prot_H-elongata_contig6528.14115.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6528.14115.1
Unique Nameprot_H-elongata_contig6528.14115.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length281
Homology
BLAST of mRNA_H-elongata_contig6528.14115.1 vs. uniprot
Match: A0A6H5K2C5_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2C5_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 1.690e-73
Identity = 141/264 (53.41%), Postives = 175/264 (66.29%), Query Frame = 0
Query:    1 MAPTGYLTTCIVLVAIATADLLTGVSAFAGVLRSGL-RVPHDCS---SSSAVTAARSSARRASV---GISARRRRLPSFTLSMAPP-DTMEAEDGRETIANQDPELHGEVGDTFVKCGKCQACYAIDVEVLGRGRVIECSVCGNTWFQSVERTLTLTQNFLMKNWSEERTRDARTKAAAAPALGFDLFVANIPFSVSEKDLMAIFGNFGQVSSASLAKDELDESKGFGVVKMESEADGQKAIGALNGMGIQGRNILVKAAVSNS 256
            M  T +   C+VL A+ T  ++ GV AF+G LR  + + PHDCS   SSS V+    +   A+V   G            LSMAPP D   AE   +     DP L G  GDT+VKCGKCQACY ++++VLGRGR+IECSVCGN WFQ+ ER LTLT+NFLMK+W+E+R   A T  AA    GF+LFV NIPFSVSEKDL AIFGNFG+V S +L  DE  +S+G+G VKM +E DG+KAI ALNG+ IQGR++LVK   SNS
Sbjct:   32 MGRTRHAGLCLVLAALTTMAVIPGVGAFSGGLRVAITQQPHDCSMVASSSTVSPRPLNPAAAAVTPSGXXXXXXXXSPTALSMAPPMDFGGAEPAEKDPREMDPSLQGSAGDTYVKCGKCQACYPMELDVLGRGRIIECSVCGNRWFQTAERALTLTENFLMKDWTEDRV--AATAEAAKNFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNS 293          
BLAST of mRNA_H-elongata_contig6528.14115.1 vs. uniprot
Match: A0A7R9WVI4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVI4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.330e-21
Identity = 61/187 (32.62%), Postives = 97/187 (51.87%), Query Frame = 0
Query:   81 TMEAEDGRET-----IANQDPELHGEVG------DTFVKCGKCQACYAIDVEVLG--RGRVIECSVCGNTWFQSVERTLTLTQNFLMKNWSE---ERTRDARTKAAAAPALG-FDLFVANIPFSVSEKDLMAIFGNFGQVSSASLAKDELDESKGFGVVKMESEADGQKAIGALNGMGIQGRNILVK 250
            T+   D  ET      AN D     + G       T+ +CG+C   +A+  + LG  RGR +ECSVCG+TW+QS +R   +   F + +  E   +R  +   +  +   +G   L+V NI F+ +E+D+   F   G V   SL +D+   ++GFG + M ++  G+KAI  L+G  + GRNI V+
Sbjct:   35 TLRMADASETPAPAPAANTDATTQSKYGVSIDMPSTYARCGRCDTSFALAPDDLGNGRGRRLECSVCGHTWYQSKDRLSNMNGGFEIIDLPETDLQRIANNIEEGRSPKFVGEMKLYVGNIAFTCTEQDMQEAFSEAGDVGEVSLVRDDEGRNRGFGFITMRTKEGGEKAIELLDGASVNGRNIAVR 221          
BLAST of mRNA_H-elongata_contig6528.14115.1 vs. uniprot
Match: A0A7S1Z4Z8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4Z8_TRICV)

