mRNA_H-elongata_contig65447.14126.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65447.14126.1
Unique NamemRNA_H-elongata_contig65447.14126.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 197 bits (500), Expect = 8.660e-54
Identity = 99/270 (36.67%), Postives = 157/270 (58.15%), Query Frame = 1
Query:    1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRKQVGLLRKAMYGL--------------LEAKGFQRSQADPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDVTKTSII 768
            EP ++ EAQAS EWP+W++A+  E D     G W++ + PK +  +G +  F+RK +K+G++ KYK RLVAQG+ QI G+ + E+ +P     SIR +L++     WE+ Q++V  AYL  D++EEIY   PE + D   ++  LRK +YGL              L   G++R +ADPCV+ W      + +I V+VDDLL+ + + +  E+  RDL   F + DLGE    +G  I RDR AG ++  Q  YI+++ +R+ +   + +
Sbjct:  906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAV 1175          
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A401H727_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H727_9APHY)

HSP 1 Score: 186 bits (473), Expect = 3.090e-50
Identity = 95/263 (36.12%), Postives = 151/263 (57.41%), Query Frame = 1
Query:   22 AQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRKQVGLLRKAMYGLLEAK--------------GFQRSQADPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDVTKTSII 768
            AQAS EW +W++A+  E D     G W++ + PK +  +G +  F+RK +K+ ++ KYK RLVAQG+ QI G+ + E+ +P     SIR +L++     WE+ Q++V  AYL  D++EEIY   PE + D   ++  LRK +YGL ++               G++R +ADPCV+ W      + +I V+VDDLL+ + + +  E+  RDL   F + DLGE    +G  I RDR AGTL+  Q  YI+++ +R+     + +
Sbjct:  718 AQASPEWSEWEKAVKAEYDQLQGMGTWELQDLPKYRNAVGCKWVFQRKTNKESQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGCKWNRKLHRELMELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGTLQISQQHYIESILKRYQFENANAV 980          
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 181 bits (458), Expect = 3.640e-48
Identity = 103/271 (38.01%), Postives = 149/271 (54.98%), Query Frame = 1
Query:    4 PATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRKQVGLLRKAMYGL--------------LEAKGFQRSQADPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDVTKTSIISS 774
            P ++ EA+AS EW +WK+A+  EM      G +   + P G+  +G +  F +K D+DG I +YK RLVAQG+ QI G+ Y E+ +P     S+R  L + A    E+ Q++V  AYL  ++EEEIY   PE Y D   +V  LRK +YGL              L + GF + +AD CV++ I  G +  +I V+VDDLL+ S T  D  +   +L + F +KDLGE    +G  I RDR  GT+   Q QYI+ V  RF +     +S+
Sbjct:  879 PRSVAEAEASPEWAEWKKAMDEEMSVIKEMGTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRM-TIITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGMQNARPVST 1148          
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 177 bits (448), Expect = 7.970e-47
Identity = 101/268 (37.69%), Postives = 155/268 (57.84%), Query Frame = 1
Query:    1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRKQ--VGLLRKAMYGL--------------LEAKGFQRSQADPCVFRWILHGAVIVVILVY--VDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDV 750
            +PA++ EA  S+EWP+WK AIA+EM    + G + +VE PK   ++G++  F+ K + +G IE YK RLVAQGF Q+ GI + E+ +P    ASIR++L++ A + WE+ Q++V  AYL  D+EEEIY   P    +  K+  V  L++ +YGL              L + G  RS+ D CVF W+ +   ++++L+   VDD  +A  TK       R++ + F + DLGE  + LG  + RDR+A TL   Q  YI  +  RF++
Sbjct:  921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVF-WLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNL 1186          
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 172 bits (437), Expect = 2.840e-46
Identity = 98/268 (36.57%), Postives = 153/268 (57.09%), Query Frame = 1
Query:    1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRKQ--VGLLRKAMYGL--------------LEAKGFQRSQADPCVFRWILHGAVIVVILVY--VDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDV 750
            +PA++ EA  S+EWP+WK AI +EM    + G + +VE PK   ++G++  F+ K + +  IE YK RLVAQGF Q+ GI + E+ +P    ASI ++L++ A + WE+ Q++V  AYL  D+EEEIY + P    +  K+  V  L++ +YGL              L + G  RS+ D CVF W+ +   ++++L+   VDD  +A  TK       R++ + F + DLGE  + LG  + RDR+  TL   QH YI  +  RF++
Sbjct:  111 DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVF-WLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNL 376          
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: Q9FFM0_ARATH (Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FFM0_ARATH)

