mRNA_H-elongata_contig63983.13984.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63983.13984.1
Unique NamemRNA_H-elongata_contig63983.13984.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 5.030e-35
Identity = 67/156 (42.95%), Postives = 104/156 (66.67%), Query Frame = 1
Query:   76 GGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
            GGG KL+ + D+D+ +    RRSVS G V   GG++SWFSR QK    +++E+EY AL ++V E+  LRQ+  FM P + +  I I+EDN+GAI++A+N  S+  ++H+D++HH +R+ +E   + V +V S  Q AD LTKS++  +FE H  F+
Sbjct:   68 GGGIKLAGYADADFASKAANRRSVSGGIVTCGGGSVSWFSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDSFESHREFV 223          
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.370e-33
Identity = 67/161 (41.61%), Postives = 102/161 (63.35%), Query Frame = 1
Query:   61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
             +RGT  G  L  + D+D+ +    RRSVS G V   GGA+SWFSR QK    +++E+EY AL E+V  +  LRQ+  FM P + +  I ++EDN+GAI++A+N  S+  ++H+D++HH +R+ +E   + V +V S  Q AD LTKS++   FE H  F+
Sbjct:   52 FQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFV 212          
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.450e-33
Identity = 64/161 (39.75%), Postives = 103/161 (63.98%), Query Frame = 1
Query:   61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
             RRG+  G  +  + D+DY +    RRSVS G VM  GG +SWFSR QK    +++E+EY +LA+++ E+  LRQV+ F+ P   +  I + EDN+GAI++A+N  S+  ++H+D++HH +R+ +    + + +V S  QHAD LTK++N   FE H  ++
Sbjct:   90 FRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYV 250          
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.420e-32
Identity = 66/161 (40.99%), Postives = 104/161 (64.60%), Query Frame = 1
Query:   61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
             RRG+  G  +  +VD+DY +    RRSVS G VM  GG ISWFSR QK    +++E+EY +LA+++ E+  LRQV  FM P   +  I ++EDN+GAI++A+N  S+  ++H+D++HH +R+ +    + + +V S  QHAD LTK+++   FE H  ++
Sbjct:  274 FRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 434          
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.430e-32
Identity = 70/161 (43.48%), Postives = 101/161 (62.73%), Query Frame = 1
Query:   61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
             +RGT  G  L  + D+D+ T    RRSVS G V   GGA+SWFSR QK    +++E+EY AL ++V E+  LRQ   FM P + +  I I+EDN+GAI++A+N  S+  ++HVD++HH+VR+ +E   + V +V    Q AD LTKS+    FE H  F+
Sbjct:  265 FQRGTVEGLSLQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHVPRRYQRADFLTKSLPKDAFESHREFV 425          
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5K7L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7L4_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.730e-32
Identity = 65/161 (40.37%), Postives = 100/161 (62.11%), Query Frame = 1
Query:   61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
             +RGT  G  L  + D+D+ +    RRSVS G V   GGA+SWFSR QK    +++E+EY +L + V E+  LRQ+  FM P + +  I I+EDN+GAI++A+N  S+  ++H+D++HH +R+ +E   +   +V S  Q AD L KS++   FE H  F+
Sbjct:   40 FQRGTVEGFSLQGYTDADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVSLGDAVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKAISAIHVPSPYQRADFLPKSLSEDAFESHRDFV 200          
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.190e-32
Identity = 66/161 (40.99%), Postives = 104/161 (64.60%), Query Frame = 1
Query:   61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
             RRG+  G  +  +VD+DY +    RRSVS G VM  GG ISWFSR QK    +++E+EY +LA+++ E+  LRQV  FM P   +  I ++EDN+GAI++A+N  S+  ++H+D++HH +R+ +    + + +V S  QHAD LTK+++   FE H  ++
Sbjct:  448 FRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 608          
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5KSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 8.340e-32
Identity = 67/161 (41.61%), Postives = 101/161 (62.73%), Query Frame = 1
Query:   61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
             +RGT  G  L  + D+D+ +    RRSVS G V   GGA+SWFS  QK    +++E+EY AL ++V E+  LRQ+  FM P + +  I I+EDN+GAI++A+N  S+  ++H+D++HH +R+ +E     V +V S  Q AD LTKS++   FE H  F+
Sbjct:  128 FQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSITQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGIPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVEREEFSVMHVPSPNQRADCLTKSLSKDAFESHRDFV 288          
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.020e-31
Identity = 69/173 (39.88%), Postives = 106/173 (61.27%), Query Frame = 1
Query:   25 ATFMAHSGPRDHLRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
            AT  A +  +   R GT     L  + D+D+ +    RRSVS G V   GGA+SWFSR QK    +++E+EY AL ++V E+  LRQ+  FM P + +  I ++EDN+GAI++A+N  S+  ++H+D++HH +R+ +E   + V +V S  Q AD LTKS++   FE H  F+
Sbjct:   85 ATAEAIAEQQGFARSGT-----LRGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFV 252          
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.970e-31
