mRNA_H-elongata_contig65362.14122.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65362.14122.1
Unique NamemRNA_H-elongata_contig65362.14122.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65362.14122.1 vs. uniprot
Match: D8LGE2_ECTSI (Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE2_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 5.930e-94
Identity = 146/249 (58.63%), Postives = 185/249 (74.30%), Query Frame = 2
Query:  230 KLVIVFRGTGTLKEWIENATFMMEQLEGEPEEACFEMLFNRQNLMVHVGFQSIYVQDAVEIKESPKDTIHKILK----EHKPTLEKVTVLGHSLGGAVCQLCAVDIAHSKILEDIPITCIAWGAPRIGNKCLATWVAKHPKLRILRISVSNDSVPKLPPGWLGTFFNGGFHHMGTEIVLSNSHLREKGLVMKE-GFGPNHNLQMYLHNIDPTRDVSLMNKVGNVIPEAFCCKHNISPSWHSLSWPRTVF 961
            ++VIVFRGT T KEWIENAT  MEQL+GEP E+   +L NR  LMVH GFQ +Y + A +   SPKD I+++++    + K ++EKVTV+GHSLG A+ Q CAVD+AHS++L D+PI  +AW AP+ GN  LA WVAK P LRILR+ V  D V  +PP W+ +   GG+ HMGTEI L N+HL + G+V  + G  PNHNLQ YLHNIDPTRDV+LMNKVGNVIP+ +C KH ISPSWHSL++PRTV+
Sbjct:  174 EMVIVFRGTETTKEWIENATLFMEQLDGEPPESGLALLLNRDTLMVHSGFQQLYREKADQF-PSPKDKIYEVIEAFKNDDKVSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGDVPILGLAWAAPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVPPDWMWSITTGGYKHMGTEITLDNTHLHKAGVVKSDDGNSPNHNLQQYLHNIDPTRDVALMNKVGNVIPDDYCRKHGISPSWHSLTFPRTVY 421          
BLAST of mRNA_H-elongata_contig65362.14122.1 vs. uniprot
Match: A0A6H5KDS9_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS9_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 1.130e-91
Identity = 143/250 (57.20%), Postives = 182/250 (72.80%), Query Frame = 2
Query:  230 KLVIVFRGTGTLKEWIENATFMMEQLEGEPEEACFEMLFNRQNLMVHVGFQSIYVQDAVEIKESPKDTIHKILK----EHKPTLEKVTVLGHSLGGAVCQLCAVDIAHSKILEDIPITCIAWGAPRIGNKCLATWVAKHPKLRILRISVSNDSVPKLPPGWLGTFFNGGFHHMGTEIVLSNSHLREKGLVMKE-GFGPNHNLQMYLHNIDPTRDVSLMNKVGNVIPEAFCCKHNISPSWHSLSWPRTVFD 964
            +LVIVFRGT T KEWIENAT  MEQL+GEP E+   +L NR  LMVH GFQ +Y + A     SPKD I+++++    ++K ++EKVTV+GHSLG A+ Q CAVD+AHS++L D+PI  + W  P+ GN  LA WVAK P LRILR+ V  D V  +PP W+ +   GG+ HMGTEI L N+HL + G+V  + G  PNHNLQ YLHNIDPTRDV+LMNKVG VIP+ +C KH ISPSWHSL++PRT++ 
Sbjct:  189 ELVIVFRGTETTKEWIENATLFMEQLDGEPPESGLALLLNRNTLMVHSGFQQLYREKADHF-PSPKDKIYEVIEAFKNDNKVSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGDVPILGLGWAGPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVPPDWMWSMTAGGYKHMGTEITLDNTHLHKAGVVKSDDGNSPNHNLQQYLHNIDPTRDVALMNKVGTVIPDDYCRKHGISPSWHSLTFPRTIYS 437          
BLAST of mRNA_H-elongata_contig65362.14122.1 vs. uniprot
