mRNA_H-elongata_contig64945.14080.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI) HSP 1 Score: 392 bits (1006), Expect = 2.650e-122 Identity = 197/225 (87.56%), Postives = 207/225 (92.00%), Query Frame = 1
Query: 1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
+KVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGG QDLSMLDVLQ+FGRAGRPQYDTSGEAIMITTHKSL +YLALLAKQTPIES FIKALPDHLNAEV+SGTVTT G+TWLSYTYLHVRMR+NPMAYGVPLSDRE+DP LLERRRQLI QAA+ LD KMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFN M TL DAAA+N VCLASEFDQ+K R
Sbjct: 934 IKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQYDTSGEAIMITTHKSLDKYLALLAKQTPIESGFIKALPDHLNAEVTSGTVTTVEEGITWLSYTYLHVRMRRNPMAYGVPLSDREADPMLLERRRQLIVQAAETLDDHKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNDAMMPTLADAAAVNLVCLASEFDQVKVR 1158
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A835Z6M6_9STRA (Sec63 Brl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M6_9STRA) HSP 1 Score: 336 bits (861), Expect = 4.820e-103 Identity = 169/225 (75.11%), Postives = 195/225 (86.67%), Query Frame = 1
Query: 1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
L++LVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGA+DLS+LDVLQIFGRAGRPQYDTSGEAI+ITTHKSL RYLALLA+ TPIES+FIKAL DHLNAEV++GTVT V WLSYTYL+VRM+KNPMAYG+ L+D E+DP+ +RR++LI AA LD ++M+R+D +SGNLA TDLGRAASHFYI HESVFRFN MK + DAA + VCLASEFDQI+ R
Sbjct: 172 LRLLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAEDLSILDVLQIFGRAGRPQYDTSGEAILITTHKSLDRYLALLARATPIESNFIKALEDHLNAEVAAGTVTNVREAVMWLSYTYLYVRMQKNPMAYGIKLADAEADPRAEQRRKKLILDAAAVLDDRRMIRYDAQSGNLASTDLGRAASHFYIQHESVFRFNKGMKQQMNDAAVVALVCLASEFDQIRVR 396
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: W7TU71_9STRA (Activating signal cointegrator 1 complex subunit 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU71_9STRA) HSP 1 Score: 316 bits (810), Expect = 5.920e-96 Identity = 155/225 (68.89%), Postives = 185/225 (82.22%), Query Frame = 1
Query: 1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
++VLVCTATLAWG+NLPAHTV+IKGTEVY+P+KGG DLSMLDV+QIFGRAGRPQYDTSGEA+MITTHK+L RYLALL +Q PIES+FIK LPDHLNAE+ SGTVT+ G WL+YTYL++RM KNPMAYGV + DP L +R QLITQAA LD +M RFD RSGNLAVTD+GR ASH+YI HESV +FNG++ LT+A AL+ +C A EF+++K R
Sbjct: 852 IRVLVCTATLAWGINLPAHTVLIKGTEVYSPDKGGFVDLSMLDVMQIFGRAGRPQYDTSGEAVMITTHKALPRYLALLTEQMPIESAFIKQLPDHLNAEIVSGTVTSVKEGAAWLAYTYLYIRMLKNPMAYGVTYEEAAQDPMLDAKRLQLITQAARILDQNRMARFDPRSGNLAVTDMGRTASHYYIRHESVEQFNGLLSQVLTEAQALHVLCAAKEFEEVKVR 1076
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A482UC11_9ARCH (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UC11_9ARCH) HSP 1 Score: 276 bits (707), Expect = 4.380e-89 Identity = 141/227 (62.11%), Postives = 169/227 (74.45%), Query Frame = 1
Query: 1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKST--LTDAAALNTVCLASEFDQIKAR 666
+K+LVCTATLAWGVNLPAHTVIIKGT++Y+ E GG DL MLDV+QIFGRAGRPQ+DTSGE I++T+H L YL +L + PIESSFIKALPDHLNAE+ SGTVT V+WL+YTYL VRM +NP+ YG +D ESDP L + +L+T AA LD+ M+RFD RSGN AVTDLGR ASH+YI H S+ FN VM +T L D+ L VC A EF I+ R
