mRNA_H-elongata_contig64359.14023.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64359.14023.1
Unique NamemRNA_H-elongata_contig64359.14023.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: D8LLA6_ECTSI (Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLA6_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 8.810e-118
Identity = 179/236 (75.85%), Postives = 197/236 (83.47%), Query Frame = 1
Query:    1 KVIEKGSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIVRGDNPG-GSIPDTVRELLRKVAAGEALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
            +VIE+GSPEMRVLECVP G++GISK  LE ALGAD+VKIGLGQCMKN+WV+KGEGG +VRG N G G++ D  +ELL+KV  GE L +QQ KDLKRRKL+TQVTRKSF VTRG SYA RRV+RQAELTKEMLA+ SWKD++FKEYNFK LG PCGGGNLHPLLK               VR EFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDP SAL
Sbjct:   73 RVIEEGSPEMRVLECVPVGSDGISKAGLEAALGADVVKIGLGQCMKNKWVAKGEGGVLVRGANGGDGAVEDAAKELLKKVEGGETLGDQQAKDLKRRKLVTQVTRKSFKVTRGGSYAVRRVKRQAELTKEMLASGSWKDAAFKEYNFKTLGAPCGGGNLHPLLK---------------VRTEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPASAL 293          
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: A0A835YKG3_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKG3_9STRA)

HSP 1 Score: 260 bits (665), Expect = 3.190e-81
Identity = 138/239 (57.74%), Postives = 167/239 (69.87%), Query Frame = 1
Query:    1 KVIEKGSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIVRGDNPGGSIPDTVRELLRKV-AAG---EALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
            +V   GSPE +V + VP G  GISK  LE  LGA LVKIG+G CMK  W+ KG  G++V+G +    + DT ++ LR + AAG   E+LS +  K+LKRRK++TQ+ RKSF VTRG  YA  R ++ A+LT+EML +  WK +SFKEYNF  LG P GGG LHPLLK               VRAEFR +LM MGFEEMPTNRWVESSFWNFD+LFQPQSHPARDAHDTFF+KDP  A+
Sbjct:   71 EVAAYGSPEYQVWKAVPAGDAGISKADLEAQLGAPLVKIGMGACMKVGWLKKGPQGALVKGSD---DVRDTTQDKLRALEAAGGALESLSAEDAKELKRRKMVTQIMRKSFKVTRGAQYALERKKKTADLTREMLESGEWKTTSFKEYNFNTLGAPTGGGYLHPLLK---------------VRAEFRNVLMQMGFEEMPTNRWVESSFWNFDALFQPQSHPARDAHDTFFVKDPAQAV 291          
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: B8C1R3_THAPS (Phenylalanine--tRNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1R3_THAPS)

HSP 1 Score: 231 bits (589), Expect = 7.710e-70
Identity = 124/239 (51.88%), Postives = 156/239 (65.27%), Query Frame = 1
Query:    4 VIEKGSPEMRVLEC-VPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIVRGDNPGGSIPDTVRELLRKVAAG----EALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
            ++  GS E  V+   +  G +G+S   L+  +G D+ KIG+G C+KN+W  K + G +V        + D V+ LL K+  G    + L ++    LKRRKLIT VTRKS+ + RGPSYA +RV++ A+LTKE+L +  WKD+ FKEYNF  LG   GGG LHPLLK               VRAEFRKILM MGF EMPTN+WVESSFWNFDSLFQPQSHPARDAHDTFFIK+P   +