Match: D7FQN1_ECTSI (Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN1_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 6.660e-81
Identity = 127/248 (51.21%), Postives = 179/248 (72.18%), Query Frame = 2
Query:  224 GVKLVIVFRGTGTLKEWIENATFMMEQLEGEPEEACFEMLFNRQNLMVHVGFQSIYVQDAVEIKESPKDTIHKILKE--HKPTLEKVTVLGHSLGGAVCQLCAVDIAHSKILEDIPITCIAWGAPRIGNKCLATWVAKHPKLRILRISVSNDSVPKLPPGWLGTFFNGGFHHMGTEIVLSNSHLREKGLVMKE-GFGPNHNLQMYLHNIDPTRDVSLMNKVGNVIPEAFCCKHNISPSWHSLSWPRTV 958
            G ++V+VFRGT T+KEW  NA   M  LEG  + +  E+ + R NLM H GFQ +Y+       ESP+  IH+ +K+   K  ++KVTV+GHSLG A+CQLCA+D+A+S +  DIPI  +AWGAP++GNK LATWV + P LRILRISV+ D+V +LPP W+G   +GG+   GTE++LSN  ++++GL+  + G  P+H L+ YLH I+P+RDV+L+NK  NV+PE +C +HNI+P+WHS +WPRTV
Sbjct:  147 GKEMVVVFRGTETVKEWARNAKVKMVPLEGAKQLSTLELGWARWNLMCHEGFQQLYIGKPKHF-ESPRTVIHEQIKKWVEKGRVDKVTVVGHSLGAAMCQLCAIDLAYSNVGGDIPILALAWGAPKVGNKTLATWVTEQPNLRILRISVAVDTVIRLPPDWVGFLLSGGYKATGTELILSNMQMQKQGLLRLDVGNSPHHCLEQYLHVIEPSRDVALLNKTCNVLPEEYCLEHNIAPAWHSQTWPRTV 393          
BLAST of mRNA_H-elongata_contig65362.14122.1 vs. uniprot
Match: UPI000901926E (phospholipase A1-IIgamma-like n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000901926E)

HSP 1 Score: 102 bits (253), Expect = 1.190e-19
Identity = 72/259 (27.80%), Postives = 136/259 (52.51%), Query Frame = 2
Query:  233 LVIVFRGTGTLKEWIENATFMMEQLEGEPEEACFEMLFNRQN-LMVHVGFQSIYV---QDAVEIKESPKDTIH----KILKEHKPTLEKVTVLGHSLGGAVCQLCAVDIAHSKIL----EDIPITCIAWGAPRIGNKCLATWVAKHPKLRILRISVSNDSVPKLPP-GW-LGTFFNG--GFHHMGTEIVLSNSHLREKGLVMKEGFGPNHNLQMYLHNID-----PTRD--VSLMNKVGNVIPEAFCCKHNISPSWHSL 940
            +V+V+RGT  L EWI++A F+ +            ++F + +  +VH+G+ S+Y    QD+   ++S +D +     ++++ +K     +TV GHSLG ++  L AVD+A + +     +D+P+T   + +P++G++      +    LR LRIS   D VP LPP GW +G   +    +  +G  +V+ +    +K + +K      H+L +Y+H +D     PT D  V+ +NK  + + + +  +H I   W ++
Sbjct:  129 IVVVWRGTIRLLEWIDDAIFLFDNA---------PLIFGQNSDPLVHMGWYSMYTTTNQDSPFNQKSARDQVREEVARLVELYKDEEISITVTGHSLGSSMATLNAVDLAANPVNNNNNKDVPVTAFLYASPKVGDENFKKAFSNQQNLRALRISDVKDKVPTLPPIGWKVGETIDSKIDYEDVGVGLVIES----KKSVYLKPTGLNYHDLMLYMHGVDLYETTPTGDFDVAKVNKYQDALTDDYVKEHGIPAGWFNV 374          
BLAST of mRNA_H-elongata_contig65362.14122.1 vs. uniprot
Match: A0A2U1N305_ARTAN (Phospholipase A1 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1N305_ARTAN)

HSP 1 Score: 100 bits (249), Expect = 1.880e-18
Identity = 70/243 (28.81%), Postives = 116/243 (47.74%), Query Frame = 2
Query:  233 LVIVFRGTGTLKEWIENATFMMEQLEGEPEEACFEMLFNRQNLMVHVGFQSIYVQDAVEIKESPKDTIHKILKEHKPTLEKVTVLGHSLGGAVCQLCAVDIAH-------SKILEDIPITCIAWGAPRIGNKCLATWVAKHPKLRILRISVSNDSVPKLPPGWLGTFFNGGFHHMGTEIVLSNSHLREKGLVMKEGFGPNHNLQM-YLH------------NIDPTRDVSLMNKVGNVIPEAF 901
            +++ +RGT  + EW+EN  F        P  +  ++        VH G+ SIY       + +      ++++++K     +TV+GHSLGGA+  L   DIAH       S+  + IP+T  A+G P +GN CL    +K   L ILR+    D +P LPP     F   G+ H+G E+ +   H +   L   E +   HN++  YLH             ++  RD++L+NK  N++ + +
Sbjct:  426 IIVSWRGTIQISEWLENFDF--------PLVSASDVFKGSICAQVHSGYLSIYTSIKPNSRFNKTSARDQLVEKYKDEETSITVIGHSLGGALATLTGGDIAHNGYNKPNSESKKPIPVTVFAYGNPFLGNICLRELYSKQEDLHILRVVNVIDPIPLLPP-----FV--GYIHIGHELYID--HRKSVYLKPTENYAKRHNMEAAYLHALAGSHGIEAEFKLEVERDIALVNKRSNLLKDEY 651          
BLAST of mRNA_H-elongata_contig65362.14122.1 vs. uniprot
Match: UPI001CB90D89 (phospholipase A1-IIgamma-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB90D89)

HSP 1 Score: 96.3 bits (238), Expect = 1.550e-17
Identity = 74/257 (28.79%), Postives = 122/257 (47.47%), Query Frame = 2
Query:  233 LVIVFRGTGTLKEWIENATFMMEQLEGEPEEACFEMLFNRQNLMVHVGFQSIYVQ---DAVEIKESPKD----TIHKILKEHKPTLEKVTVLGHSLGGAVCQLCAVDIA-------HSKILEDIPITCIAWGAPRIGNKCLATWVAKHPKLRILRISVSNDSVPKLPPGWLGTFFNGGFHHMGTEIVLSNSHLREKGLVMK--EGFGPNHNLQM-YLHNI------------DPTRDVSLMNKVGNVIPEAFCCKHN 916
            +++ +RGT    EW+EN  F        P  +   +    +   VH GF SIY+    D+   K S +D    T+ +++++++     +TV+GHSLGGA+  L   DIA        S+  + +P+T  A+G P +GN CL   + K   LRILR     D +P LPP         G+ H+G E+ +       K + +K  E +   HN++  YLH +            +  RD++L+NK  N++ + +    N
Sbjct:  136 IMVSWRGTIQAAEWVENFDF--------PLVSASSVFKESKCTQVHSGFLSIYISSHPDSRFNKTSARDQVLSTVKQLVEKYEEEETSITVIGHSLGGALATLSGGDIAVNGYNKPKSENKKPVPVTVFAYGNPFLGNLCLHELLNKQEHLRILRTVNVIDYIPLLPPLV-------GYIHVGRELYIDT----RKSVYLKPTENYAKRHNMEASYLHGLAGSHGVNGEFRLEVDRDIALINKRSNLLKKHYMIPEN 373          
BLAST of mRNA_H-elongata_contig65362.14122.1 vs. uniprot
Match: A0A4D6L4E3_VIGUN (Phospholipase A1 n=2 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6L4E3_VIGUN)

HSP 1 Score: 94.7 bits (234), Expect = 3.320e-17
Identity = 68/240 (28.33%), Postives = 110/240 (45.83%), Query Frame = 2
Query:  233 LVIVFRGTGTLKEWIENATFMMEQLEGEPEEACFEMLFNRQNLMVHVGFQSIYVQD-------AVEIKESPKDTIHKILKEHKPTLEKVTVLGHSLGGAVCQLCAVDIAHS--KILED-----IPITCIAWGAPRIGNKCLATWVAKHPKLRILRISVSNDSVPKLPPGWLGTFFNGGFHHMGTEIVLSNSHLREKGLVMKEGFGPNHNLQMYLH------------NIDPTRDVSLMNK 874
            +V+ +RGT    EW++N  F  +            ++F      VH GF S+Y  +          ++    + + ++++++K     ++V GHSLGGA+  L AVDI      I ++      P+T   + +PR+GN       +K+  LR LRI    D VPKLP G            +G E+V+       K   +K+G    HNL++YLH            N++  RD+SL+NK
Sbjct:  135 IVVAWRGTVQGSEWVQNLDFPSDPA---------PLIFPDARAEVHTGFYSLYTSNNPASPITQTSVRNQVLEEVGRLVEKYKDEEISISVTGHSLGGALATLTAVDIIGQGLNIRKEQPHRICPVTAFLFASPRVGNSHFGKIFSKYKHLRALRIRNKKDQVPKLPIG---------LTVVGEELVIDT----RKSKYLKDGVSA-HNLEVYLHGVAGTQGKKGGFNLEVNRDISLLNK 351          
BLAST of mRNA_H-elongata_contig65362.14122.1 vs. uniprot
Match: UPI000D62F2B9 (phospholipase A1-IIgamma-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D62F2B9)

HSP 1 Score: 95.5 bits (236), Expect = 3.860e-17
Identity = 71/250 (28.40%), Postives = 118/250 (47.20%), Query Frame = 2
Query:  233 LVIVFRGTGTLKEWIENATFMMEQLEGEPEEACFEMLFNRQNLMVHVGFQSIYVQ-------DAVEIKESPKDTIHKILKEHKPTLEKVTVLGHSLGGAVCQLCAVDIA-------HSKILEDIPITCIAWGAPRIGNKCLATWVAKHPKLRILRISVSNDSVPKLPPGWLGTFFNGGFHHMGTEIVLSNSHLREKGLVMKEGFGPNHNLQM-YLH------------NIDPTRDVSLMNKVGNVIPEAF 901
            +++ +RGT  + EW+EN  F        P  +  ++        VH G+ SIY         +    ++     + ++++++K     +TV+GHSLGGA+  L   DIA        S+  + IP+T  A+G P +GN CL   + K  KL ILR+    D +P LPP     F   G+ H+G E+ +     + K L   E +   HN++  YLH             ++  RD++L+NK  N++ E +
Sbjct:  137 ILVSWRGTIQIAEWVENFDF--------PLVSASKVFKQSICAQVHSGYLSIYTSSNSRSRFNKTSARDQVLSMVRQLVEKYKDEETSITVVGHSLGGALATLSGGDIAINGYNETKSRPKKTIPVTVFAYGNPFLGNICLRELLHKKEKLNILRVVNVIDYIPLLPP-----FV--GYIHIGQELWVDTR--KSKYLKPTESYAKRHNMEAAYLHALAGSHGIEAEFRLEVDRDLALVNKRSNLLKEEY 369          
BLAST of mRNA_H-elongata_contig65362.14122.1 vs. uniprot
Match: A0A2J6M3X9_LACSA (Phospholipase A1 n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6M3X9_LACSA)

HSP 1 Score: 91.3 bits (225), Expect = 9.060e-16
Identity = 72/251 (28.69%), Postives = 113/251 (45.02%), Query Frame = 2
Query:  233 LVIVFRGTGTLKEWIENATFMMEQLEGE-PEEACFEMLFNRQNLMVHVGFQSIYVQ-------DAVEIKESPKDTIHKILKEHKPTLEKVTVLGHSLGGAVCQLCAVDIA-------HSKILEDIPITCIAWGAPRIGNKCLATWVAKHPKLRILRISVSNDSVPKLPPGWLGTFFNGGFHHMGTEIVLSNSHLREKGLVMKEGFGPNHNLQM-YLHNIDP------------TRDVSLMNKVGNVIPEAF 901
            +VI +RGT  + EWIEN  F ++      P   C          + H GF SIY         +    ++    TI ++++ +K     +TV+GHSLGGA+  L   DIA        S+  +  P+T  A+G P +GN CL   + K   L ILR     D +  LPP         G+ H+G ++V+     +   L   E +   HN++  YLH +              TRD++L+NK  N++ + +
Sbjct:  136 IVISWRGTIQISEWIENFDFPLKPTTKVFPTSTC---------ALAHSGFLSIYTSSHPNSRFNKTSARDQVVSTIKRLVERYKDEDVSITVIGHSLGGALATLTGGDIAVNGYNKPTSRPNKSFPVTVFAYGNPILGNICLRELLHKQENLHILRTVNMIDFIQFLPPLI-------GYEHIGHKLVIDTR--KSPYLKAIESYAKRHNMEASYLHGLAGSHGVDKEFKLVITRDLALVNKRTNLLKDEY 368          