HSP 1 Score: 92.4 bits (228), Expect = 1.040e-18
Identity = 58/174 (33.33%), Postives = 90/174 (51.72%), Query Frame = 0
Query:   84 AEDGRETIANQDPELHGEVGDTFVKCGKCQACYAIDVEVLG---RGRVIECSVCGNTWFQSVERTLTLTQNFLMKNWSEERTRDARTKAAAAPALGF----DLFVANIPFSVSEKDLMAIFGNFGQVSSASLAKDELDESKGFGVVKMESEADGQKAIGALNGMGIQGRNILVK 250
            A   R+ +  +D  + G    T+V+CG+C A YAI  + LG   +GR +ECSVCG++W+QS +R   L+  F  + + +      ++   A     F      +V N+ +   E+ +   F   G V   SL  DE   S+GF  V M +E DG+KA+  L+G  + GRNI V+
Sbjct:   62 ASGARQKMYGKDLAMPG----TYVQCGRCHAAYAIQEDDLGDRGKGRRVECSVCGHSWYQSRDRLFGLSTGFEYRPFPQSDVVRVKSNLEAGRPADFRGVAKFYVGNLDYGTDEESVRVHFETAGTVGDVSLITDEDGRSRGFAFVTMMTEEDGEKAV-QLDGTELAGRNISVR 230          
BLAST of mRNA_H-elongata_contig6528.14115.1 vs. uniprot
Match: A0A6V2PYU0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PYU0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.780e-17
Identity = 52/154 (33.77%), Postives = 88/154 (57.14%), Query Frame = 0
Query:  104 DTFVKCGKCQACYAIDVEVLG---RGRVIECSVCGNTWFQSVERTLTLTQNF-LMKNWSEERTRDARTKAAAA-PALGFD--LFVANIPFSVSEKDLMAIFGNFGQVSSASLAKDELDESKGFGVVKMESEADGQKAIGALNGMGIQGRNILVK 250
            +T+ +CG+C   +A+  E LG   +GR +ECSVCG++W+Q+ ++   + + F L++    + +R  R  AA   P    D  L+V N+ F V+E+DL   F    +V   ++  D+   SKGF  V M ++  G+KA+  L+G  + GRN+ V+
Sbjct:   64 ETYARCGRCSTSFALTSEDLGDRGKGRRVECSVCGHSWYQARDKLFDIREGFELVELPQSDVSRIERNIAADRDPRFTGDSKLYVGNLDFKVTEEDLFEEFSKVDEVGDVTIITDDSGRSKGFAFVTMLTKEGGEKALEKLDGEEVFGRNLNVR 217          
BLAST of mRNA_H-elongata_contig6528.14115.1 vs. uniprot
Match: A0A523K038_9GAMM (RNA-binding protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523K038_9GAMM)

HSP 1 Score: 72.4 bits (176), Expect = 1.060e-12
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 0
Query:  178 DLFVANIPFSVSEKDLMAIFGNFGQVSSASLAKDELD-ESKGFGVVKMESEADGQKAIGALNGMGIQGRNILVKAA 252
            +++V N+P+SVSE DL A F +FG+VSSA++  D +  +SKGFG V+M S+++ ++AI ALN     GRNI V  A
Sbjct:    2 NIYVGNLPYSVSEDDLRAAFADFGEVSSANVIMDRMSGQSKGFGFVEMPSDSEAEEAINALNDSAFNGRNIKVNQA 77          
BLAST of mRNA_H-elongata_contig6528.14115.1 vs. uniprot
Match: I4AKB7_BERLS (RRM domain-containing RNA-binding protein n=3 Tax=Cytophagales TaxID=768507 RepID=I4AKB7_BERLS)

HSP 1 Score: 72.4 bits (176), Expect = 1.210e-12
Identity = 37/77 (48.05%), Postives = 55/77 (71.43%), Query Frame = 0
Query:  178 DLFVANIPFSVSEKDLMAIFGNFGQVSSASLAKD-ELDESKGFGVVKMESEADGQKAIGALNGMGIQGRNILVKAAV 253
            +L+V+N+P+S+SE++L A+F   G V+S  +  D E   S+GFG V+MESE DG+ AI  LNG+ ++GR I VK A+
Sbjct:    2 NLYVSNLPYSISEEELEAVFSELGVVTSTKIITDRETRRSRGFGFVEMESEEDGEAAIEELNGVELKGREIQVKKAI 78          
BLAST of mRNA_H-elongata_contig6528.14115.1 vs. uniprot
Match: A0A2D5XWZ7_9ARCH (RNA-binding protein n=1 Tax=Candidatus Pacearchaeota archaeon TaxID=2026773 RepID=A0A2D5XWZ7_9ARCH)

HSP 1 Score: 70.1 bits (170), Expect = 1.450e-11
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 0
Query:  179 LFVANIPFSVSEKDLMAIFGNFGQVSSASLAKDELD-ESKGFGVVKMESEADGQKAIGALNGMGIQGRNILVKAAVSNSGS 258
            +FV N+PFSV  +DL  IF   G+VS A++  D     S+GFG V  E++ADG KAI A+NG  ++GR + V  A    GS
Sbjct:    1 MFVGNLPFSVKSEDLKQIFSEHGEVSEAAVITDRFSGRSRGFGFVTFENDADGDKAIEAMNGKDVEGREMTVNEARPQGGS 81          
BLAST of mRNA_H-elongata_contig6528.14115.1 vs. uniprot
Match: A0A0F2NE14_9DELT (RNA-binding protein (Fragment) n=2 Tax=Bacteria TaxID=2 RepID=A0A0F2NE14_9DELT)