HSP 1 Score: 173 bits (439), Expect = 1.260e-45
Identity = 103/273 (37.73%), Postives = 152/273 (55.68%), Query Frame = 1
Query:    1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIE--KYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRD--SRKQVGLLRKAMYGLLEA--------------KGFQRSQADPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDVTKTSI 765
            EP T  EA  S E  +WK+A   EMD       W V+++P+GK V+G +  FKRK    G +E  +YK RLVA+GF Q +GI Y+E  SP     SIR +LS++  F  E+ QL+V  A+L  +++E I    PE Y D  S ++V LL+K++YGL ++               G+QRS+ +PCV+   L+    + +L+YVDD+L+AS  K   ++    L   F +KDLG A   LG  ITR+R  G L   Q +Y+  V   F + ++ +
Sbjct:  822 EPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPG-VEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARKILGMEITRNREQGILDLSQSEYVAGVLRAFGMDQSKV 1093          
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: UPI00142E31C7 (uncharacterized protein LOC103832254 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E31C7)

HSP 1 Score: 173 bits (438), Expect = 1.750e-45
Identity = 103/274 (37.59%), Postives = 157/274 (57.30%), Query Frame = 1
Query:    1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEK--YKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRK--QVGLLRKAMYGL--------------LEAKGFQRSQADPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDVTKTSII 768
            EP +  EA+ S  W  W   +  EMD       W++VE+P+ K ++G++  FK K    G +EK  YK RLVA+GF Q++GI Y E  +P     SIR++LS++A +  ++ QL+V  A+L   ++EEIY   PE + +  K  QV LL K++YGL              ++ +GF+RS  DPCV+      + +V +L+YVDD+L+AS   ++ ++    L   F +KDLG AS  LG  I RDR  GTLK  Q +Y+Q V E F++ ++  +
Sbjct:  822 EPKSYLEARRSKSWKLWNEGMQEEMDSLEKNQTWKLVEKPEKKKIIGSKWVFKLKEGIPG-VEKPRYKARLVAKGFSQVEGIDYTEVFAPVVKHVSIRIMLSLVANYDLDLEQLDVKTAFLYGTLDEEIYMAQPEGFVEEGKEDQVCLLLKSLYGLKQSPRQWNRRFDSFMKQQGFERSAYDPCVYMKGSDSSHMVYLLIYVDDMLIASKDSKEIKRIKDSLKREFEMKDLGAASRILGMDIIRDRKKGTLKLSQGKYLQKVLETFNMAESKAV 1094          
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A6A4D1J5_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4D1J5_9STRA)

HSP 1 Score: 171 bits (433), Expect = 2.960e-45
Identity = 100/263 (38.02%), Postives = 152/263 (57.79%), Query Frame = 1
Query:    1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRK-QVGLLRKAMYGL--------LEAKGFQRSQA------DPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERF 744
            EP T+ EA+ S +W +WK+AI  E++   A G + VV  P G  V+GT + F+ K   DGR+++ + R+ AQGF++I  I + ++ +P     SIR+ L+     G  +RQ +V  A++++++ E IY + P+ + +    QV LL KA+YGL        +E   F RSQ       DPCV +   H A ++V+LVYVDD+L+    + D  + +  L   + IKDLGE S++LG H+TRD   G +K DQ QY   V ERF
Sbjct:  321 EPLTLEEARRSPQWTEWKKAILAEIEALRANGTFTVVTPPAGAHVIGTTMNFRVKRHADGRVDRLRARICAQGFQEIYMIDFVDTYAPVARLISIRVFLAECNQSGIHIRQGDVPTAFVKANLREVIYVKQPKGFEEGEPGQVWLLHKALYGLKQAGREWYIELDEFLRSQGLVPTREDPCVHK---HPAKLLVVLVYVDDILIGYKNEEDMRELMNALEVKYGIKDLGELSWFLGMHVTRDFERGVMKIDQEQYAIEVCERF 580          
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 168 bits (425), Expect = 5.030e-45
Identity = 103/268 (38.43%), Postives = 144/268 (53.73%), Query Frame = 1
Query:    1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRD--SRKQVGLLRKAMYGLLEA--------------KGFQRSQADPCVFRWILHG--AVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDV 750
            EP T+ EA+AS EWPQW+ AI  E+      G W++ E+P G  V+G+   FK K D  G I KYK RLVAQGF QI G+ Y ++ +P    +SIR++ ++ A F WE+ Q++V  AYL  D+EEEI+ + P  +      ++V  L K +YGL +A               GF RS  D  VF    HG    I ++ V VDDL +A+ +  +       L   F + DLGE  + LG  I RDR   T+   Q  YI T+  RF++
Sbjct:   29 EPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVF--FRHGPNGEIAIVAVSVDDLAIAANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNL 294          
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A2N9IT45_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IT45_FAGSY)

