mRNA_H-elongata_contig64359.14023.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: D8LLA6_ECTSI (Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLA6_ECTSI) HSP 1 Score: 354 bits (908), Expect = 8.810e-118 Identity = 179/236 (75.85%), Postives = 197/236 (83.47%), Query Frame = 1
Query: 1 KVIEKGSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIVRGDNPG-GSIPDTVRELLRKVAAGEALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
+VIE+GSPEMRVLECVP G++GISK LE ALGAD+VKIGLGQCMKN+WV+KGEGG +VRG N G G++ D +ELL+KV GE L +QQ KDLKRRKL+TQVTRKSF VTRG SYA RRV+RQAELTKEMLA+ SWKD++FKEYNFK LG PCGGGNLHPLLK VR EFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDP SAL
Sbjct: 73 RVIEEGSPEMRVLECVPVGSDGISKAGLEAALGADVVKIGLGQCMKNKWVAKGEGGVLVRGANGGDGAVEDAAKELLKKVEGGETLGDQQAKDLKRRKLVTQVTRKSFKVTRGGSYAVRRVKRQAELTKEMLASGSWKDAAFKEYNFKTLGAPCGGGNLHPLLK---------------VRTEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPASAL 293
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: A0A835YKG3_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKG3_9STRA) HSP 1 Score: 260 bits (665), Expect = 3.190e-81 Identity = 138/239 (57.74%), Postives = 167/239 (69.87%), Query Frame = 1
Query: 1 KVIEKGSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIVRGDNPGGSIPDTVRELLRKV-AAG---EALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
+V GSPE +V + VP G GISK LE LGA LVKIG+G CMK W+ KG G++V+G + + DT ++ LR + AAG E+LS + K+LKRRK++TQ+ RKSF VTRG YA R ++ A+LT+EML + WK +SFKEYNF LG P GGG LHPLLK VRAEFR +LM MGFEEMPTNRWVESSFWNFD+LFQPQSHPARDAHDTFF+KDP A+
Sbjct: 71 EVAAYGSPEYQVWKAVPAGDAGISKADLEAQLGAPLVKIGMGACMKVGWLKKGPQGALVKGSD---DVRDTTQDKLRALEAAGGALESLSAEDAKELKRRKMVTQIMRKSFKVTRGAQYALERKKKTADLTREMLESGEWKTTSFKEYNFNTLGAPTGGGYLHPLLK---------------VRAEFRNVLMQMGFEEMPTNRWVESSFWNFDALFQPQSHPARDAHDTFFVKDPAQAV 291
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: B8C1R3_THAPS (Phenylalanine--tRNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1R3_THAPS) HSP 1 Score: 231 bits (589), Expect = 7.710e-70 Identity = 124/239 (51.88%), Postives = 156/239 (65.27%), Query Frame = 1
Query: 4 VIEKGSPEMRVLEC-VPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIVRGDNPGGSIPDTVRELLRKVAAG----EALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
++ GS E V+ + G +G+S L+ +G D+ KIG+G C+KN+W K + G +V + D V+ LL K+ G + L ++ LKRRKLIT VTRKS+ + RGPSYA +RV++ A+LTKE+L + WKD+ FKEYNF LG GGG LHPLLK VRAEFRKILM MGF EMPTN+WVESSFWNFDSLFQPQSHPARDAHDTFFIK+P +
Sbjct: 68 ILANGSQECIVIAALIAAGEDGLSMTDLQNGVGKDVCKIGMGNCLKNKWARKEKDGRLVAQVE---GVEDEVKVLLGKLKEGGGGADVLDDKAIAILKRRKLITLVTRKSYTIIRGPSYAPQRVKKAADLTKELLDSGKWKDTPFKEYNFATLGESVGGGYLHPLLK---------------VRAEFRKILMEMGFHEMPTNKWVESSFWNFDSLFQPQSHPARDAHDTFFIKEPAQTV 288
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: A0A7S1UU01_9STRA (Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UU01_9STRA) HSP 1 Score: 226 bits (575), Expect = 4.130e-68 Identity = 120/237 (50.63%), Postives = 160/237 (67.51%), Query Frame = 1
Query: 4 VIEKGSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIV---RGDNPGGSIPDTVRELLRKVAAGEALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
+++ GS E+ VL+ + + +S L+ +G D+ KIG+G CMK++W+ K +GG +V D+ S+ ++++L+ + + L E+ LKRRKL++ TRKS VT+G SYA +RV++ A+LTKEML + SWK ++FK YNF ALG GGG LHPLLK VRAEFRKILM MGF EMPTN+WVESSFWNFDSLFQPQSHPARDAHDTFFIK+P +
