVRLEPREGKWVVVEAGLCFGGMAPTTVAAPRTEV 288
            YRKVAME DEVIV V LPNA         S    P + EF+RPFKQARRREDDISIVT G+R+ LEPR GKW+V++  +CFGGMAPTTVAAP TEV
Sbjct:  493 YRKVAMEEDEVIVAVFLPNAASKXXXXXXSP--PPSTFEFIRPFKQARRREDDISIVTGGIRLMLEPRGGKWIVMDTSMCFGGMAPTTVAAPLTEV 586          
BLAST of mRNA_H-elongata_contig66027.14193.1 vs. uniprot
Match: A0A6H5JRC2_9PHAE (Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC2_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.360e-32
Identity = 66/95 (69.47%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 YRKVAMELDEVIVGVSLPNAVGSDRCSGKSDGDTPVSLEFVRPFKQARRREDDISIVTSGMRVRLEPREGKWVVVEAGLCFGGMAPTTVAAPRTE 285
            YRKVAME DEVIV V LPNAV        S    P + EF+RPFKQARRREDDISIVT G+R+ LE R GKWVV EA +CFGGMAPTTVAAP TE
Sbjct:  494 YRKVAMEEDEVIVAVFLPNAVSEK--GNDSQSSPPSTFEFIRPFKQARRREDDISIVTGGIRLVLETRGGKWVVKEASMCFGGMAPTTVAAPLTE 586          
BLAST of mRNA_H-elongata_contig66027.14193.1 vs. uniprot
Match: W7TFQ7_9STRA (Xanthine dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFQ7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.690e-20
Identity = 56/101 (55.45%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 YRKVAMELDEVIVGVSLPNAVGSDRCSGKSDGDTPVS-LEFVRPFKQARRREDDISIVTSGMRVRLEP-----REGKWVVVEAGLCFGGMAPTTVAAPRTE 285
            YRKV M  DEVI  ++LP                P S  EFV P+KQARRREDDISIVT+ +RVRL P      EG+WV+ EAG  FGGMAPTTVAA +TE
Sbjct:  463 YRKVDMLEDEVIKTITLP---------------FPASRFEFVGPYKQARRREDDISIVTACLRVRLVPVASRSAEGRWVIEEAGFGFGGMAPTTVAAQKTE 548          
BLAST of mRNA_H-elongata_contig66027.14193.1 vs. uniprot
Match: R1EFE6_EMIHU (Uncharacterized protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EFE6_EMIHU)

HSP 1 Score: 92.8 bits (229), Expect = 6.810e-20
Identity = 52/98 (53.06%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    1 YRKVAMELDEVIVGVSLPNAVGSDRCSGKSDGDTPVSLEFVRPFKQARRREDDISIVTSGMRVRLEP--REGK--WVVVEAGLCFGGMAPTTVAAPRT 282
            YR+VA+E DEVIV   +P+                  LEFVRP+KQARRREDDISIV+  +RVRLEP  REG+  WVV +A L +GG+APT V A +T
Sbjct:  338 YRRVALEPDEVIVSFFVPHC---------------APLEFVRPYKQARRREDDISIVSCALRVRLEPAQREGRGVWVVSDAALAYGGLAPTAVLAAKT 420          
BLAST of mRNA_H-elongata_contig66027.14193.1 vs. uniprot
Match: V9TG24_9ERIC (Xanthinine dehydrogenase (Fragment) n=10 Tax=Monotropeae TaxID=217039 RepID=V9TG24_9ERIC)