HSP 1 Score: 68.9 bits (167), Expect = 2.520e-11
Identity = 35/75 (46.67%), Postives = 54/75 (72.00%), Query Frame = 0
Query:  179 LFVANIPFSVSEKDLMAIFGNFGQVSSASLAKDELD-ESKGFGVVKMESEADGQKAIGALNGMGIQGRNILVKAA 252
            L+V N+ + ++E+DL  +F  FGQV SA++ KD+   +SKGFG V+M+++A+ Q AI ALNG  ++GR I+V  A
Sbjct:    3 LYVGNLSYEITEQDLQQMFEQFGQVGSANIIKDKYSGQSKGFGFVEMDAQAEAQAAIEALNGKEMKGRAIIVNEA 77          
BLAST of mRNA_H-elongata_contig6528.14115.1 vs. uniprot
Match: A0A533U5R3_CHLSQ (RNA-binding protein n=1 Tax=Chlorobium sp. TaxID=1095 RepID=A0A533U5R3_CHLSQ)

HSP 1 Score: 68.2 bits (165), Expect = 3.740e-11
Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 0
Query:  178 DLFVANIPFSVSEKDLMAIFGNFGQVSSASLAKDELD-ESKGFGVVKMESEADGQKAIGALNGMGIQGRNILVKAA 252
            ++++ N+P+SV+E DL   F  FGQV+SA++  D+    SKGFG V M S+++G++AIGA+N    +GR I V  A
Sbjct:    2 NIYIGNLPYSVTEDDLREAFSQFGQVNSANIITDKFSGRSKGFGFVDMPSDSEGREAIGAMNDKDFKGRTIKVNEA 77          
BLAST of mRNA_H-elongata_contig6528.14115.1 vs. uniprot
Match: A0A6H9LCB5_9BACT (RNA-binding protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A6H9LCB5_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 7.200e-11
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = 0
Query:  178 DLFVANIPFSVSEKDLMAIFGNFGQVSSASLAKD-ELDESKGFGVVKMESEADGQKAIGALNGMGIQGRNILVKAA 252
            +L+V N+ +  SE+DL A+F  FG++ S ++ KD +  +SKGF  V+M S +D  KAI ALNG  ++GRN+ +  A
Sbjct:    2 NLYVGNLSYETSEEDLKALFDEFGEIESVNVIKDRQTGQSKGFAFVEMPSNSDADKAIKALNGQDLKGRNLKINQA 77          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6528.14115.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2C5_9PHAE1.690e-7353.41RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7R9WVI4_9STRA8.330e-2132.62Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1Z4Z8_TRICV1.040e-1833.33Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6V2PYU0_9STRA5.780e-1733.77Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A523K038_9GAMM1.060e-1248.68RNA-binding protein n=1 Tax=Gammaproteobacteria ba... [more]
I4AKB7_BERLS1.210e-1248.05RRM domain-containing RNA-binding protein n=3 Tax=... [more]
A0A2D5XWZ7_9ARCH1.450e-1145.68RNA-binding protein n=1 Tax=Candidatus Pacearchaeo... [more]
A0A0F2NE14_9DELT2.520e-1146.67RNA-binding protein (Fragment) n=2 Tax=Bacteria Ta... [more]
A0A533U5R3_CHLSQ3.740e-1144.74RNA-binding protein n=1 Tax=Chlorobium sp. TaxID=1... [more]
A0A6H9LCB5_9BACT7.200e-1143.42RNA-binding protein n=1 Tax=Calditrichaeota bacter... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 178..250
e-value: 1.6E-18
score: 77.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 179..247
e-value: 3.3E-17
score: 62.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 177..254
score: 17.251
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 172..279
e-value: 1.3E-22
score: 82.2
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 159..275
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..280
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 179..278

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6528contigH-elongata_contig6528:880..5489 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6528.14115.1mRNA_H-elongata_contig6528.14115.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6528 860..6148 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6528.14115.1 ID=prot_H-elongata_contig6528.14115.1|Name=mRNA_H-elongata_contig6528.14115.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=281bp
MAPTGYLTTCIVLVAIATADLLTGVSAFAGVLRSGLRVPHDCSSSSAVTA
ARSSARRASVGISARRRRLPSFTLSMAPPDTMEAEDGRETIANQDPELHG
EVGDTFVKCGKCQACYAIDVEVLGRGRVIECSVCGNTWFQSVERTLTLTQ
NFLMKNWSEERTRDARTKAAAAPALGFDLFVANIPFSVSEKDLMAIFGNF
GQVSSASLAKDELDESKGFGVVKMESEADGQKAIGALNGMGIQGRNILVK
AAVSNSGSRGGSRGGRGGGGGGRYGGDREY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf