mRNA_H-elongata_contig64945.14080.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64945.14080.1
Unique NamemRNA_H-elongata_contig64945.14080.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI)

HSP 1 Score: 392 bits (1006), Expect = 2.650e-122
Identity = 197/225 (87.56%), Postives = 207/225 (92.00%), Query Frame = 1
Query:    1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
            +KVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGG QDLSMLDVLQ+FGRAGRPQYDTSGEAIMITTHKSL +YLALLAKQTPIES FIKALPDHLNAEV+SGTVTT   G+TWLSYTYLHVRMR+NPMAYGVPLSDRE+DP LLERRRQLI QAA+ LD  KMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFN  M  TL DAAA+N VCLASEFDQ+K R
Sbjct:  934 IKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQYDTSGEAIMITTHKSLDKYLALLAKQTPIESGFIKALPDHLNAEVTSGTVTTVEEGITWLSYTYLHVRMRRNPMAYGVPLSDREADPMLLERRRQLIVQAAETLDDHKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNDAMMPTLADAAAVNLVCLASEFDQVKVR 1158          
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A835Z6M6_9STRA (Sec63 Brl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M6_9STRA)

HSP 1 Score: 336 bits (861), Expect = 4.820e-103
Identity = 169/225 (75.11%), Postives = 195/225 (86.67%), Query Frame = 1
Query:    1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
            L++LVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGA+DLS+LDVLQIFGRAGRPQYDTSGEAI+ITTHKSL RYLALLA+ TPIES+FIKAL DHLNAEV++GTVT     V WLSYTYL+VRM+KNPMAYG+ L+D E+DP+  +RR++LI  AA  LD ++M+R+D +SGNLA TDLGRAASHFYI HESVFRFN  MK  + DAA +  VCLASEFDQI+ R
Sbjct:  172 LRLLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAEDLSILDVLQIFGRAGRPQYDTSGEAILITTHKSLDRYLALLARATPIESNFIKALEDHLNAEVAAGTVTNVREAVMWLSYTYLYVRMQKNPMAYGIKLADAEADPRAEQRRKKLILDAAAVLDDRRMIRYDAQSGNLASTDLGRAASHFYIQHESVFRFNKGMKQQMNDAAVVALVCLASEFDQIRVR 396          
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: W7TU71_9STRA (Activating signal cointegrator 1 complex subunit 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU71_9STRA)

HSP 1 Score: 316 bits (810), Expect = 5.920e-96
Identity = 155/225 (68.89%), Postives = 185/225 (82.22%), Query Frame = 1
Query:    1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
            ++VLVCTATLAWG+NLPAHTV+IKGTEVY+P+KGG  DLSMLDV+QIFGRAGRPQYDTSGEA+MITTHK+L RYLALL +Q PIES+FIK LPDHLNAE+ SGTVT+   G  WL+YTYL++RM KNPMAYGV   +   DP L  +R QLITQAA  LD  +M RFD RSGNLAVTD+GR ASH+YI HESV +FNG++   LT+A AL+ +C A EF+++K R
Sbjct:  852 IRVLVCTATLAWGINLPAHTVLIKGTEVYSPDKGGFVDLSMLDVMQIFGRAGRPQYDTSGEAVMITTHKALPRYLALLTEQMPIESAFIKQLPDHLNAEIVSGTVTSVKEGAAWLAYTYLYIRMLKNPMAYGVTYEEAAQDPMLDAKRLQLITQAARILDQNRMARFDPRSGNLAVTDMGRTASHYYIRHESVEQFNGLLSQVLTEAQALHVLCAAKEFEEVKVR 1076          