HSP 1 Score: 169 bits (428), Expect = 8.500e-45
Identity = 98/264 (37.12%), Postives = 152/264 (57.58%), Query Frame = 1
Query:    1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAY--RDSRKQVGLLRKAMYGLLEAK--------------GFQRSQADPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERF 744
            +P+T  +A    +  +W  A+  E D     GVW++V+R +G  V+G +  FKRK D  G++EK+K RLVA+G+ Q  G+ +EE+ SP     SIR +LS++A F +E+ Q++V  A+L  D+EE++Y E PE +  +    +V  L K++YGL +A               GF ++ ++PCV+   +H  V+++ L YVDD+L+A       ++  + L   F +KDLGEASY LG  I RDR    L   Q  YI T+ E+F
Sbjct:  330 DPSTYSQAIKDFDSKKWISAMNEEFDSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSIRAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVILTL-YVDDILLAGNDVDMLDEVKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKF 592          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GYH9_9APHY8.660e-5436.67Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A401H727_9APHY3.090e-5036.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A284QR88_ARMOS3.640e-4838.01Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A401GN13_9APHY7.970e-4737.69Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A401GP19_9APHY2.840e-4636.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q9FFM0_ARATH1.260e-4537.73Copia-like retrotransposable element n=1 Tax=Arabi... [more]
UPI00142E31C71.750e-4537.59uncharacterized protein LOC103832254 n=1 Tax=Brass... [more]
A0A6A4D1J5_9STRA2.960e-4538.02Integrase catalytic domain-containing protein n=3 ... [more]
A0A4Y9ZVS1_9AGAM5.030e-4538.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9IT45_FAGSY8.500e-4537.12Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65447contigH-elongata_contig65447:97..912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score161.0
Seed ortholog evalue7.3e-37
Seed eggNOG ortholog37682.EMT12132
Preferred nameEIF3A
KEGG koko:K03254
KEGG Pathwayko03013,map03013
GOsGO:0001732,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005852,GO:0005886,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
EggNOG OGs37Q3Y@33090,3GCXB@35493,3IB7X@38820,3KQFG@4447,COG0513@1,COG2801@1,KOG0017@2759,KOG0342@2759,KOG2072@1,KOG2072@2759
COG Functional cat.J
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Hectar predicted targeting categoryother localisation
Exons2
Model size774
Cds size762
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65447.14126.1prot_H-elongata_contig65447.14126.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65447 97..900 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931041.0696895-CDS-H-elongata_contig65447:96..4141622931041.0696895-CDS-H-elongata_contig65447:96..414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65447 97..414 -
1691679673.6120603-CDS-H-elongata_contig65447:96..4141691679673.6120603-CDS-H-elongata_contig65447:96..414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65447 97..414 -
1622931041.088502-CDS-H-elongata_contig65447:456..9001622931041.088502-CDS-H-elongata_contig65447:456..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65447 457..900 -
1691679673.6221695-CDS-H-elongata_contig65447:456..9001691679673.6221695-CDS-H-elongata_contig65447:456..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65447 457..900 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931041.1079278-UTR-H-elongata_contig65447:900..9121622931041.1079278-UTR-H-elongata_contig65447:900..912Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65447 901..912 -
1691679673.6299596-UTR-H-elongata_contig65447:900..9121691679673.6299596-UTR-H-elongata_contig65447:900..912Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65447 901..912 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65447.14126.1

>prot_H-elongata_contig65447.14126.1 ID=prot_H-elongata_contig65447.14126.1|Name=mRNA_H-elongata_contig65447.14126.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
MGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKR
KIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAA
FGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRKQVGLLRKAMYGLLE
AKGFQRSQADPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDL
GSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDVTKTS
IISS
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mRNA from alignment at H-elongata_contig65447:97..912-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65447.14126.1 ID=mRNA_H-elongata_contig65447.14126.1|Name=mRNA_H-elongata_contig65447.14126.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=816bp|location=Sequence derived from alignment at H-elongata_contig65447:97..912- (Himanthalia elongata Himel1 dioecious)
GAGCCGGCAACCATGGGCGAGGCGCAAGCGTCGTCAGAGTGGCCGCAATG GAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAACTGCTCCAGGCGTGT GGCAGGTGGTGGAACGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTA GCTTTCAAGCGCAAAATCGACAAGGATGGAAGGATCGAGAAGTATAAATG TCGCCTCGTGGCGCAGGGTTTCAGGCAGATCAAAGGCATACACTACGAGG AGTCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGGATGGTACTCAGC ATGATCGCGGCTTTCGGCTGGGAGGTGCGGCAGCTAAACGTCGACATGGC CTACCTGGAGTCCGATGTGGAGGAGGAGATCTACGCTGAGCTCCCGGAGG CATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAGGAAGGCAATGTAC GGACTTGTCCACGCCGGGCTGCTGTAGTAAAAACCGTTCGGGATCGAGCT CGAGGCGAAGGGTTTCCAGAGATCTCAAGCCGATCCATGCGTGTTCCGGT GGATTCTCCACGGGGCAGTGATAGTTGTCATCTTGGTCTACGTTGACGAC CTGCTGGTTGCTAGTGCAACGAAGCGTGACGAGGAGCAAGCGGTAAGGGA CCTGGGCTCCTGTTTCCCCATCAAGGATCTGGGGGAGGCTTCATATTACC TGGGATACCACATCACGCGGGACCGGAACGCCGGAACACTGAAGTTCGAC CAGCATCAGTACATACAGACTGTGGCGGAACGTTTTGACGTGACGAAGAC CAGCATCATCTCGTCT
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Coding sequence (CDS) from alignment at H-elongata_contig65447:97..912-