BLAST of mRNA_H-elongata_contig65362.14122.1 vs. uniprot
Match: UPI001FB09DAF (phospholipase A1-IIbeta-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB09DAF)

HSP 1 Score: 90.1 bits (222), Expect = 1.020e-15
Identity = 70/251 (27.89%), Postives = 110/251 (43.82%), Query Frame = 2
Query:  233 LVIVFRGTGTLKEWIENATFMMEQLEGEPEEACFEMLFNRQNLMVHVGFQSIYVQDA-------VEIKESPKDTIHKILKEHKPTLEKVTVLGHSLGGAVCQLCAVDIAHS--KILEDIPIT----CIAWGAPRIGNKCLATWVAKHPKLRILRISVSNDSVPKLPPGWLGTFFNGGFHHMGTEIVLSNSH---LREKGLVMKEGFGPNHNLQMYLHNIDPT------------RDVSLMNKVGNVIPEAF 901
            +V+ +RGT    EW+ N   + +     P    F  L       VH GF  +Y  +        + +++     + +++  +K     V V GHSLGGA+  L A+DIA +  K  +D  IT      A+ +PRIG   L    A    L ILRI    D+VP  P        N G+  +G  + +       L+ KG +  +G    HN+++YLH +  T            RD+SL+NK G  + + +
Sbjct:  119 IVVAWRGTNEDSEWLNNVGILQQ-----PASLIFGDLEEDDIPWVHGGFYLMYTSNNPDSTFSNISVRDQVLQEVSRLVSMYKNEKISVVVTGHSLGGALTTLNAIDIARNVFKNQDDHSITNLVTAFAFASPRIGGSMLRDSTASLKNLHILRIENKPDAVPDFP--------NIGYRDVGQVLFMDTEESEFLKRKGFISSKGMA--HNMEIYLHGVSGTQGIKTEFKKVVERDISLVNKHGENLVDIY 354          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65362.14122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGE2_ECTSI5.930e-9458.63Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5KDS9_9PHAE1.130e-9157.20Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
D7FQN1_ECTSI6.660e-8151.21Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
UPI000901926E1.190e-1927.80phospholipase A1-IIgamma-like n=1 Tax=Ipomoea nil ... [more]
A0A2U1N305_ARTAN1.880e-1828.81Phospholipase A1 n=1 Tax=Artemisia annua TaxID=356... [more]
UPI001CB90D891.550e-1728.79phospholipase A1-IIgamma-like n=1 Tax=Erigeron can... [more]
A0A4D6L4E3_VIGUN3.320e-1728.33Phospholipase A1 n=2 Tax=Vigna unguiculata TaxID=3... [more]
UPI000D62F2B93.860e-1728.40phospholipase A1-IIgamma-like n=1 Tax=Cynara cardu... [more]
A0A2J6M3X9_LACSA9.060e-1628.69Phospholipase A1 n=3 Tax=Lactuca TaxID=4235 RepID=... [more]
UPI001FB09DAF1.020e-1527.89phospholipase A1-IIbeta-like n=1 Tax=Impatiens gla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65362contigH-elongata_contig65362:50..2643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.8
Seed ortholog evalue4.8e-81
Seed eggNOG ortholog2880.D8LGE2
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1740
Cds size759