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A482UC11_9ARCH (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UC11_9ARCH)

HSP 1 Score: 276 bits (707), Expect = 4.380e-89
Identity = 141/227 (62.11%), Postives = 169/227 (74.45%), Query Frame = 1
Query:    1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKST--LTDAAALNTVCLASEFDQIKAR 666
            +K+LVCTATLAWGVNLPAHTVIIKGT++Y+ E GG  DL MLDV+QIFGRAGRPQ+DTSGE I++T+H  L  YL +L +  PIESSFIKALPDHLNAE+ SGTVT     V+WL+YTYL VRM +NP+ YG   +D ESDP L  +  +L+T AA  LD+  M+RFD RSGN AVTDLGR ASH+YI H S+  FN VM +T  L D+  L  VC A EF  I+ R
Sbjct:    7 IKILVCTATLAWGVNLPAHTVIIKGTQIYDAEAGGFNDLGMLDVMQIFGRAGRPQFDTSGEGIILTSHDKLQHYLQMLTQSLPIESSFIKALPDHLNAEIVSGTVTNVREAVSWLAYTYLFVRMLRNPLVYGFTWADLESDPMLRGKCVELVTSAAKRLDACHMVRFDPRSGNFAVTDLGRVASHYYIYHTSIETFNTVMDATPLLDDSKVLTLVCRADEFKNIRVR 233          
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A4Q5Y1M9_9DELT (Helicase C-terminal domain-containing protein n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5Y1M9_9DELT)

HSP 1 Score: 284 bits (727), Expect = 1.320e-87
Identity = 139/225 (61.78%), Postives = 175/225 (77.78%), Query Frame = 1
Query:    1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
            ++VL CTATLAWGVNLPAHTVI+KGTE+Y+PE+GG  D+S+LD+LQIFGRAGRPQYD  G A+++T  KSL  YL LL +QTPIES+ IKAL DHLNAE+ +GTV      VTWLSYT+L VRM+ NP+AYG+ L +   DPQL ++R  L+ +AAD LDS  M R+DRRSGNLAVTDLGR ASH+Y+ H+S+  FN ++   L    AL+ VC++SEFDQ+K R
Sbjct:   98 IRVLCCTATLAWGVNLPAHTVIVKGTEIYDPERGGFVDMSVLDILQIFGRAGRPQYDVEGHAVLLTHQKSLTHYLGLLTQQTPIESNMIKALADHLNAEIVNGTVNNIREAVTWLSYTFLFVRMKANPLAYGMRLEEVLEDPQLQQKRLTLVKEAADTLDSCMMARYDRRSGNLAVTDLGRIASHYYLKHDSIDIFNRMLSPHLLPREALHLVCVSSEFDQLKCR 322          
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A812ZGA7_SYMMI (BRR2C protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZGA7_SYMMI)

HSP 1 Score: 271 bits (694), Expect = 1.390e-87
Identity = 132/225 (58.67%), Postives = 172/225 (76.44%), Query Frame = 1
Query:    1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
            +KVL CTATLAWGVNLP HTVIIKGTE+Y+PE+GG  DLS+LDV QIFGRAGRPQYDT+G A+MIT H+SL  YL +L  Q PIES+FIKALPDH+NAE+ +GT+        WLSYT+L +RM +NP+AYG+  +D + D +L  +R +L+  AA  LD   M+R+D RSGNLAVTDLGR +SH+YI H++V  FN ++ + L  + AL+ +C ++EFDQ+K R
Sbjct:  104 IKVLCCTATLAWGVNLPGHTVIIKGTELYDPERGGYVDLSILDVFQIFGRAGRPQYDTTGHAVMITPHQSLNNYLGMLTHQAPIESTFIKALPDHMNAEIVNGTINNIKEASAWLSYTFLFIRMLRNPLAYGMTYADLQEDSRLEAKRLELVRDAAGVLDRCMMIRYDMRSGNLAVTDLGRISSHYYIKHDTVEAFNTMLTAHLGHSDALHVLCSSTEFDQLKMR 328          