Sbjct: 7 IKILVCTATLAWGVNLPAHTVIIKGTQIYDAEAGGFNDLGMLDVMQIFGRAGRPQFDTSGEGIILTSHDKLQHYLQMLTQSLPIESSFIKALPDHLNAEIVSGTVTNVREAVSWLAYTYLFVRMLRNPLVYGFTWADLESDPMLRGKCVELVTSAAKRLDACHMVRFDPRSGNFAVTDLGRVASHYYIYHTSIETFNTVMDATPLLDDSKVLTLVCRADEFKNIRVR 233
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A4Q5Y1M9_9DELT (Helicase C-terminal domain-containing protein n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5Y1M9_9DELT) HSP 1 Score: 284 bits (727), Expect = 1.320e-87 Identity = 139/225 (61.78%), Postives = 175/225 (77.78%), Query Frame = 1
Query: 1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
++VL CTATLAWGVNLPAHTVI+KGTE+Y+PE+GG D+S+LD+LQIFGRAGRPQYD G A+++T KSL YL LL +QTPIES+ IKAL DHLNAE+ +GTV VTWLSYT+L VRM+ NP+AYG+ L + DPQL ++R L+ +AAD LDS M R+DRRSGNLAVTDLGR ASH+Y+ H+S+ FN ++ L AL+ VC++SEFDQ+K R
Sbjct: 98 IRVLCCTATLAWGVNLPAHTVIVKGTEIYDPERGGFVDMSVLDILQIFGRAGRPQYDVEGHAVLLTHQKSLTHYLGLLTQQTPIESNMIKALADHLNAEIVNGTVNNIREAVTWLSYTFLFVRMKANPLAYGMRLEEVLEDPQLQQKRLTLVKEAADTLDSCMMARYDRRSGNLAVTDLGRIASHYYLKHDSIDIFNRMLSPHLLPREALHLVCVSSEFDQLKCR 322
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A812ZGA7_SYMMI (BRR2C protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZGA7_SYMMI) HSP 1 Score: 271 bits (694), Expect = 1.390e-87 Identity = 132/225 (58.67%), Postives = 172/225 (76.44%), Query Frame = 1
Query: 1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
+KVL CTATLAWGVNLP HTVIIKGTE+Y+PE+GG DLS+LDV QIFGRAGRPQYDT+G A+MIT H+SL YL +L Q PIES+FIKALPDH+NAE+ +GT+ WLSYT+L +RM +NP+AYG+ +D + D +L +R +L+ AA LD M+R+D RSGNLAVTDLGR +SH+YI H++V FN ++ + L + AL+ +C ++EFDQ+K R
Sbjct: 104 IKVLCCTATLAWGVNLPGHTVIIKGTELYDPERGGYVDLSILDVFQIFGRAGRPQYDTTGHAVMITPHQSLNNYLGMLTHQAPIESTFIKALPDHMNAEIVNGTINNIKEASAWLSYTFLFIRMLRNPLAYGMTYADLQEDSRLEAKRLELVRDAAGVLDRCMMIRYDMRSGNLAVTDLGRISSHYYIKHDTVEAFNTMLTAHLGHSDALHVLCSSTEFDQLKMR 328
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A7S3ARM9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ARM9_9EUKA) HSP 1 Score: 266 bits (679), Expect = 1.090e-84 Identity = 131/225 (58.22%), Postives = 167/225 (74.22%), Query Frame = 1
Query: 1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
+ +LVCTATLAWGVNLPAHTVIIKGT++YNPEKG DL +LDV+QIFGRAGRPQ+DTSGE I+IT H L YL +L +Q PIES F+K L DHLNAEV+ GTVT+ VTWLSYTYL+VRM +NPMAYG+PL + SDP+L R +L+ A LD +M+R+ SG+L T++GR A+HFY++ E++ F + T +DA L+T+C A+EF IK R
Sbjct: 105 INLLVCTATLAWGVNLPAHTVIIKGTQLYNPEKGAFVDLGVLDVMQIFGRAGRPQFDTSGEGIIITAHAKLAHYLQMLTQQLPIESQFVKMLSDHLNAEVALGTVTSVKEAVTWLSYTYLYVRMWRNPMAYGIPLDQKASDPRLYAWRTELVRVMAQRLDRSRMVRYHAPSGSLDATEMGRTAAHFYLTVETIETFEEQLAPTASDADILHTLCCAAEFTNIKVR 329
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A7R9U1M1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1M1_9STRA) HSP 1 Score: 281 bits (719), Expect = 5.460e-84 Identity = 138/224 (61.61%), Postives = 174/224 (77.68%), Query Frame = 1