Identity = 67/161 (41.61%), Postives = 102/161 (63.35%), Query Frame = 1
Query:   61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
             +RGT  G  L  + D+D+ +    RRSVS G V   GGA+SWFSR QK    +++E+EY AL ++V E+  LRQ+  FM P + +  I ++EDN+GAI++A+N  S+  ++H+D++HH +R+ +E   + V +V S  Q AD LTKS+    FE H  F+
Sbjct:  298 FQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFV 458          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIJ7_9PHAE5.030e-3542.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ8_9PHAE2.370e-3341.61Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTK6_9PHAE3.450e-3339.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE1.420e-3240.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L8D6_9PHAE2.430e-3243.48Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7L4_9PHAE2.730e-3240.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB8_9PHAE7.190e-3240.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSZ5_9PHAE8.340e-3241.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWJ4_9PHAE1.020e-3139.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG2_9PHAE1.970e-3141.61Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63983contigH-elongata_contig63983:467..1006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue5.6e-23
Seed eggNOG ortholog67593.Physo133508
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931025.6269345-CDS-H-elongata_contig63983:466..10061622931025.6269345-CDS-H-elongata_contig63983:466..1006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63983 467..1006 +
1691679666.836953-CDS-H-elongata_contig63983:466..10061691679666.836953-CDS-H-elongata_contig63983:466..1006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63983 467..1006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63983.13984.1prot_H-elongata_contig63983.13984.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63983 467..1006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63983.13984.1

>prot_H-elongata_contig63983.13984.1 ID=prot_H-elongata_contig63983.13984.1|Name=mRNA_H-elongata_contig63983.13984.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
LKGSPESAATFMAHSGPRDHLRRGTGGGTKLSAWVDSDYGTCPDTRRSVS
EGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFM
TPPIDVAIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVH
VEYVRSGAQHADILTKSVNVKTFEKHARFL
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mRNA from alignment at H-elongata_contig63983:467..1006+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63983.13984.1 ID=mRNA_H-elongata_contig63983.13984.1|Name=mRNA_H-elongata_contig63983.13984.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=540bp|location=Sequence derived from alignment at H-elongata_contig63983:467..1006+ (Himanthalia elongata Himel1 dioecious)
CTGAAGGGCAGCCCAGAAAGCGCTGCAACATTTATGGCGCACTCGGGACC TCGGGACCATCTACGGAGGGGAACCGGGGGGGGGACTAAGTTATCAGCGT GGGTCGACTCAGACTACGGCACCTGCCCGGACACGCGTCGCTCAGTGTCG GAGGGGGCGGTGATGATGGCTGGCGGGGCCATTAGTTGGTTCTCACGAGT GCAAAAAGTAACGGCGGCGGCGTCGTCCGAATCGGAATACTTCGCGCTGG CTGAGATGGTAAACGAGTTGCGTCCCCTACGGCAGGTCAAGGAGTTTATG ACTCCCCCAATCGACGTCGCCATCAAGATATACGAGGACAACGAAGGTGC AATCAAGATGGCGAGAAACCGCTTCAGCAGTCGACGAACGAGGCACGTGG ATATTAAGCATCACATTGTCCGCGACGCGATCGAGGGGGGGTTGGTTCAC GTAGAATACGTTCGGTCCGGGGCACAGCACGCCGACATCCTCACGAAGTC CGTAAACGTCAAGACATTCGAAAAGCACGCAAGATTCCTT
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Coding sequence (CDS) from alignment at H-elongata_contig63983:467..1006+

>mRNA_H-elongata_contig63983.13984.1 ID=mRNA_H-elongata_contig63983.13984.1|Name=mRNA_H-elongata_contig63983.13984.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig63983:467..1006+ (Himanthalia elongata Himel1 dioecious)
CTGAAGGGCAGCCCAGAAAGCGCTGCAACATTTATGGCGCACTCGGGACC
TCGGGACCATCTACGGAGGGGAACCGGGGGGGGGACTAAGTTATCAGCGT
GGGTCGACTCAGACTACGGCACCTGCCCGGACACGCGTCGCTCAGTGTCG
GAGGGGGCGGTGATGATGGCTGGCGGGGCCATTAGTTGGTTCTCACGAGT
GCAAAAAGTAACGGCGGCGGCGTCGTCCGAATCGGAATACTTCGCGCTGG
CTGAGATGGTAAACGAGTTGCGTCCCCTACGGCAGGTCAAGGAGTTTATG
ACTCCCCCAATCGACGTCGCCATCAAGATATACGAGGACAACGAAGGTGC
AATCAAGATGGCGAGAAACCGCTTCAGCAGTCGACGAACGAGGCACGTGG
ATATTAAGCATCACATTGTCCGCGACGCGATCGAGGGGGGGTTGGTTCAC
GTAGAATACGTTCGGTCCGGGGCACAGCACGCCGACATCCTCACGAAGTC
CGTAAACGTCAAGACATTCGAAAAGCACGCAAGATTCCTTCTGAAGGGCA
GCCCAGAAAGCGCTGCAACATTTATGGCGCACTCGGGACCTCGGGACCAT
CTACGGAGGGGAACCGGGGGGGGGACTAAGTTATCAGCGTGGGTCGACTC
AGACTACGGCACCTGCCCGGACACGCGTCGCTCAGTGTCGGAGGGGGCGG
TGATGATGGCTGGCGGGGCCATTAGTTGGTTCTCACGAGTGCAAAAAGTA
ACGGCGGCGGCGTCGTCCGAATCGGAATACTTCGCGCTGGCTGAGATGGT
AAACGAGTTGCGTCCCCTACGGCAGGTCAAGGAGTTTATGACTCCCCCAA
TCGACGTCGCCATCAAGATATACGAGGACAACGAAGGTGCAATCAAGATG
GCGAGAAACCGCTTCAGCAGTCGACGAACGAGGCACGTGGATATTAAGCA
TCACATTGTCCGCGACGCGATCGAGGGGGGGTTGGTTCACGTAGAATACG
TTCGGTCCGGGGCACAGCACGCCGACATCCTCACGAAGTCCGTAAACGTC
AAGACATTCGAAAAGCACGCAAGATTCCTT
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