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A7S3ARM9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ARM9_9EUKA)

HSP 1 Score: 266 bits (679), Expect = 1.090e-84
Identity = 131/225 (58.22%), Postives = 167/225 (74.22%), Query Frame = 1
Query:    1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
            + +LVCTATLAWGVNLPAHTVIIKGT++YNPEKG   DL +LDV+QIFGRAGRPQ+DTSGE I+IT H  L  YL +L +Q PIES F+K L DHLNAEV+ GTVT+    VTWLSYTYL+VRM +NPMAYG+PL  + SDP+L   R +L+   A  LD  +M+R+   SG+L  T++GR A+HFY++ E++  F   +  T +DA  L+T+C A+EF  IK R
Sbjct:  105 INLLVCTATLAWGVNLPAHTVIIKGTQLYNPEKGAFVDLGVLDVMQIFGRAGRPQFDTSGEGIIITAHAKLAHYLQMLTQQLPIESQFVKMLSDHLNAEVALGTVTSVKEAVTWLSYTYLYVRMWRNPMAYGIPLDQKASDPRLYAWRTELVRVMAQRLDRSRMVRYHAPSGSLDATEMGRTAAHFYLTVETIETFEEQLAPTASDADILHTLCCAAEFTNIKVR 329          
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A7R9U1M1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1M1_9STRA)

HSP 1 Score: 281 bits (719), Expect = 5.460e-84
Identity = 138/224 (61.61%), Postives = 174/224 (77.68%), Query Frame = 1
Query:    4 KVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
             VL CTATLAWGVNLP HTVIIKGTEVYNPE+GG   L +LDV+QIFGRAGRPQ+DT GEAI+IT+H +L  YL+LLA Q PIES+FIK L DHLNAE++SGTV+     + WLSYTYL+VRM+KNP+AYGV   +  +DP LL++RR+L+  AA  LD+ +M RF+  SG+LAVTD+GR ASHFYI HES+ +FN +++ TL     L+ +C A EF+ +K R
Sbjct:  776 SVLCCTATLAWGVNLPVHTVIIKGTEVYNPERGGFTHLGVLDVMQIFGRAGRPQFDTFGEAILITSHAALPMYLSLLAHQAPIESNFIKQLADHLNAEIASGTVSNTEEAIRWLSYTYLYVRMKKNPLAYGVTWEEISADPDLLDKRRELVRNAARVLDASRMSRFNNVSGSLAVTDVGRTASHFYIRHESIEKFNELLRPTLDIVGCLHVLCSAGEFEDLKCR 999          
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A7S1Y115_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y115_9STRA)

HSP 1 Score: 278 bits (710), Expect = 5.490e-83
Identity = 135/224 (60.27%), Postives = 172/224 (76.79%), Query Frame = 1
Query:    4 KVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
             VL CTATLAWGVNLP HTVIIKGT+VYNPE+GG   L +LDVLQIFGRAGRPQYDT GE ++IT+H ++  YL+LLA Q PIESSFIK LPDHLNAE++SGTVT     + WL+YTYL+VRM+KNP+AYGV   +  +DP L+++RR+L+ + A  LD+ +M RF+  SG+LAVTD+GR ASHFYI HESV RFN ++  +L     ++ +C A EF  ++ R
Sbjct:  534 SVLCCTATLAWGVNLPVHTVIIKGTDVYNPERGGFTQLGILDVLQIFGRAGRPQYDTFGEVVLITSHGAMPSYLSLLAHQAPIESSFIKQLPDHLNAEIASGTVTNVEEAIRWLTYTYLYVRMKKNPLAYGVTQEEHATDPDLVDKRRELVLRFARTLDAARMSRFNHVSGSLAVTDVGRTASHFYIRHESVERFNELLAPSLDVIGCMHVLCSAGEFADLRCR 757          