Query: 4 KVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
VL CTATLAWGVNLP HTVIIKGTEVYNPE+GG L +LDV+QIFGRAGRPQ+DT GEAI+IT+H +L YL+LLA Q PIES+FIK L DHLNAE++SGTV+ + WLSYTYL+VRM+KNP+AYGV + +DP LL++RR+L+ AA LD+ +M RF+ SG+LAVTD+GR ASHFYI HES+ +FN +++ TL L+ +C A EF+ +K R
Sbjct: 776 SVLCCTATLAWGVNLPVHTVIIKGTEVYNPERGGFTHLGVLDVMQIFGRAGRPQFDTFGEAILITSHAALPMYLSLLAHQAPIESNFIKQLADHLNAEIASGTVSNTEEAIRWLSYTYLYVRMKKNPLAYGVTWEEISADPDLLDKRRELVRNAARVLDASRMSRFNNVSGSLAVTDVGRTASHFYIRHESIEKFNELLRPTLDIVGCLHVLCSAGEFEDLKCR 999
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A7S1Y115_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y115_9STRA) HSP 1 Score: 278 bits (710), Expect = 5.490e-83 Identity = 135/224 (60.27%), Postives = 172/224 (76.79%), Query Frame = 1
Query: 4 KVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
VL CTATLAWGVNLP HTVIIKGT+VYNPE+GG L +LDVLQIFGRAGRPQYDT GE ++IT+H ++ YL+LLA Q PIESSFIK LPDHLNAE++SGTVT + WL+YTYL+VRM+KNP+AYGV + +DP L+++RR+L+ + A LD+ +M RF+ SG+LAVTD+GR ASHFYI HESV RFN ++ +L ++ +C A EF ++ R
Sbjct: 534 SVLCCTATLAWGVNLPVHTVIIKGTDVYNPERGGFTQLGILDVLQIFGRAGRPQYDTFGEVVLITSHGAMPSYLSLLAHQAPIESSFIKQLPDHLNAEIASGTVTNVEEAIRWLTYTYLYVRMKKNPLAYGVTQEEHATDPDLVDKRRELVLRFARTLDAARMSRFNHVSGSLAVTDVGRTASHFYIRHESVERFNELLAPSLDVIGCMHVLCSAGEFADLRCR 757
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A1V9YGC0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGC0_9STRA) HSP 1 Score: 274 bits (700), Expect = 3.560e-81 Identity = 131/225 (58.22%), Postives = 170/225 (75.56%), Query Frame = 1
Query: 1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
L+VL CTATLAWGVNLPAH V+IKGT++YN EKG LSMLDV+QIFGRAGRPQYDTSGEA ++TTH L YL LL +Q PIES+ IK LPDHLNAE+ SGTV T + WLSYTYL+VRM K+PM YG+ +R +DP L+ +R L+ QAA+ L++ +M+RFD+ G A+T+LGR ASH+YI+H ++ FN ++ + DA LN +C ++EF+Q+K R
Sbjct: 645 LRVLCCTATLAWGVNLPAHAVLIKGTQIYNAEKGCMTPLSMLDVMQIFGRAGRPQYDTSGEATIVTTHDQLDHYLRLLVQQAPIESALIKTLPDHLNAEIVSGTVATMAEALVWLSYTYLNVRMLKSPMTYGMSFDERANDPMLVNKRSALLKQAAETLEACRMIRFDQSRGEFALTNLGRVASHYYITHGTIETFNDLLARDMDDATVLNVICSSTEFEQVKVR 869 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64945.14080.1 >prot_H-elongata_contig64945.14080.1 ID=prot_H-elongata_contig64945.14080.1|Name=mRNA_H-elongata_contig64945.14080.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRback to top mRNA from alignment at H-elongata_contig64945:181..3362+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64945.14080.1 ID=mRNA_H-elongata_contig64945.14080.1|Name=mRNA_H-elongata_contig64945.14080.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3182bp|location=Sequence derived from alignment at H-elongata_contig64945:181..3362+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64945:181..3362+ >mRNA_H-elongata_contig64945.14080.1 ID=mRNA_H-elongata_contig64945.14080.1|Name=mRNA_H-elongata_contig64945.14080.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig64945:181..3362+ (Himanthalia elongata Himel1 dioecious)back to top |