HSP 1 Score: 83.2 bits (204), Expect = 2.310e-18
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 YRKVAMELDEVIVGVSLPNAVGSDRCSGKSDGDTPVSLEFVRPFKQARRREDDISIVTSGMRVRLEPREGKWVVVEAGLCFGGMAPTTVAAPRTE 285
            YRKV +  DE+++ + LP                    EFV+ FKQA RR+DDI+IV +GMRV LE + GKWVV +A + +GG+AP +++A +T+
Sbjct:   46 YRKVGLASDEILLSIFLP---------------WTRPFEFVKEFKQAHRRDDDIAIVNAGMRVFLEEKNGKWVVSDASIAYGGVAPLSISAAKTK 125          
BLAST of mRNA_H-elongata_contig66027.14193.1 vs. uniprot
Match: A0A7R9U4K0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4K0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.300e-18
Identity = 49/95 (51.58%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    1 YRKVAMELDEVIVGVSLPNAVGSDRCSGKSDGDTPVSLEFVRPFKQARRREDDISIVTSGMRVRLEPREGKWVVVEAGLCFGGMAPTTVAAPRTE 285
            YRK A+  DEVIV + +P    S+R             E   PFKQARRREDDISIVT G+R+   P EG+W V  A LCFGGMA  T AA +TE
Sbjct:  273 YRKTALRPDEVIVHIRVPL---SER------------YEIFMPFKQARRREDDISIVTGGIRICYAPEEGEWKVTRARLCFGGMAAVTKAAIKTE 352          
BLAST of mRNA_H-elongata_contig66027.14193.1 vs. uniprot
Match: M4C5A8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C5A8_HYAAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.260e-18
Identity = 50/97 (51.55%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 YRKVAMELDEVIVGVSLPNAVGSDRCSGKSDGDTPVSLEFVRPFKQARRREDDISIVTSGMRVRLE--PREGKWVVVEAGLCFGGMAPTTVAAPRTE 285
            YRKV M  DEVI GV +P                    E+V PFKQARRREDDISIVT+G+RVRLE   R G W + EA   +GGMAP T +A  TE
Sbjct:  460 YRKVGMVPDEVITGVYVPYT---------------KKWEYVLPFKQARRREDDISIVTAGIRVRLECSRRTGDWTIEEASAVYGGMAPITKSASETE 541          
BLAST of mRNA_H-elongata_contig66027.14193.1 vs. uniprot
Match: A0A2K9EUH7_9LAMI (Xanthine Dehydrogenase (Fragment) n=25 Tax=Orobanchaceae TaxID=91896 RepID=A0A2K9EUH7_9LAMI)

HSP 1 Score: 82.4 bits (202), Expect = 8.310e-18
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = 1
Query:    1 YRKVAMELDEVIVGVSLPNAVGSDRCSGKSDGDTPVSLEFVRPFKQARRREDDISIVTSGMRVRLEPREGKWVVVEAGLCFGGMAPTTVAAPRTE 285
            YRKV +  DE+++ V LP                    EFV  FKQA RR+DDI+IV +GMRVRLE R+GKWVV +A   +GG+AP ++ A  T 
Sbjct:   54 YRKVDLASDEILISVFLP---------------WNSKYEFVTEFKQAHRRDDDIAIVNAGMRVRLEERDGKWVVGDAMFVYGGVAPYSICANETR 133          
BLAST of mRNA_H-elongata_contig66027.14193.1 vs. uniprot
Match: A0A3R7FYU6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FYU6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.350e-17
Identity = 49/97 (50.52%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 YRKVAMELDEVIVGVSLPNAVGSDRCSGKSDGDTPVSLEFVRPFKQARRREDDISIVTSGMRVRLE--PREGKWVVVEAGLCFGGMAPTTVAAPRTE 285
            YRKV ME DEVI  V +P                    E++ PFKQARRREDDISIVT+G+RV LE  P+ G WV+  A   +GGMAP T AA  TE
Sbjct:  419 YRKVGMEKDEVITSVYVPYT---------------KEYEYMLPFKQARRREDDISIVTAGIRVLLESSPQTGVWVISNASAVYGGMAPITKAATATE 500          
BLAST of mRNA_H-elongata_contig66027.14193.1 vs. uniprot
Match: A0A1E7F586_9STRA (Xanthine dehydrogenase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F586_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.520e-17
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 1
Query:  112 LEFVRPFKQARRREDDISIVTSGMRVRLEPREGKWVVVEAGLCFGGMAPTTVAAPRT 282
             E+V+PFKQARRREDDISIVTSGMR++L P++GK+++  A L FGGMAP TV A +T
Sbjct:  457 FEYVKPFKQARRREDDISIVTSGMRIKLVPKDGKFIIEHAALAFGGMAPKTVMAVKT 513          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66027.14193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4V3_ECTSI1.020e-3266.67Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=28... [more]
A0A6H5JRC2_9PHAE1.360e-3269.47Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP... [more]
W7TFQ7_9STRA2.690e-2055.45Xanthine dehydrogenase n=2 Tax=Monodopsidaceae Tax... [more]
R1EFE6_EMIHU6.810e-2053.06Uncharacterized protein n=3 Tax=Emiliania huxleyi ... [more]
V9TG24_9ERIC2.310e-1842.11Xanthinine dehydrogenase (Fragment) n=10 Tax=Monot... [more]
A0A7R9U4K0_9STRA5.300e-1851.58Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
M4C5A8_HYAAE7.260e-1851.55Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A2K9EUH7_9LAMI8.310e-1845.26Xanthine Dehydrogenase (Fragment) n=25 Tax=Orobanc... [more]
A0A3R7FYU6_9STRA1.350e-1750.52Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A1E7F586_9STRA2.520e-1766.67Xanthine dehydrogenase n=1 Tax=Fragilariopsis cyli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66027contigH-elongata_contig66027:2709..3002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue6.2e-26
Seed eggNOG ortholog2880.D7G4V2
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
EC1.17.1.4,1.17.3.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size279
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931049.0991282-CDS-H-elongata_contig66027:2708..29871622931049.0991282-CDS-H-elongata_contig66027:2708..2987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66027 2709..2987 -
1691679677.0653362-CDS-H-elongata_contig66027:2708..29871691679677.0653362-CDS-H-elongata_contig66027:2708..2987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66027 2709..2987 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931049.1147-UTR-H-elongata_contig66027:2987..30021622931049.1147-UTR-H-elongata_contig66027:2987..3002Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66027 2988..3002 -
1691679677.078938-UTR-H-elongata_contig66027:2987..30021691679677.078938-UTR-H-elongata_contig66027:2987..3002Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66027 2988..3002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66027.14193.1prot_H-elongata_contig66027.14193.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66027 2709..2987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66027.14193.1