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Match: A0A1V9YGC0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGC0_9STRA)

HSP 1 Score: 274 bits (700), Expect = 3.560e-81
Identity = 131/225 (58.22%), Postives = 170/225 (75.56%), Query Frame = 1
Query:    1 LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGRAGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEVSSGTVTT---GVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLITQAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKSTLTDAAALNTVCLASEFDQIKAR 666
            L+VL CTATLAWGVNLPAH V+IKGT++YN EKG    LSMLDV+QIFGRAGRPQYDTSGEA ++TTH  L  YL LL +Q PIES+ IK LPDHLNAE+ SGTV T    + WLSYTYL+VRM K+PM YG+   +R +DP L+ +R  L+ QAA+ L++ +M+RFD+  G  A+T+LGR ASH+YI+H ++  FN ++   + DA  LN +C ++EF+Q+K R
Sbjct:  645 LRVLCCTATLAWGVNLPAHAVLIKGTQIYNAEKGCMTPLSMLDVMQIFGRAGRPQYDTSGEATIVTTHDQLDHYLRLLVQQAPIESALIKTLPDHLNAEIVSGTVATMAEALVWLSYTYLNVRMLKSPMTYGMSFDERANDPMLVNKRSALLKQAAETLEACRMIRFDQSRGEFALTNLGRVASHYYITHGTIETFNDLLARDMDDATVLNVICSSTEFEQVKVR 869          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64945.14080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN81_ECTSI2.650e-12287.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z6M6_9STRA4.820e-10375.11Sec63 Brl domain-containing protein n=1 Tax=Tribon... [more]
W7TU71_9STRA5.920e-9668.89Activating signal cointegrator 1 complex subunit 3... [more]
A0A482UC11_9ARCH4.380e-8962.11Helicase C-terminal domain-containing protein (Fra... [more]
A0A4Q5Y1M9_9DELT1.320e-8761.78Helicase C-terminal domain-containing protein n=1 ... [more]
A0A812ZGA7_SYMMI1.390e-8758.67BRR2C protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S3ARM9_9EUKA1.090e-8458.22Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7R9U1M1_9STRA5.460e-8461.61Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1Y115_9STRA5.490e-8360.27Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A1V9YGC0_9STRA3.560e-8158.22Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64945contigH-elongata_contig64945:181..3362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score393.7
Seed ortholog evalue5.9e-107
Seed eggNOG ortholog2880.D7FN81
KEGG koko:K12854,ko:K18663
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0952@2759
EC3.6.4.12,3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Hectar predicted targeting categorysignal peptide
Exons5
Model size669
Cds size669
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64945.14080.1prot_H-elongata_contig64945.14080.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64945 181..3362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931034.9974182-CDS-H-elongata_contig64945:180..3181622931034.9974182-CDS-H-elongata_contig64945:180..318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64945 181..318 +