Sbjct: 50 IVKNGSQEIIVLKALVESGK-LSMPDLQAKVGKDVAKIGMGNCMKSKWIKK-DGGDLVPLKTMDDVTDSVQQSLKKLIESEGSVDTLDEKTLASLKRRKLVSLATRKSLKVTKGSSYAPKRVKKAADLTKEMLESGSWKTTTFKPYNFAALGEKVGGGYLHPLLK---------------VRAEFRKILMEMGFHEMPTNKWVESSFWNFDSLFQPQSHPARDAHDTFFIKEPAETV 269
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: A0A7S4J9R1_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J9R1_9STRA) HSP 1 Score: 226 bits (577), Expect = 4.600e-68 Identity = 125/238 (52.52%), Postives = 158/238 (66.39%), Query Frame = 1
Query: 4 VIEKGSPEMRVLEC-VPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIV---RGDNPGGSIPDTVRELLRKVAAGEALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
++E GSPE+ VL+ + G G+S L+G +G L KIG+G CMKN+W K +GG++V + D +++ L +AL + LK+RKL+T VT++S+ VTRG SYA RV++ ++LTKEML T +WK + FK YNF ALG GGG LHPLLK VRAEFRKILM MGF EMPT++WVESSFWNFDSLFQPQSHPARDAHDTFFIK+P S L
Sbjct: 70 ILENGSPEVAVLKVLIEAGEGGMSVGDLQGKVGKALCKIGMGNCMKNKWAKK-DGGNLVAIKKLDEVTDETQASLKALSDAQGNPDALGNKVVNALKKRKLVTLVTKRSYKVTRGASYAPVRVKKASDLTKEMLDTGAWKTTPFKPYNFLALGENVGGGYLHPLLK---------------VRAEFRKILMEMGFHEMPTDKWVESSFWNFDSLFQPQSHPARDAHDTFFIKEPASTL 291
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: A0A6A4YUU2_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6A4YUU2_9STRA) HSP 1 Score: 224 bits (572), Expect = 1.190e-67 Identity = 117/234 (50.00%), Postives = 156/234 (66.67%), Query Frame = 1
Query: 16 GSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIVRGDNPGGSIPDTVRELLRKVAAGEA----LSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
GSPE+++ +P T+G K LEGA+GA L K+ G CMKN+W+ + ++ + S+ DT E L++VAA + +S+ +KDLKRRKLI+ RKSF + +GP++A +R R+ A L K+ML +E WK FK YNF +G+ GGG+LHPL+K VRAEFR++LM MGF+EMPTNRWVESSFWNFD+LFQPQSHPARDAHDTFF+ P A+
Sbjct: 78 GSPEVQLFHAIPA-TDGADKATLEGAVGAALFKVAQGACMKNKWIRMDKATGLIYRNVA--SVEDTATEQLKQVAAVQGNVDHVSDNVSKDLKRRKLISLQVRKSFRIGKGPNFAVQRKRQAAGLNKDMLDSEEWKTEKFKPYNFNTMGLAVGGGHLHPLMK---------------VRAEFRRVLMDMGFDEMPTNRWVESSFWNFDALFQPQSHPARDAHDTFFLTTPAKAV 293
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: K3WA38_GLOUD (Phenylalanine--tRNA ligase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WA38_GLOUD) HSP 1 Score: 223 bits (567), Expect = 1.380e-66 Identity = 117/238 (49.16%), Postives = 158/238 (66.39%), Query Frame = 1
Query: 7 IEKGSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEG-GSIVRGDNPGGSIPDTVRELLRKVAAGE----ALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
+ KGSPE++V +P +EGI + LEG +GA +K+G G CMKNRW+ + G R S+ D E+LR++ + E A++ + K+LKRR LI TRKS+ +T+GP+++ +R ++ A L KEML ++WK +FK YNF LG+ GGG+LHPL+K VRAEFR++LM MGF+EMPTNR+VESSFWNFDSLFQPQSHPARDAHDTFF+ P+ L
Sbjct: 75 LAKGSPEVQVFHAIPA-SEGIDRATLEGVVGATTLKVGQGACMKNRWIRLDKADGKFYRNVE---SVVDEATEMLRRIESAEGALSAVTADEAKNLKRRNLIDVRTRKSYKITKGPNFSLQRKKQAAGLNKEMLEGDAWKRETFKPYNFNTLGLAVGGGHLHPLMK---------------VRAEFRRVLMDMGFQEMPTNRYVESSFWNFDSLFQPQSHPARDAHDTFFLTKPQKCL 293
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: A0A7S4ERJ0_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ERJ0_9STRA) HSP 1 Score: 223 bits (567), Expect = 1.410e-66 Identity = 123/236 (52.12%), Postives = 161/236 (68.22%), Query Frame = 1
Query: 4 VIEKGSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIV--RGDNPGGSIPDTVRELLRKVAAGEALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