>prot_H-elongata_contig66027.14193.1 ID=prot_H-elongata_contig66027.14193.1|Name=mRNA_H-elongata_contig66027.14193.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MELDEVIVGVSLPNAVGSDRCSGKSDGDTPVSLEFVRPFKQARRREDDIS
IVTSGMRVRLEPREGKWVVVEAGLCFGGMAPTTVAAPRTEVG*
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mRNA from alignment at H-elongata_contig66027:2709..3002-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66027.14193.1 ID=mRNA_H-elongata_contig66027.14193.1|Name=mRNA_H-elongata_contig66027.14193.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig66027:2709..3002- (Himanthalia elongata Himel1 dioecious)
TACCGCAAGGTCGCGATGGAGCTAGACGAGGTGATCGTGGGCGTAAGCCT GCCTAATGCCGTCGGCAGCGATAGATGCAGTGGCAAGTCAGACGGCGACA CTCCGGTGTCTCTGGAGTTCGTGCGCCCCTTCAAGCAGGCCCGCCGCAGG GAGGACGACATCTCGATCGTCACGTCGGGCATGCGCGTTAGGCTCGAGCC CCGGGAAGGGAAGTGGGTGGTGGTGGAGGCGGGACTGTGCTTCGGGGGCA TGGCCCCCACGACCGTCGCCGCTCCCAGAACGGAGGTGGGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig66027:2709..3002-

>mRNA_H-elongata_contig66027.14193.1 ID=mRNA_H-elongata_contig66027.14193.1|Name=mRNA_H-elongata_contig66027.14193.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig66027:2709..3002- (Himanthalia elongata Himel1 dioecious)
ATGGAGCTAGACGAGGTGATCGTGGGCGTAAGCCTGCCTAATGCCGTCGG
CAGCGATAGATGCAGTGGCAAGTCAGACGGCGACACTCCGGTGTCTCTGG
AGTTCGTGCGCCCCTTCAAGCAGGCCCGCCGCAGGGAGGACGACATCTCG
ATCGTCACGTCGGGCATGCGCGTTAGGCTCGAGCCCCGGGAAGGGAAGTG
GGTGGTGGTGGAGGCGGGACTGTGCTTCGGGGGCATGGCCCCCACGACCG
TCGCCGCTCCCAGAACGGAGGTGGGTTAGATGGAGCTAGACGAGGTGATC
GTGGGCGTAAGCCTGCCTAATGCCGTCGGCAGCGATAGATGCAGTGGCAA
GTCAGACGGCGACACTCCGGTGTCTCTGGAGTTCGTGCGCCCCTTCAAGC
AGGCCCGCCGCAGGGAGGACGACATCTCGATCGTCACGTCGGGCATGCGC
GTTAGGCTCGAGCCCCGGGAAGGGAAGTGGGTGGTGGTGGAGGCGGGACT
GTGCTTCGGGGGCATGGCCCCCACGACCGTCGCCGCTCCCAGAACGGAGG
TGGGTTAG
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