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65362.14122.1prot_H-elongata_contig65362.14122.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65362 258..1870 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.6045506-UTR-H-elongata_contig65362:49..2571622931040.6045506-UTR-H-elongata_contig65362:49..257Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65362 50..257 +
1691679673.4455693-UTR-H-elongata_contig65362:49..2571691679673.4455693-UTR-H-elongata_contig65362:49..257Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65362 50..257 +
1622931040.6776175-UTR-H-elongata_contig65362:1870..26431622931040.6776175-UTR-H-elongata_contig65362:1870..2643Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65362 1871..2643 +
1691679673.4894454-UTR-H-elongata_contig65362:1870..26431691679673.4894454-UTR-H-elongata_contig65362:1870..2643Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65362 1871..2643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.6237621-CDS-H-elongata_contig65362:257..4041622931040.6237621-CDS-H-elongata_contig65362:257..404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65362 258..404 +
1691679673.4579453-CDS-H-elongata_contig65362:257..4041691679673.4579453-CDS-H-elongata_contig65362:257..404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65362 258..404 +
1622931040.6407075-CDS-H-elongata_contig65362:822..9731622931040.6407075-CDS-H-elongata_contig65362:822..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65362 823..973 +
1691679673.468251-CDS-H-elongata_contig65362:822..9731691679673.468251-CDS-H-elongata_contig65362:822..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65362 823..973 +
1622931040.6566544-CDS-H-elongata_contig65362:1409..18701622931040.6566544-CDS-H-elongata_contig65362:1409..1870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65362 1410..1870 +
1691679673.4785516-CDS-H-elongata_contig65362:1409..18701691679673.4785516-CDS-H-elongata_contig65362:1409..1870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65362 1410..1870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65362.14122.1

>prot_H-elongata_contig65362.14122.1 ID=prot_H-elongata_contig65362.14122.1|Name=mRNA_H-elongata_contig65362.14122.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=253bp
MQSRLGVKLVIVFRGTGTLKEWIENATFMMEQLEGEPEEACFEMLFNRQN
LMVHVGFQSIYVQDAVEIKESPKDTIHKILKEHKPTLEKVTVLGHSLGGA
VCQLCAVDIAHSKILEDIPITCIAWGAPRIGNKCLATWVAKHPKLRILRI
SVSNDSVPKLPPGWLGTFFNGGFHHMGTEIVLSNSHLREKGLVMKEGFGP
NHNLQMYLHNIDPTRDVSLMNKVGNVIPEAFCCKHNISPSWHSLSWPRTV
FD*