Sbjct:   68 ILANGSQECIVIAALIAAGEDGLSMTDLQNGVGKDVCKIGMGNCLKNKWARKEKDGRLVAQVE---GVEDEVKVLLGKLKEGGGGADVLDDKAIAILKRRKLITLVTRKSYTIIRGPSYAPQRVKKAADLTKELLDSGKWKDTPFKEYNFATLGESVGGGYLHPLLK---------------VRAEFRKILMEMGFHEMPTNKWVESSFWNFDSLFQPQSHPARDAHDTFFIKEPAQTV 288          
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: A0A7S1UU01_9STRA (Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UU01_9STRA)

HSP 1 Score: 226 bits (575), Expect = 4.130e-68
Identity = 120/237 (50.63%), Postives = 160/237 (67.51%), Query Frame = 1
Query:    4 VIEKGSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIV---RGDNPGGSIPDTVRELLRKVAAGEALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
            +++ GS E+ VL+ +    + +S   L+  +G D+ KIG+G CMK++W+ K +GG +V     D+   S+  ++++L+    + + L E+    LKRRKL++  TRKS  VT+G SYA +RV++ A+LTKEML + SWK ++FK YNF ALG   GGG LHPLLK               VRAEFRKILM MGF EMPTN+WVESSFWNFDSLFQPQSHPARDAHDTFFIK+P   +
Sbjct:   50 IVKNGSQEIIVLKALVESGK-LSMPDLQAKVGKDVAKIGMGNCMKSKWIKK-DGGDLVPLKTMDDVTDSVQQSLKKLIESEGSVDTLDEKTLASLKRRKLVSLATRKSLKVTKGSSYAPKRVKKAADLTKEMLESGSWKTTTFKPYNFAALGEKVGGGYLHPLLK---------------VRAEFRKILMEMGFHEMPTNKWVESSFWNFDSLFQPQSHPARDAHDTFFIKEPAETV 269          
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: A0A7S4J9R1_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J9R1_9STRA)

HSP 1 Score: 226 bits (577), Expect = 4.600e-68
Identity = 125/238 (52.52%), Postives = 158/238 (66.39%), Query Frame = 1
Query:    4 VIEKGSPEMRVLEC-VPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIV---RGDNPGGSIPDTVRELLRKVAAGEALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
            ++E GSPE+ VL+  +  G  G+S   L+G +G  L KIG+G CMKN+W  K +GG++V   + D        +++ L       +AL  +    LK+RKL+T VT++S+ VTRG SYA  RV++ ++LTKEML T +WK + FK YNF ALG   GGG LHPLLK               VRAEFRKILM MGF EMPT++WVESSFWNFDSLFQPQSHPARDAHDTFFIK+P S L
Sbjct:   70 ILENGSPEVAVLKVLIEAGEGGMSVGDLQGKVGKALCKIGMGNCMKNKWAKK-DGGNLVAIKKLDEVTDETQASLKALSDAQGNPDALGNKVVNALKKRKLVTLVTKRSYKVTRGASYAPVRVKKASDLTKEMLDTGAWKTTPFKPYNFLALGENVGGGYLHPLLK---------------VRAEFRKILMEMGFHEMPTDKWVESSFWNFDSLFQPQSHPARDAHDTFFIKEPASTL 291          
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: A0A6A4YUU2_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6A4YUU2_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.190e-67
Identity = 117/234 (50.00%), Postives = 156/234 (66.67%), Query Frame = 1
Query:   16 GSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIVRGDNPGGSIPDTVRELLRKVAAGEA----LSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
            GSPE+++   +P  T+G  K  LEGA+GA L K+  G CMKN+W+   +   ++  +    S+ DT  E L++VAA +     +S+  +KDLKRRKLI+   RKSF + +GP++A +R R+ A L K+ML +E WK   FK YNF  +G+  GGG+LHPL+K               VRAEFR++LM MGF+EMPTNRWVESSFWNFD+LFQPQSHPARDAHDTFF+  P  A+
Sbjct:   78 GSPEVQLFHAIPA-TDGADKATLEGAVGAALFKVAQGACMKNKWIRMDKATGLIYRNVA--SVEDTATEQLKQVAAVQGNVDHVSDNVSKDLKRRKLISLQVRKSFRIGKGPNFAVQRKRQAAGLNKDMLDSEEWKTEKFKPYNFNTMGLAVGGGHLHPLMK---------------VRAEFRRVLMDMGFDEMPTNRWVESSFWNFDALFQPQSHPARDAHDTFFLTTPAKAV 293          
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: K3WA38_GLOUD (Phenylalanine--tRNA ligase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WA38_GLOUD)

HSP 1 Score: 223 bits (567), Expect = 1.380e-66
Identity = 117/238 (49.16%), Postives = 158/238 (66.39%), Query Frame = 1
Query:    7 IEKGSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEG-GSIVRGDNPGGSIPDTVRELLRKVAAGE----ALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
            + KGSPE++V   +P  +EGI +  LEG +GA  +K+G G CMKNRW+   +  G   R      S+ D   E+LR++ + E    A++  + K+LKRR LI   TRKS+ +T+GP+++ +R ++ A L KEML  ++WK  +FK YNF  LG+  GGG+LHPL+K               VRAEFR++LM MGF+EMPTNR+VESSFWNFDSLFQPQSHPARDAHDTFF+  P+  L
Sbjct:   75 LAKGSPEVQVFHAIPA-SEGIDRATLEGVVGATTLKVGQGACMKNRWIRLDKADGKFYRNVE---SVVDEATEMLRRIESAEGALSAVTADEAKNLKRRNLIDVRTRKSYKITKGPNFSLQRKKQAAGLNKEMLEGDAWKRETFKPYNFNTLGLAVGGGHLHPLMK---------------VRAEFRRVLMDMGFQEMPTNRYVESSFWNFDSLFQPQSHPARDAHDTFFLTKPQKCL 293          
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: A0A7S4ERJ0_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ERJ0_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.410e-66
Identity = 123/236 (52.12%), Postives = 161/236 (68.22%), Query Frame = 1
Query:    4 VIEKGSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIV--RGDNPGGSIPDTVRELLRKVAAGEALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
            ++  GS E  VL+ +    + +S   L+  +G D+ KIG+G CMK++W+ K +GG +V  + D+    I D+V++LL  +   +A+ ++  KDLKRRKLI+ VT KS  VTRGP YA +RV++ A+LTKEML + SW+ + +K YNF  LG   GGG LHPLLK               VRAEFRKILM MGF+EMPTN+WVESSFWNFDSLFQPQSHPARDAHDTFFIK+P   +
Sbjct:   71 IVANGSQEFIVLKALNEAGK-LSMGDLQAKVGKDVAKIGMGNCMKSKWIKK-DGGDLVALKKDD---EIEDSVQKLLLDL---KAIDDKIAKDLKRRKLISLVTLKSHKVTRGPQYAPKRVKKAADLTKEMLDSGSWETTEYKPYNFLVLGEKVGGGYLHPLLK---------------VRAEFRKILMEMGFQEMPTNKWVESSFWNFDSLFQPQSHPARDAHDTFFIKNPAETV 283          
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: A0A448YUG9_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUG9_9STRA)

HSP 1 Score: 229 bits (583), Expect = 4.530e-66
Identity = 126/236 (53.39%), Postives = 163/236 (69.07%), Query Frame = 1
Query:    4 VIEKGSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIV--RGDNPGGSIPDTVRELLRKVAAGEALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
            V+  G+ E+ VL+ +    + +S   L+  +G D+ KIG+G CMK++W+ K EGG +V  + D+    + DTV++LL  +   +A+ ++  KDLKRRKLIT VT+KS  VTRGP YA +RV++ A+LTKEML + SW+ + FK YNF  LG   GGG LHPLLK               VRAEFRKILM MGF+EMPTN+WVESSFWNFDSLFQPQSHPARDAHDTFFIK+P   +
Sbjct:   71 VVANGAQEIIVLKALNEAGK-LSMGDLQAKVGKDVAKIGMGNCMKSKWIKK-EGGDLVALKKDD---EVEDTVQKLLLDL---KAIDDKTAKDLKRRKLITLVTQKSHKVTRGPQYAPQRVKKAADLTKEMLDSGSWETTEFKPYNFLVLGEKVGGGYLHPLLK---------------VRAEFRKILMEMGFQEMPTNKWVESSFWNFDSLFQPQSHPARDAHDTFFIKNPAETV 283          
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: A0A7S0SRK0_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRK0_9STRA)

HSP 1 Score: 221 bits (562), Expect = 7.120e-66
Identity = 119/233 (51.07%), Postives = 153/233 (65.67%), Query Frame = 1
Query:   16 GSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIVRGDNPGGSIPDTVRELLRKVAAGEALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATES-------WKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDP 693
            GSPE  + + +P    GI+ N+L+ +L  ++VKIGLG CMKN+W+ K +G  I+R       I D  R+L+  + A + LSE   K+LK RKLI Q+T+K F + +G  +   RVR+ A+LTK+M+  ++       W D SFK  N K++G P  GGN HPLLK               VRAEFR+ILM MGFEEMPTN+WVESSFWNFD+LFQPQSHPARDAHDTFFIKDP
Sbjct:   73 GSPEYILYQSIPIDN-GITLNQLQSSLNDEIVKIGLGPCMKNKWIKK-QGDLIIRVSTA--IINDDTRDLVNSILANQTLSEDNYKNLKNRKLIRQITKKYFRIIKGNDFREVRVRKLADLTKDMIGNKTEMAAGSHWSDLSFKSVNLKSMGAPVQGGNYHPLLK---------------VRAEFRRILMEMGFEEMPTNKWVESSFWNFDALFQPQSHPARDAHDTFFIKDP 286          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLA6_ECTSI8.810e-11875.85Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxI... [more]
A0A835YKG3_9STRA3.190e-8157.74Phenylalanine--tRNA ligase n=2 Tax=Tribonema minus... [more]
B8C1R3_THAPS7.710e-7051.88Phenylalanine--tRNA ligase n=1 Tax=Thalassiosira p... [more]
A0A7S1UU01_9STRA4.130e-6850.63Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Gram... [more]
A0A7S4J9R1_9STRA4.600e-6852.52Phenylalanine--tRNA ligase n=2 Tax=Odontella aurit... [more]
A0A6A4YUU2_9STRA1.190e-6750.00Phenylalanine--tRNA ligase n=2 Tax=Aphanomyces Tax... [more]
K3WA38_GLOUD1.380e-6649.16Phenylalanine--tRNA ligase n=1 Tax=Globisporangium... [more]
A0A7S4ERJ0_9STRA1.410e-6652.12Phenylalanine--tRNA ligase n=1 Tax=Pseudo-nitzschi... [more]
A0A448YUG9_9STRA4.530e-6653.39Phenylalanine--tRNA ligase n=1 Tax=Pseudo-nitzschi... [more]
A0A7S0SRK0_9STRA7.120e-6651.07Phenylalanine--tRNA ligase n=1 Tax=Chromulina nebu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64359contigH-elongata_contig64359:92..3237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score338.6
Seed ortholog evalue2.3e-90
Seed eggNOG ortholog2880.D8LLA6
Preferred nameFARSA
KEGG rclassRC00055,RC00523
KEGG koko:K01889
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000122,GO:0002161,GO:0002181,GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051262,GO:0051290,GO:0051291,GO:0052689,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.phenylalanyl-tRNA aminoacylation
EggNOG OGsCOG0016@1,KOG2784@2759
EC6.1.1.20
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhenylalanine--tRNA ligase
Ec32 orthologEc-27_001900.1
Exons5
Model size705
Cds size678
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64359.14023.1prot_H-elongata_contig64359.14023.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64359 92..3210 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931029.4997313-CDS-H-elongata_contig64359:91..1511622931029.4997313-CDS-H-elongata_contig64359:91..151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64359 92..151 -
1691679668.456998-CDS-H-elongata_contig64359:91..1511691679668.456998-CDS-H-elongata_contig64359:91..151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64359 92..151 -
1622931029.5228462-CDS-H-elongata_contig64359:770..8811622931029.5228462-CDS-H-elongata_contig64359:770..881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64359 771..881 -
1691679668.476662-CDS-H-elongata_contig64359:770..8811691679668.476662-CDS-H-elongata_contig64359:770..881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64359 771..881 -
1622931029.5428329-CDS-H-elongata_contig64359:1218..14491622931029.5428329-CDS-H-elongata_contig64359:1218..1449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64359 1219..1449 -
1691679668.4858305-CDS-H-elongata_contig64359:1218..14491691679668.4858305-CDS-H-elongata_contig64359:1218..1449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64359 1219..1449 -
1622931029.5580833-CDS-H-elongata_contig64359:2027..22161622931029.5580833-CDS-H-elongata_contig64359:2027..2216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64359 2028..2216 -
1691679668.4936779-CDS-H-elongata_contig64359:2027..22161691679668.4936779-CDS-H-elongata_contig64359:2027..2216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64359 2028..2216 -
1622931029.5714753-CDS-H-elongata_contig64359:3123..32101622931029.5714753-CDS-H-elongata_contig64359:3123..3210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64359 3124..3210 -
1691679668.5073688-CDS-H-elongata_contig64359:3123..32101691679668.5073688-CDS-H-elongata_contig64359:3123..3210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64359 3124..3210 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931029.5851796-UTR-H-elongata_contig64359:3210..32371622931029.5851796-UTR-H-elongata_contig64359:3210..3237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64359 3211..3237 -
1691679668.521873-UTR-H-elongata_contig64359:3210..32371691679668.521873-UTR-H-elongata_contig64359:3210..3237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64359 3211..3237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64359.14023.1

>prot_H-elongata_contig64359.14023.1 ID=prot_H-elongata_contig64359.14023.1|Name=mRNA_H-elongata_contig64359.14023.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp
MRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIV
RGDNPGGSIPDTVRELLRKVAAGEALSEQQTKDLKRRKLITQVTRKSFMV
TRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLH
PLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFD
SLFQPQSHPARDAHDTFFIKDPESAL
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mRNA from alignment at H-elongata_contig64359:92..3237-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64359.14023.1 ID=mRNA_H-elongata_contig64359.14023.1|Name=mRNA_H-elongata_contig64359.14023.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3146bp|location=Sequence derived from alignment at H-elongata_contig64359:92..3237- (Himanthalia elongata Himel1 dioecious)
AAGGTGATCGAGAAAGGCTCCCCGGAGATGAGGGTCCTGGAGTGCGTCCC CGGAGGTACTGAGGGCATTAGCAAGAATAAGCTCGAGGGGGCCTTGGGTG CCGACCTTGTCAAGGTATTTTATAAGTCAATATTAGATAGAAAGATAATA GAGATTGCTCCAGTTAAACGTAATAATTTCCCGCTATTTTACTCTCCGCG GTGGGGCGGTGGCGAAGGTGGCTGGTTTGTTTCCGACAGCCGCCGGTAAA ACTGAACGCTGCTCCTCCGGATGGAATGGGATGGGATGGGATGTCCTCAC AGAACTTCCCTCGTTAGCGACATATTTCTTTTTCATTTTCCTTTCTTGTT TTGCTGGAATTTCCGCCGCATAGCTAGCAGCGCTCTTGGTTCTTGGCCTC GAAAGCGTATGCATCGCGTCTACGTCGTAAAAGTGGTAACTATAAGAGGA GACCGGGGATTTTGGGGAGGGGGGGGGGGGAAGAAGCTTTTGTGATTATG TGTTGACTAGGGTTCGTCCGTAGCGACACCTCTCTTTGCGGTGCGGTGAC GTTACAACTTTTGCGCACTCGACTTTTCCGGGTGCTCGTTGGGAGCTCGT CGAATGATATGGCTGTATGTGAGCGTGCTCCTGCGTTGTAGTCCCCTCCG GACATCTTCTTGAGATGCACCCCCTGCCTCCCTCCCTCCCTCCCCCGTCC TTACCCATAGACGCCTCCATACCTGCACGGTCGATCACTACCACAAGCGG GGAAAATATTTTAACAATATTAATTAGCTTTTCACAGCAATGGAGGGAAT GGGCGGGAGCACCTCACGGTTTCCGATATCGTAGCAAATTATGTAATCAA AAGGACCACGGACCTCCGTATGCACTTTTTATATTTTGTGGGGTTTTATG GTTCTCATCAAATGCGGGAAGAGATTGGGTGGTGGTCCATGACCAGGCGT CTGGTGTCTGGCGCTAATTCCCTCCCCATTTTCGTAACTCTCGACGCCCC TCCCCCTTCTACAAACCCCAGATCGGTCTGGGACAGTGCATGAAGAATAG GTGGGTTTCGAAGGGTGAGGGAGGCAGTATCGTACGAGGAGACAATCCGG GGGGATCAATTCCGGACACCGTTCGGGAGTTGCTAAGAAAGGTGGCGGCC GGGGAAGCGCTGAGCGAGCAGCAGACAAAGGACTTGAAGAGGAGAAAGCT CATCACGCAGGTGGCCCGTTCCAGCTGGTCAGGGAGGGGAGAGTCATTAT CTTTGCATGGCGCCGATTTGTCTTGGTTGCAGAGAGGAACGCCCGTCTCA GTCCTCGTGATTTATTTGCCGACCTAGAGTCGTCCTTCTGTCGCGGCGTG CGGGACATAAGCGCGAGCCTCGACTCCCTGGCGCGGGGACCGGAAGCGGG GTTCGGTCAAAAGGTGGTGTGGGTTGTATAATTCGACGTTAGCAGCAAGC TGGTTGCGCTCATTTCACCTCGGAGGGTTTGCAGGGAAGAGTAATGGTCA TACATCGCCCGCAGCCCTCGTGCAACCTGTTTTGCGGCTTTTTTTATCCC CTTATCATCATTACATTATCCTATATTATTATCTTAGCTGTCATAATCTT ATATTTTTATGAATAGTTACCGTATGGTGTATTGTTCATATTGCCGCGCC GCGCTGACGAGGCCATTTTATCCGGAAACAGGGTAATAGCTAGCAGTTGC AAATGCCTCGCGCCGCTCCAAAAGTAATTTTCCTGACTGGGTGGCTCCCT CTTGTCCGTCATGTTTTTTGGTGGTGTTGTCGCCAAAGGTGACGCGCAAG TCATTCATGGTGACCAGGGGCCCTTCCTACGCCGCGAGGAGGGTCAGGCG CCAGGCGGAGCTGACAAAGGAGATGCTGGCGACCGAGAGCTGGAAGGATT CCTCCTTCAAGGAGTACAACTTCAAGGCGCTCGGTGTGCCGTGCGGGGGC GGTAACCTTCATCCCCTCCTCAAGGCAAGGGGCGGCATTACTTCGCGGGG TGGCCTCGGACTGCCATTTGTCAATCCCTTTGATCCATCCCGCGTTGGCG CCTTCAGCCATTAGCGTTAATTCCCCACGCCTCCTCCCATCAGTCGGAAA