>mRNA_H-elongata_contig65447.14126.1 ID=mRNA_H-elongata_contig65447.14126.1|Name=mRNA_H-elongata_contig65447.14126.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig65447:97..912- (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGCGCAAGCGTCGTCAGAGTGGCCGCAATGGAAAAGGGCGAT
CGCGCGCGAGATGGATGGGCAAACTGCTCCAGGCGTGTGGCAGGTGGTGG
AACGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGCTTTCAAGCGC
AAAATCGACAAGGATGGAAGGATCGAGAAGTATAAATGTCGCCTCGTGGC
GCAGGGTTTCAGGCAGATCAAAGGCATACACTACGAGGAGTCCTCCTCTC
CGACTCCTGCGCAGGCCAGCATTAGGATGGTACTCAGCATGATCGCGGCT
TTCGGCTGGGAGGTGCGGCAGCTAAACGTCGACATGGCCTACCTGGAGTC
CGATGTGGAGGAGGAGATCTACGCTGAGCTCCCGGAGGCATACCGTGACT
CCAGGAAGCAAGTCGGCCTACTAAGGAAGGCAATGTACGGACTTATGGGC
GAGGCGCAAGCGTCGTCAGAGTGGCCGCAATGGAAAAGGGCGATCGCGCG
CGAGATGGATGGGCAAACTGCTCCAGGCGTGTGGCAGGTGGTGGAACGCC
CAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGCTTTCAAGCGCAAAATC
GACAAGGATGGAAGGATCGAGAAGTATAAATGTCGCCTCGTGGCGCAGGG
TTTCAGGCAGATCAAAGGCATACACTACGAGGAGTCCTCCTCTCCGACTC
CTGCGCAGGCCAGCATTAGGATGGTACTCAGCATGATCGCGGCTTTCGGC
TGGGAGGTGCGGCAGCTAAACGTCGACATGGCCTACCTGGAGTCCGATGT
GGAGGAGGAGATCTACGCTGAGCTCCCGGAGGCATACCGTGACTCCAGGA
AGCAAGTCGGCCTACTAAGGAAGGCAATGTACGGACTTCTCGAGGCGAAG
GGTTTCCAGAGATCTCAAGCCGATCCATGCGTGTTCCGGTGGATTCTCCA
CGGGGCAGTGATAGTTGTCATCTTGGTCTACGTTGACGACCTGCTGGTTG
CTAGTGCAACGAAGCGTGACGAGGAGCAAGCGGTAAGGGACCTGGGCTCC
TGTTTCCCCATCAAGGATCTGGGGGAGGCTTCATATTACCTGGGATACCA
CATCACGCGGGACCGGAACGCCGGAACACTGAAGTTCGACCAGCATCAGT
ACATACAGACTGTGGCGGAACGTTTTGACGTGACGAAGACCAGCATCATC
TCGTCTCTCGAGGCGAAGGGTTTCCAGAGATCTCAAGCCGATCCATGCGT
GTTCCGGTGGATTCTCCACGGGGCAGTGATAGTTGTCATCTTGGTCTACG
TTGACGACCTGCTGGTTGCTAGTGCAACGAAGCGTGACGAGGAGCAAGCG
GTAAGGGACCTGGGCTCCTGTTTCCCCATCAAGGATCTGGGGGAGGCTTC
ATATTACCTGGGATACCACATCACGCGGGACCGGAACGCCGGAACACTGA
AGTTCGACCAGCATCAGTACATACAGACTGTGGCGGAACGTTTTGACGTG
ACGAAGACCAGCATCATCTCGTCT
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