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mRNA from alignment at H-elongata_contig65362:50..2643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65362.14122.1 ID=mRNA_H-elongata_contig65362.14122.1|Name=mRNA_H-elongata_contig65362.14122.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2594bp|location=Sequence derived from alignment at H-elongata_contig65362:50..2643+ (Himanthalia elongata Himel1 dioecious)
TTGTCGTTTCCTCTTGTGTTGGAGAGCATGTTGAATGTTTCTCTCCTTCC GGATGTGTTTTTTTTTACTTGTGACGACGTGCTGGATTTTGACATCACCT TATGTGAGAATTCAATCAATCAATCAAAGTGTATACTTGTGTTGTCCATA GTCCACCTCGCCATTACGCGAGGGATCTAATAGTAGTGTTTGCATATTTT GTCGTTTTATGCAATCTCGCCTCGGTGTAAAGTTGGTGATTGTGTTCCGA GGTACCGGGACGTTGAAGGAGTGGATAGAGAATGCCACGTTCATGATGGA GCAGCTGGAGGGAGAACCCGAAGAAGCTTGCTTTGAAATGCTCTTCAACC GTCAGGTACACAAGGCGATCATTGTCTAAACCCGTGAAACGATTCATAAA AATACACGTAAAATATTTGAGATATGATTTGAATTTCTCCATAAAGCAGG GGAATCGTTGATGATTCCATCGCGGCTGCAAAATAACGTACGGTATCACT GGTTTGATTGCTGTAAAGTAGAGGACGCCTCGTCGAGTTTATCTAGGCGT CGTTATCAGAACTTGAAGAAATGATAGATGCATCAAGGCGACAGGCTCAG CTGGCCCATTGTGGCGCCACGAAATACTGAATTGCGGTAAGCGATAATCA AGCATGACGCAAGTACATCAAGCCGTCAAGCAACTACGCCGCAGATTGCA CCCTCAATCTACCTTAGTTGGTCATCGGAACTGTCACTACTCCGTGTTTT ACTCGTACACCGTGTATCTGCAGAACCTCATGGTCCACGTCGGCTTCCAG TCTATATACGTCCAAGATGCGGTTGAAATTAAGGAGTCCCCCAAAGACAC AATCCACAAGATACTCAAGGAGCACAAGCCTACCCTGGAGAAGGTTACTG TTCTCGGGCACAGCCTTGGAGGCGGTGAGGGAATGGGCGTGAGGTCTACA TAAACGTTTAGTGAAACATACTAACACCTGCGCGAAGAGCTCTACCCGAT GACTTTATCTACTTCATTTGAAAGGGTTGAACGCAGCGGTGTATAGCAAA CTGGTAGCGGTGGCAGGAGAACTACAACGCCTGCCTTTCATTTTGGACAA ATTTAGAAGCGTGCATGCCAAATAGATCTCGAGTATCTGAGGATTTCTCC AGATAGCAGTTTTGCGTTCCTCCTCCACGCAACTATCTAGGTTGGCCGTC ATGTTTCATCGAAATTTCGATGACGTCTTGGATGTCACGAAATACCGACG TGTCAGCTTATGCACCCAACTGTACGAGATATTCAGTTACCGAACTTTTG ACATCCTTGTCCCGCTCTTGAACCCCATACTGGCACACTCTCTTCGGAAT TATAAAATAGCTGTTTGCCAGCTCTGTGCTGTAGACATAGCGCACTCCAA GATACTGGAGGACATTCCCATAACGTGCATTGCATGGGGTGCCCCGAGGA TCGGCAACAAGTGCTTGGCCACCTGGGTAGCCAAGCACCCAAAGCTCCGG ATCTTGAGGATCAGCGTTTCCAACGACAGCGTCCCTAAGTTGCCCCCAGG CTGGCTTGGAACATTTTTCAACGGAGGTTTCCATCATATGGGGACGGAAA TCGTGCTTAGTAACTCACACTTGCGCGAGAAAGGGCTGGTGATGAAAGAG GGTTTCGGCCCTAACCACAACCTCCAGATGTATCTCCACAACATCGACCC TACCAGAGACGTGTCGCTTATGAACAAGGTGGGTAACGTCATCCCTGAAG CGTTTTGCTGCAAACACAATATTTCTCCTTCGTGGCACAGTCTTTCCTGG CCTAGGACCGTATTCGACTAGTGAAGTCGTCTTTGCGGCTTCAAAAGATA GCGTAATACGCTTTGAGAGTTGGAAAAGTACACTTGGGAAACGCTAATTT ATCTTATGCGGTGGTGGAAGGGTAGCTCGCTTGAGAGTCTAGAGAAGCGA CTTCTTCGGGCACGTATGCGGGCAAGTTATTTCTGTGCTTAAATAGTTGG ACCCGTGCCTTCGTGAGGAGTGTGGAGCAGGGTTAAAAAAAACCCATGCA GCGCTGCGCTGGCGCAGAGGGTTTGGAAAATATGCGCTGGCGCAGAATCT