mRNA_H-elongata_contig65447.14126.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY) HSP 1 Score: 197 bits (500), Expect = 8.660e-54 Identity = 99/270 (36.67%), Postives = 157/270 (58.15%), Query Frame = 1
Query: 1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRKQVGLLRKAMYGL--------------LEAKGFQRSQADPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDVTKTSII 768
EP ++ EAQAS EWP+W++A+ E D G W++ + PK + +G + F+RK +K+G++ KYK RLVAQG+ QI G+ + E+ +P SIR +L++ WE+ Q++V AYL D++EEIY PE + D ++ LRK +YGL L G++R +ADPCV+ W + +I V+VDDLL+ + + + E+ RDL F + DLGE +G I RDR AG ++ Q YI+++ +R+ + + +
Sbjct: 906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAV 1175
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A401H727_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H727_9APHY) HSP 1 Score: 186 bits (473), Expect = 3.090e-50 Identity = 95/263 (36.12%), Postives = 151/263 (57.41%), Query Frame = 1
Query: 22 AQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRKQVGLLRKAMYGLLEAK--------------GFQRSQADPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDVTKTSII 768
AQAS EW +W++A+ E D G W++ + PK + +G + F+RK +K+ ++ KYK RLVAQG+ QI G+ + E+ +P SIR +L++ WE+ Q++V AYL D++EEIY PE + D ++ LRK +YGL ++ G++R +ADPCV+ W + +I V+VDDLL+ + + + E+ RDL F + DLGE +G I RDR AGTL+ Q YI+++ +R+ + +
Sbjct: 718 AQASPEWSEWEKAVKAEYDQLQGMGTWELQDLPKYRNAVGCKWVFQRKTNKESQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGCKWNRKLHRELMELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGTLQISQQHYIESILKRYQFENANAV 980
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS) HSP 1 Score: 181 bits (458), Expect = 3.640e-48 Identity = 103/271 (38.01%), Postives = 149/271 (54.98%), Query Frame = 1
Query: 4 PATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRKQVGLLRKAMYGL--------------LEAKGFQRSQADPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDVTKTSIISS 774
P ++ EA+AS EW +WK+A+ EM G + + P G+ +G + F +K D+DG I +YK RLVAQG+ QI G+ Y E+ +P S+R L + A E+ Q++V AYL ++EEEIY PE Y D +V LRK +YGL L + GF + +AD CV++ I G + +I V+VDDLL+ S T D + +L + F +KDLGE +G I RDR GT+ Q QYI+ V RF + +S+
Sbjct: 879 PRSVAEAEASPEWAEWKKAMDEEMSVIKEMGTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRM-TIITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGMQNARPVST 1148
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY) HSP 1 Score: 177 bits (448), Expect = 7.970e-47 Identity = 101/268 (37.69%), Postives = 155/268 (57.84%), Query Frame = 1
Query: 1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRKQ--VGLLRKAMYGL--------------LEAKGFQRSQADPCVFRWILHGAVIVVILVY--VDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDV 750
+PA++ EA S+EWP+WK AIA+EM + G + +VE PK ++G++ F+ K + +G IE YK RLVAQGF Q+ GI + E+ +P ASIR++L++ A + WE+ Q++V AYL D+EEEIY P + K+ V L++ +YGL L + G RS+ D CVF W+ + ++++L+ VDD +A TK R++ + F + DLGE + LG + RDR+A TL Q YI + RF++
Sbjct: 921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVF-WLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNL 1186
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY) HSP 1 Score: 172 bits (437), Expect = 2.840e-46 Identity = 98/268 (36.57%), Postives = 153/268 (57.09%), Query Frame = 1
Query: 1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRKQ--VGLLRKAMYGL--------------LEAKGFQRSQADPCVFRWILHGAVIVVILVY--VDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDV 750
+PA++ EA S+EWP+WK AI +EM + G + +VE PK ++G++ F+ K + + IE YK RLVAQGF Q+ GI + E+ +P ASI ++L++ A + WE+ Q++V AYL D+EEEIY + P + K+ V L++ +YGL L + G RS+ D CVF W+ + ++++L+ VDD +A TK R++ + F + DLGE + LG + RDR+ TL QH YI + RF++
Sbjct: 111 DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVF-WLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNL 376
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: Q9FFM0_ARATH (Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FFM0_ARATH) HSP 1 Score: 173 bits (439), Expect = 1.260e-45 Identity = 103/273 (37.73%), Postives = 152/273 (55.68%), Query Frame = 1
Query: 1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIE--KYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRD--SRKQVGLLRKAMYGLLEA--------------KGFQRSQADPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDVTKTSI 765
EP T EA S E +WK+A EMD W V+++P+GK V+G + FKRK G +E +YK RLVA+GF Q +GI Y+E SP SIR +LS++ F E+ QL+V A+L +++E I PE Y D S ++V LL+K++YGL ++ G+QRS+ +PCV+ L+ + +L+YVDD+L+AS K ++ L F +KDLG A LG ITR+R G L Q +Y+ V F + ++ +
Sbjct: 822 EPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPG-VEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARKILGMEITRNREQGILDLSQSEYVAGVLRAFGMDQSKV 1093