1691679670.8985147-CDS-H-elongata_contig64945:180..3181691679670.8985147-CDS-H-elongata_contig64945:180..318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64945 181..318 +
1622931035.0113542-CDS-H-elongata_contig64945:919..9991622931035.0113542-CDS-H-elongata_contig64945:919..999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64945 920..999 +
1691679670.9139545-CDS-H-elongata_contig64945:919..9991691679670.9139545-CDS-H-elongata_contig64945:919..999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64945 920..999 +
1622931035.0254867-CDS-H-elongata_contig64945:1825..19281622931035.0254867-CDS-H-elongata_contig64945:1825..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64945 1826..1928 +
1691679670.9255822-CDS-H-elongata_contig64945:1825..19281691679670.9255822-CDS-H-elongata_contig64945:1825..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64945 1826..1928 +
1622931035.0371516-CDS-H-elongata_contig64945:2369..25281622931035.0371516-CDS-H-elongata_contig64945:2369..2528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64945 2370..2528 +
1691679670.9340882-CDS-H-elongata_contig64945:2369..25281691679670.9340882-CDS-H-elongata_contig64945:2369..2528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64945 2370..2528 +
1622931035.0497444-CDS-H-elongata_contig64945:3173..33621622931035.0497444-CDS-H-elongata_contig64945:3173..3362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64945 3174..3362 +
1691679670.942875-CDS-H-elongata_contig64945:3173..33621691679670.942875-CDS-H-elongata_contig64945:3173..3362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64945 3174..3362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64945.14080.1

>prot_H-elongata_contig64945.14080.1 ID=prot_H-elongata_contig64945.14080.1|Name=mRNA_H-elongata_contig64945.14080.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
LKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAQDLSMLDVLQIFGR
AGRPQYDTSGEAIMITTHKSLYRYLALLAKQTPIESSFIKALPDHLNAEV
SSGTVTTGVTWLSYTYLHVRMRKNPMAYGVPLSDRESDPQLLERRRQLIT
QAADNLDSQKMLRFDRRSGNLAVTDLGRAASHFYISHESVFRFNGVMKST
LTDAAALNTVCLASEFDQIKAR*
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mRNA from alignment at H-elongata_contig64945:181..3362+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64945.14080.1 ID=mRNA_H-elongata_contig64945.14080.1|Name=mRNA_H-elongata_contig64945.14080.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3182bp|location=Sequence derived from alignment at H-elongata_contig64945:181..3362+ (Himanthalia elongata Himel1 dioecious)
TTGAAGGTGCTGGTGTGCACAGCGACTCTAGCGTGGGGGGTCAACCTCCC GGCTCACACGGTGATCATCAAGGGAACGGAAGTCTACAACCCAGAAAAAG GGGGGGCGCAAGACCTTAGCATGCTTGACGTGCTGCAGGTGGGGCCCTGC AATATCTTCCTTCTTGGTTTTATAAAATTATTTATTTATTTTCTTCATTT ATTTTCTTCATTTATTTTATTTATTTATGCTTTCTTTCTCTCTTTTTCTT TTTTTAGTTTCTTATTTTTATTTTTTATTTCTCTCCTTTTTCTCTTTCCC CTCTTCTCCATTTTTTTCTCTCTCACTCTTCACTGAAATCGAGTACTACT ATTACTACAGAAGTATTTTATATTTTACGTGCTGAGATGTCGAAATGTCG AAATATAGTCTATACAACTACGTTACACCTGATTTGTTTGGATTTTGTTT TTGCTTTTTATCAGGGTGGGAAGGGTTCGCTGGTTTTGGTTTTTGGTTGT TGGTAATTTTTATTGTGGTGTTTCTCCCCATTATCTCCGTACGAGTAGTA AATGCATCCCGATCCGATACAATCCGAATAACGCTGTCCATTTTTGAGCG CTTTTAAGTAACGCTGCCCGTCGGGGTCCTGTGTGCCTGAACATGTGTTT TTTGTCTCTTTTTTTGTCACTATATGTTATGTTGATTTTTATTTTTTTAT TTTTTTTATGTTTGTCGGGGGGTTTTCCGCTTTCCCAAGATTTTCGGCCG TGCGGGACGGCCTCAGTACGACACCAGCGGGGAGGCCATCATGATTACGA CCCACAAGTCACTCTACAGGTGCCGTCTGCCTATGCCACATTTCGTCAGT TGACAGTGCCGTCAGTTGACAGTGCTGGTACTAATGTTAATGTTAATGAT GGTGTGGATTCATGGATCGATCGTTCATAATTATTAGTAGAGATATGCTT CAGCCCTTCTCTCTCTATATTATATTAGTCTATATTATAAAGAGGCTTGT ACATACTTTCGAAGTTCTTTATAAGACGTGTTTGTGTTTTGGAGGGCTTT TTTTCTTAAGTTTAGCTTTTTCTTTTTCTTCTCTTAATTATTCATGTTTT CATTATGCTCGTCTCGATCGTTCCCAGGCAGGATTCCTCTTCTATATACT ATTAATAGACTATTAATAGAATATACCCGTAATTAAAAATCAAAGTACAA TATAAAAACGAAAGTAAAATAAAACACTTTAAAATAAAACATAAATATAA ACAAGATGTGGTCGTCTCCGGAAGCTCTCTTCCTTCGCAGACCTTCGCAG ACAGTACAGTAGAGTAGAGAGTAGAAAATGGATAACTCTTACTTGTGATA TAGGGCTAGGCGTCAACCTTTCTGCTTTTAAGAGTATGTTCGTGAGACTG GGAACGGATTATGAGATAAGGAATAAAAAATACCCCATCTCTTATTTTAT GATCCATTTTTAAATATCACGAACATAGAAGAAACACATGTAGTTAAATA ATTTCCCCATTCCTCATCTCATAATATGTTCCTAGTCTCACGAACATACT TTTTTCCGTAGATTAAACTATTATAGATGAGATTAGACGAGACACCTCTC CGGCTGTGATGATTGTCGTATTGTCGTGATGTCGTCAAACTTCAGGTACC TCGCGCTGCTGGCGAAGCAAACGCCGATCGAGAGCTCGTTCATCAAGGCT CTTCCGGACCATCTGAATGCCGAAGTGTCCTCGGGCACGGTTACCACTGT CGAGGAGGCGAGTCTGATTAGTCCACCGTAGAGGAGGCGATGCTGATTGA TCCACTGGGCTATAGAGGAAGCGGGTCTGCTTGGTCCACTGTACTGTAGA GGAGGCGATGCTGATTGGTGCGCCGTATAGCTACTGATGATTGATGATTG ATGACTGATGATCCTGCGCGGCATTGACGAAATATAAAAGGCACCCAAGA GCAGAATCGGTATTAGGTCCAGTCAGTCAGACAAGGTGCAGCCATGCCAT GCGCGTGAAATCGCAACTCAAAACACCAAAACACCAGCAACCAGAGCCAA CATCCGATATCCTTCATCCTCCCTTTCGACCGAGAGATTACATGAAAGGA CATGACATGACATGTCGCCTGCGACTACCTCGACGGTCCGCCTAAAACAT GTCACCCATGTCGCCCACGCTCTCCCTCGACAAACGCAGGGCGTCACTTG GCTCTCCTACACCTATCTCCACGTGAGGATGCGAAAAAACCCCATGGCCT ACGGCGTGCCGCTCTCGGACCGCGAGTCGGACCCCCAGCTGCTGGAGCGC CGTCGGCAGCTCATCACCCAGGCAGCTGATAATCTGGACAGCCAAAAGGT TTGTGTGTGTGTTTGTGTATGTATTTATTGTGTTTATGTCTGTGTGTGTG TGTGTATGTGTATTTATTAAATTGCACATAACCGCGCAATCCGGCCCTGT CGTCCTAGTCCTTCTATGCCACTCGTATTGATCCTCCTAGGGGGGGGATC AATTATAATGTGTGTGTATGTGTGTATACATTGTGTCAATGTGTCTGCTC CACGAAAGAGGGTACTCTGAAACGCAATGATTTAAATCGTGGCTCTTTTG AAGCAGGCAGTCAAGTCAAATCAAGTCATCCCCTTTCGGTTGTAAATATT TTTGAGACAGGAGGAACGGAAAGCTAACGCGGCGCAATCCGGAAGCTCAT AAATCGAAATTCCAATTCCCATTCTCATTCCCATTCACCCATTATTCGAA CCTGACGATAGTTGGTCATGGTCCCCTGAATTACGATGCGCAACTCTGAA ACGCATCTGAAGCTAATGGTGCGGTTTATATTTCTCTCCTGACGGAAAAA GAGGCCCTGCGGCGGAGGTCTTGCGAATGGACGCATCACTATCTCCCTAT CCCTGCCGCATTTCAAAAACGCCTCCTTTGACGGAACTTATTGATATACC TTGTATACCACATAAGGATGTTCCCCTCTCCACGATACCTCAGATGCTCA GGTTCGATCGGCGATCGGGCAACCTTGCGGTGACCGATCTCGGCCGAGCG GCGTCGCACTTCTACATCAGCCACGAGAGCGTATTCCGCTTTAACGGCGT CATGAAGTCTACCCTCACCGACGCTGCTGCGCTGAACACGGTGTGCCTCG CCAGCGAGTTCGACCAAATCAAGGCGAGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig64945:181..3362+

>mRNA_H-elongata_contig64945.14080.1 ID=mRNA_H-elongata_contig64945.14080.1|Name=mRNA_H-elongata_contig64945.14080.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig64945:181..3362+ (Himanthalia elongata Himel1 dioecious)
TTGAAGGTGCTGGTGTGCACAGCGACTCTAGCGTGGGGGGTCAACCTCCC
GGCTCACACGGTGATCATCAAGGGAACGGAAGTCTACAACCCAGAAAAAG
GGGGGGCGCAAGACCTTAGCATGCTTGACGTGCTGCAGTTGAAGGTGCTG
GTGTGCACAGCGACTCTAGCGTGGGGGGTCAACCTCCCGGCTCACACGGT
GATCATCAAGGGAACGGAAGTCTACAACCCAGAAAAAGGGGGGGCGCAAG
ACCTTAGCATGCTTGACGTGCTGCAGATTTTCGGCCGTGCGGGACGGCCT
CAGTACGACACCAGCGGGGAGGCCATCATGATTACGACCCACAAGTCACT
CTACAGATTTTCGGCCGTGCGGGACGGCCTCAGTACGACACCAGCGGGGA
GGCCATCATGATTACGACCCACAAGTCACTCTACAGGTACCTCGCGCTGC
TGGCGAAGCAAACGCCGATCGAGAGCTCGTTCATCAAGGCTCTTCCGGAC
CATCTGAATGCCGAAGTGTCCTCGGGCACGGTTACCACTGTACCTCGCGC
TGCTGGCGAAGCAAACGCCGATCGAGAGCTCGTTCATCAAGGCTCTTCCG
GACCATCTGAATGCCGAAGTGTCCTCGGGCACGGTTACCACTGGCGTCAC
TTGGCTCTCCTACACCTATCTCCACGTGAGGATGCGAAAAAACCCCATGG
CCTACGGCGTGCCGCTCTCGGACCGCGAGTCGGACCCCCAGCTGCTGGAG
CGCCGTCGGCAGCTCATCACCCAGGCAGCTGATAATCTGGACAGCCAAAA
GGGCGTCACTTGGCTCTCCTACACCTATCTCCACGTGAGGATGCGAAAAA
ACCCCATGGCCTACGGCGTGCCGCTCTCGGACCGCGAGTCGGACCCCCAG
CTGCTGGAGCGCCGTCGGCAGCTCATCACCCAGGCAGCTGATAATCTGGA
CAGCCAAAAGATGCTCAGGTTCGATCGGCGATCGGGCAACCTTGCGGTGA
CCGATCTCGGCCGAGCGGCGTCGCACTTCTACATCAGCCACGAGAGCGTA
TTCCGCTTTAACGGCGTCATGAAGTCTACCCTCACCGACGCTGCTGCGCT
GAACACGGTGTGCCTCGCCAGCGAGTTCGACCAAATCAAGGCGAGATGAA
TGCTCAGGTTCGATCGGCGATCGGGCAACCTTGCGGTGACCGATCTCGGC
CGAGCGGCGTCGCACTTCTACATCAGCCACGAGAGCGTATTCCGCTTTAA
CGGCGTCATGAAGTCTACCCTCACCGACGCTGCTGCGCTGAACACGGTGT
GCCTCGCCAGCGAGTTCGACCAAATCAAGGCGAGATGA
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