AATACGCTAAAAAGCGTAATACACCGTGGCATCTGTAATGATTCACATCC ATCGCCACCCATCTCTCTCCCTCGCCTTTCTTTTTTTAATTTGGATTTGG AGAGTTAGACGGCCACAGGAAAGGTGGCTTCTTGCGGCGCGTTTATAGGA GGTCCAGTTGCACTTTCGAGGGCGACCGTTGCGAATGTAACGCCTCCGTA TATTTTTCATGCTTTCGGACAAGCTCCGCTTGAAAATCATTTTGTGCATT TGACAGGTCCGGGCCGAGTTCCGCAAAATTCTGATGTTCATGGGCTTCGA GGAGATGCCCACGAACCGCTGGGTGGAGAGCAGCTTCTGGAACTTCGACA GCCTTTTCCAACCGCAGGTGGGGGGAAATGCAAAGTATCATACTCTAGGA GGCGTTATGCTATCAGAGTATGACGCTTTTGGAAGATAGAATCATGAGAC CTTTGGACTATCGATTTTTTCCGCCTTCGGAGTATCGAATTATGACCTTT TCGGAATTTCGAGCTCTGGCACTTTCGGAGTATCGGGTTAATAACGTTTT GGAGGTGTTATCGGATTACTGTATGACCTTTTCGGAGTATCTGGTTAATA ACATTTCGGAGTATAGGATTACAGATCAAATCATGGTGGACTTTCGGGGT ATCGTAATGTTGCACCTTCGGAGCATTACACTTTCGAGGTGTGCCGTTAT CAAGAGGAGGGAGAGGTATCAGAGCACTACATTCAATTACTGTTTTTTGC GAAATCTACATACAGCAGCGATCCACGTCTGGACGCCTCAACATTCGCCT GTTGGCGTTTCTCTCGCGGGGGGTGGGACCTTCGAAACGCCTCATTTGCA GCCTCGTCATCGCCCCCCCCCCCCCCTTCTCCCCTCCGCTAACCTCGTGG CGCCCCACTCCTCTTTTCCCCTTGCTTGAACAAATATGTATATATATATT GTATATATTATGGAATTTGTGTGGTGCCTACGTTAGTCTCATCCAGCCAG GGATGCTCACGACACCTTCTTCATCAAGGATCCCGAGTCTGCGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig64359:92..3237-

>mRNA_H-elongata_contig64359.14023.1 ID=mRNA_H-elongata_contig64359.14023.1|Name=mRNA_H-elongata_contig64359.14023.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig64359:92..3237- (Himanthalia elongata Himel1 dioecious)
ATGAGGGTCCTGGAGTGCGTCCCCGGAGGTACTGAGGGCATTAGCAAGAA
TAAGCTCGAGGGGGCCTTGGGTGCCGACCTTGTCAAGATGAGGGTCCTGG
AGTGCGTCCCCGGAGGTACTGAGGGCATTAGCAAGAATAAGCTCGAGGGG
GCCTTGGGTGCCGACCTTGTCAAGATCGGTCTGGGACAGTGCATGAAGAA
TAGGTGGGTTTCGAAGGGTGAGGGAGGCAGTATCGTACGAGGAGACAATC
CGGGGGGATCAATTCCGGACACCGTTCGGGAGTTGCTAAGAAAGGTGGCG
GCCGGGGAAGCGCTGAGCGAGCAGCAGACAAAGGACTTGAAGAGGAGAAA
GCTCATCACGCAGATCGGTCTGGGACAGTGCATGAAGAATAGGTGGGTTT
CGAAGGGTGAGGGAGGCAGTATCGTACGAGGAGACAATCCGGGGGGATCA
ATTCCGGACACCGTTCGGGAGTTGCTAAGAAAGGTGGCGGCCGGGGAAGC
GCTGAGCGAGCAGCAGACAAAGGACTTGAAGAGGAGAAAGCTCATCACGC
AGGTGACGCGCAAGTCATTCATGGTGACCAGGGGCCCTTCCTACGCCGCG
AGGAGGGTCAGGCGCCAGGCGGAGCTGACAAAGGAGATGCTGGCGACCGA
GAGCTGGAAGGATTCCTCCTTCAAGGAGTACAACTTCAAGGCGCTCGGTG
TGCCGTGCGGGGGCGGTAACCTTCATCCCCTCCTCAAGGCAAGGGGCGGC
ATTACTTCGCGGGGTGGCCTCGGACTGCCATTTGTGACGCGCAAGTCATT
CATGGTGACCAGGGGCCCTTCCTACGCCGCGAGGAGGGTCAGGCGCCAGG
CGGAGCTGACAAAGGAGATGCTGGCGACCGAGAGCTGGAAGGATTCCTCC
TTCAAGGAGTACAACTTCAAGGCGCTCGGTGTGCCGTGCGGGGGCGGTAA
CCTTCATCCCCTCCTCAAGGCAAGGGGCGGCATTACTTCGCGGGGTGGCC
TCGGACTGCCATTTGTCCGGGCCGAGTTCCGCAAAATTCTGATGTTCATG
GGCTTCGAGGAGATGCCCACGAACCGCTGGGTGGAGAGCAGCTTCTGGAA
CTTCGACAGCCTTTTCCAACCGCAGGTCCGGGCCGAGTTCCGCAAAATTC
TGATGTTCATGGGCTTCGAGGAGATGCCCACGAACCGCTGGGTGGAGAGC
AGCTTCTGGAACTTCGACAGCCTTTTCCAACCGCAGTCTCATCCAGCCAG
GGATGCTCACGACACCTTCTTCATCAAGGATCCCGAGTCTGCGCTGTCTC
ATCCAGCCAGGGATGCTCACGACACCTTCTTCATCAAGGATCCCGAGTCT
GCGCTG
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