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: UPI00142E31C7 (uncharacterized protein LOC103832254 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E31C7) HSP 1 Score: 173 bits (438), Expect = 1.750e-45 Identity = 103/274 (37.59%), Postives = 157/274 (57.30%), Query Frame = 1
Query: 1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEK--YKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRK--QVGLLRKAMYGL--------------LEAKGFQRSQADPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDVTKTSII 768
EP + EA+ S W W + EMD W++VE+P+ K ++G++ FK K G +EK YK RLVA+GF Q++GI Y E +P SIR++LS++A + ++ QL+V A+L ++EEIY PE + + K QV LL K++YGL ++ +GF+RS DPCV+ + +V +L+YVDD+L+AS ++ ++ L F +KDLG AS LG I RDR GTLK Q +Y+Q V E F++ ++ +
Sbjct: 822 EPKSYLEARRSKSWKLWNEGMQEEMDSLEKNQTWKLVEKPEKKKIIGSKWVFKLKEGIPG-VEKPRYKARLVAKGFSQVEGIDYTEVFAPVVKHVSIRIMLSLVANYDLDLEQLDVKTAFLYGTLDEEIYMAQPEGFVEEGKEDQVCLLLKSLYGLKQSPRQWNRRFDSFMKQQGFERSAYDPCVYMKGSDSSHMVYLLIYVDDMLIASKDSKEIKRIKDSLKREFEMKDLGAASRILGMDIIRDRKKGTLKLSQGKYLQKVLETFNMAESKAV 1094
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A6A4D1J5_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4D1J5_9STRA) HSP 1 Score: 171 bits (433), Expect = 2.960e-45 Identity = 100/263 (38.02%), Postives = 152/263 (57.79%), Query Frame = 1
Query: 1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRDSRK-QVGLLRKAMYGL--------LEAKGFQRSQA------DPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERF 744
EP T+ EA+ S +W +WK+AI E++ A G + VV P G V+GT + F+ K DGR+++ + R+ AQGF++I I + ++ +P SIR+ L+ G +RQ +V A++++++ E IY + P+ + + QV LL KA+YGL +E F RSQ DPCV + H A ++V+LVYVDD+L+ + D + + L + IKDLGE S++LG H+TRD G +K DQ QY V ERF
Sbjct: 321 EPLTLEEARRSPQWTEWKKAILAEIEALRANGTFTVVTPPAGAHVIGTTMNFRVKRHADGRVDRLRARICAQGFQEIYMIDFVDTYAPVARLISIRVFLAECNQSGIHIRQGDVPTAFVKANLREVIYVKQPKGFEEGEPGQVWLLHKALYGLKQAGREWYIELDEFLRSQGLVPTREDPCVHK---HPAKLLVVLVYVDDILIGYKNEEDMRELMNALEVKYGIKDLGELSWFLGMHVTRDFERGVMKIDQEQYAIEVCERF 580
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM) HSP 1 Score: 168 bits (425), Expect = 5.030e-45 Identity = 103/268 (38.43%), Postives = 144/268 (53.73%), Query Frame = 1
Query: 1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAYRD--SRKQVGLLRKAMYGLLEA--------------KGFQRSQADPCVFRWILHG--AVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERFDV 750
EP T+ EA+AS EWPQW+ AI E+ G W++ E+P G V+G+ FK K D G I KYK RLVAQGF QI G+ Y ++ +P +SIR++ ++ A F WE+ Q++V AYL D+EEEI+ + P + ++V L K +YGL +A GF RS D VF HG I ++ V VDDL +A+ + + L F + DLGE + LG I RDR T+ Q YI T+ RF++
Sbjct: 29 EPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVF--FRHGPNGEIAIVAVSVDDLAIAANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNL 294
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Match: A0A2N9IT45_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IT45_FAGSY) HSP 1 Score: 169 bits (428), Expect = 8.500e-45 Identity = 98/264 (37.12%), Postives = 152/264 (57.58%), Query Frame = 1
Query: 1 EPATMGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRKIDKDGRIEKYKCRLVAQGFRQIKGIHYEESSSPTPAQASIRMVLSMIAAFGWEVRQLNVDMAYLESDVEEEIYAELPEAY--RDSRKQVGLLRKAMYGLLEAK--------------GFQRSQADPCVFRWILHGAVIVVILVYVDDLLVASATKRDEEQAVRDLGSCFPIKDLGEASYYLGYHITRDRNAGTLKFDQHQYIQTVAERF 744
+P+T +A + +W A+ E D GVW++V+R +G V+G + FKRK D G++EK+K RLVA+G+ Q G+ +EE+ SP SIR +LS++A F +E+ Q++V A+L D+EE++Y E PE + + +V L K++YGL +A GF ++ ++PCV+ +H V+++ L YVDD+L+A ++ + L F +KDLGEASY LG I RDR L Q YI T+ E+F
Sbjct: 330 DPSTYSQAIKDFDSKKWISAMNEEFDSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSIRAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVILTL-YVDDILLAGNDVDMLDEVKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKF 592 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65447.14126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig65447.14126.1 >prot_H-elongata_contig65447.14126.1 ID=prot_H-elongata_contig65447.14126.1|Name=mRNA_H-elongata_contig65447.14126.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp MGEAQASSEWPQWKRAIAREMDGQTAPGVWQVVERPKGKTVLGTRVAFKRback to top mRNA from alignment at H-elongata_contig65447:97..912- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig65447.14126.1 ID=mRNA_H-elongata_contig65447.14126.1|Name=mRNA_H-elongata_contig65447.14126.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=816bp|location=Sequence derived from alignment at H-elongata_contig65447:97..912- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig65447:97..912- >mRNA_H-elongata_contig65447.14126.1 ID=mRNA_H-elongata_contig65447.14126.1|Name=mRNA_H-elongata_contig65447.14126.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig65447:97..912- (Himanthalia elongata Himel1 dioecious)back to top |