++ GS E VL+ + + +S L+ +G D+ KIG+G CMK++W+ K +GG +V + D+ I D+V++LL + +A+ ++ KDLKRRKLI+ VT KS VTRGP YA +RV++ A+LTKEML + SW+ + +K YNF LG GGG LHPLLK VRAEFRKILM MGF+EMPTN+WVESSFWNFDSLFQPQSHPARDAHDTFFIK+P +
Sbjct: 71 IVANGSQEFIVLKALNEAGK-LSMGDLQAKVGKDVAKIGMGNCMKSKWIKK-DGGDLVALKKDD---EIEDSVQKLLLDL---KAIDDKIAKDLKRRKLISLVTLKSHKVTRGPQYAPKRVKKAADLTKEMLDSGSWETTEYKPYNFLVLGEKVGGGYLHPLLK---------------VRAEFRKILMEMGFQEMPTNKWVESSFWNFDSLFQPQSHPARDAHDTFFIKNPAETV 283
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: A0A448YUG9_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUG9_9STRA) HSP 1 Score: 229 bits (583), Expect = 4.530e-66 Identity = 126/236 (53.39%), Postives = 163/236 (69.07%), Query Frame = 1
Query: 4 VIEKGSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIV--RGDNPGGSIPDTVRELLRKVAAGEALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATESWKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDPESAL 705
V+ G+ E+ VL+ + + +S L+ +G D+ KIG+G CMK++W+ K EGG +V + D+ + DTV++LL + +A+ ++ KDLKRRKLIT VT+KS VTRGP YA +RV++ A+LTKEML + SW+ + FK YNF LG GGG LHPLLK VRAEFRKILM MGF+EMPTN+WVESSFWNFDSLFQPQSHPARDAHDTFFIK+P +
Sbjct: 71 VVANGAQEIIVLKALNEAGK-LSMGDLQAKVGKDVAKIGMGNCMKSKWIKK-EGGDLVALKKDD---EVEDTVQKLLLDL---KAIDDKTAKDLKRRKLITLVTQKSHKVTRGPQYAPQRVKKAADLTKEMLDSGSWETTEFKPYNFLVLGEKVGGGYLHPLLK---------------VRAEFRKILMEMGFQEMPTNKWVESSFWNFDSLFQPQSHPARDAHDTFFIKNPAETV 283
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Match: A0A7S0SRK0_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRK0_9STRA) HSP 1 Score: 221 bits (562), Expect = 7.120e-66 Identity = 119/233 (51.07%), Postives = 153/233 (65.67%), Query Frame = 1
Query: 16 GSPEMRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIVRGDNPGGSIPDTVRELLRKVAAGEALSEQQTKDLKRRKLITQVTRKSFMVTRGPSYAARRVRRQAELTKEMLATES-------WKDSSFKEYNFKALGVPCGGGNLHPLLKARGGITSRGGLGLPFVRAEFRKILMFMGFEEMPTNRWVESSFWNFDSLFQPQSHPARDAHDTFFIKDP 693
GSPE + + +P GI+ N+L+ +L ++VKIGLG CMKN+W+ K +G I+R I D R+L+ + A + LSE K+LK RKLI Q+T+K F + +G + RVR+ A+LTK+M+ ++ W D SFK N K++G P GGN HPLLK VRAEFR+ILM MGFEEMPTN+WVESSFWNFD+LFQPQSHPARDAHDTFFIKDP
Sbjct: 73 GSPEYILYQSIPIDN-GITLNQLQSSLNDEIVKIGLGPCMKNKWIKK-QGDLIIRVSTA--IINDDTRDLVNSILANQTLSEDNYKNLKNRKLIRQITKKYFRIIKGNDFREVRVRKLADLTKDMIGNKTEMAAGSHWSDLSFKSVNLKSMGAPVQGGNYHPLLK---------------VRAEFRRILMEMGFEEMPTNKWVESSFWNFDALFQPQSHPARDAHDTFFIKDP 286 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64359.14023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64359.14023.1 >prot_H-elongata_contig64359.14023.1 ID=prot_H-elongata_contig64359.14023.1|Name=mRNA_H-elongata_contig64359.14023.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp MRVLECVPGGTEGISKNKLEGALGADLVKIGLGQCMKNRWVSKGEGGSIVback to top mRNA from alignment at H-elongata_contig64359:92..3237- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64359.14023.1 ID=mRNA_H-elongata_contig64359.14023.1|Name=mRNA_H-elongata_contig64359.14023.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3146bp|location=Sequence derived from alignment at H-elongata_contig64359:92..3237- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64359:92..3237- >mRNA_H-elongata_contig64359.14023.1 ID=mRNA_H-elongata_contig64359.14023.1|Name=mRNA_H-elongata_contig64359.14023.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig64359:92..3237- (Himanthalia elongata Himel1 dioecious)back to top |