CCCGGGCCCTATCTGCGGAAACAAATTTAGGCCCGCATCTTGAAATAATC AATATTTCGTCTTCTCTCTTCTGTGTGATGTATATTTCCATTTAAAACTG CTTCATCCTTCAGACACATTTGATACGACATCTACCCTTGAAACCATTCA AAAATACTCATCATTTCAAGTTAAAAACGCCCACATTTTGACTAATTTGA AGGGGTATTGTATTTTAAAAGAAAAAGGCCAAATTTTGCCCCTCCGGGGG GCAGCATCTCGCCTTCGACTCGAGTCTGCGCCAGCGCAGACCGCTCCTCA GGACTTTTTTTAACCCTGGTGTGGAGTGTTAGTTTTCTTCGCCGAAGGAA ATATATGCCTGAAAGTATTTTAATGATGCAGTATGTTCGTGAGACTAGGA ACATATTATGAGATGAGGAATGGATTTTTTTCTAACTAAGTGTGTTTCTT CTATGTTCGTGATATTTAAAACGGATCATAAAATAAGAGATGGG
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Coding sequence (CDS) from alignment at H-elongata_contig65362:50..2643+

>mRNA_H-elongata_contig65362.14122.1 ID=mRNA_H-elongata_contig65362.14122.1|Name=mRNA_H-elongata_contig65362.14122.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1518bp|location=Sequence derived from alignment at H-elongata_contig65362:50..2643+ (Himanthalia elongata Himel1 dioecious)
ATGCAATCTCGCCTCGGTGTAAAGTTGGTGATTGTGTTCCGAGGTACCGG
GACGTTGAAGGAGTGGATAGAGAATGCCACGTTCATGATGGAGCAGCTGG
AGGGAGAACCCGAAGAAGCTTGCTTTGAAATGCTCTTCAACCGTCAGATG
CAATCTCGCCTCGGTGTAAAGTTGGTGATTGTGTTCCGAGGTACCGGGAC
GTTGAAGGAGTGGATAGAGAATGCCACGTTCATGATGGAGCAGCTGGAGG
GAGAACCCGAAGAAGCTTGCTTTGAAATGCTCTTCAACCGTCAGAACCTC
ATGGTCCACGTCGGCTTCCAGTCTATATACGTCCAAGATGCGGTTGAAAT
TAAGGAGTCCCCCAAAGACACAATCCACAAGATACTCAAGGAGCACAAGC
CTACCCTGGAGAAGGTTACTGTTCTCGGGCACAGCCTTGGAGGCGAACCT
CATGGTCCACGTCGGCTTCCAGTCTATATACGTCCAAGATGCGGTTGAAA
TTAAGGAGTCCCCCAAAGACACAATCCACAAGATACTCAAGGAGCACAAG
CCTACCCTGGAGAAGGTTACTGTTCTCGGGCACAGCCTTGGAGGCGCTGT
TTGCCAGCTCTGTGCTGTAGACATAGCGCACTCCAAGATACTGGAGGACA
TTCCCATAACGTGCATTGCATGGGGTGCCCCGAGGATCGGCAACAAGTGC
TTGGCCACCTGGGTAGCCAAGCACCCAAAGCTCCGGATCTTGAGGATCAG
CGTTTCCAACGACAGCGTCCCTAAGTTGCCCCCAGGCTGGCTTGGAACAT
TTTTCAACGGAGGTTTCCATCATATGGGGACGGAAATCGTGCTTAGTAAC
TCACACTTGCGCGAGAAAGGGCTGGTGATGAAAGAGGGTTTCGGCCCTAA
CCACAACCTCCAGATGTATCTCCACAACATCGACCCTACCAGAGACGTGT
CGCTTATGAACAAGGTGGGTAACGTCATCCCTGAAGCGTTTTGCTGCAAA
CACAATATTTCTCCTTCGTGGCACAGTCTTTCCTGGCCTAGGACCGTATT
CGACTAGCTGTTTGCCAGCTCTGTGCTGTAGACATAGCGCACTCCAAGAT
ACTGGAGGACATTCCCATAACGTGCATTGCATGGGGTGCCCCGAGGATCG
GCAACAAGTGCTTGGCCACCTGGGTAGCCAAGCACCCAAAGCTCCGGATC
TTGAGGATCAGCGTTTCCAACGACAGCGTCCCTAAGTTGCCCCCAGGCTG
GCTTGGAACATTTTTCAACGGAGGTTTCCATCATATGGGGACGGAAATCG
TGCTTAGTAACTCACACTTGCGCGAGAAAGGGCTGGTGATGAAAGAGGGT
TTCGGCCCTAACCACAACCTCCAGATGTATCTCCACAACATCGACCCTAC
CAGAGACGTGTCGCTTATGAACAAGGTGGGTAACGTCATCCCTGAAGCGT
TTTGCTGCAAACACAATATTTCTCCTTCGTGGCACAGTCTTTCCTGGCCT
AGGACCGTATTCGACTAG
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