mRNA_H-elongata_contig63983.13984.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE) HSP 1 Score: 131 bits (330), Expect = 5.030e-35 Identity = 67/156 (42.95%), Postives = 104/156 (66.67%), Query Frame = 1
Query: 76 GGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
GGG KL+ + D+D+ + RRSVS G V GG++SWFSR QK +++E+EY AL ++V E+ LRQ+ FM P + + I I+EDN+GAI++A+N S+ ++H+D++HH +R+ +E + V +V S Q AD LTKS++ +FE H F+
Sbjct: 68 GGGIKLAGYADADFASKAANRRSVSGGIVTCGGGSVSWFSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDSFESHREFV 223
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE) HSP 1 Score: 127 bits (318), Expect = 2.370e-33 Identity = 67/161 (41.61%), Postives = 102/161 (63.35%), Query Frame = 1
Query: 61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
+RGT G L + D+D+ + RRSVS G V GGA+SWFSR QK +++E+EY AL E+V + LRQ+ FM P + + I ++EDN+GAI++A+N S+ ++H+D++HH +R+ +E + V +V S Q AD LTKS++ FE H F+
Sbjct: 52 FQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFV 212
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 128 bits (322), Expect = 3.450e-33 Identity = 64/161 (39.75%), Postives = 103/161 (63.98%), Query Frame = 1
Query: 61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
RRG+ G + + D+DY + RRSVS G VM GG +SWFSR QK +++E+EY +LA+++ E+ LRQV+ F+ P + I + EDN+GAI++A+N S+ ++H+D++HH +R+ + + + +V S QHAD LTK++N FE H ++
Sbjct: 90 FRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYV 250
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.420e-32 Identity = 66/161 (40.99%), Postives = 104/161 (64.60%), Query Frame = 1
Query: 61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
RRG+ G + +VD+DY + RRSVS G VM GG ISWFSR QK +++E+EY +LA+++ E+ LRQV FM P + I ++EDN+GAI++A+N S+ ++H+D++HH +R+ + + + +V S QHAD LTK+++ FE H ++
Sbjct: 274 FRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 434
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.430e-32 Identity = 70/161 (43.48%), Postives = 101/161 (62.73%), Query Frame = 1
Query: 61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
+RGT G L + D+D+ T RRSVS G V GGA+SWFSR QK +++E+EY AL ++V E+ LRQ FM P + + I I+EDN+GAI++A+N S+ ++HVD++HH+VR+ +E + V +V Q AD LTKS+ FE H F+
Sbjct: 265 FQRGTVEGLSLQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHVPRRYQRADFLTKSLPKDAFESHREFV 425
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5K7L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7L4_9PHAE) HSP 1 Score: 124 bits (310), Expect = 2.730e-32 Identity = 65/161 (40.37%), Postives = 100/161 (62.11%), Query Frame = 1
Query: 61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
+RGT G L + D+D+ + RRSVS G V GGA+SWFSR QK +++E+EY +L + V E+ LRQ+ FM P + + I I+EDN+GAI++A+N S+ ++H+D++HH +R+ +E + +V S Q AD L KS++ FE H F+
Sbjct: 40 FQRGTVEGFSLQGYTDADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVSLGDAVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKAISAIHVPSPYQRADFLPKSLSEDAFESHRDFV 200
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 130 bits (326), Expect = 7.190e-32 Identity = 66/161 (40.99%), Postives = 104/161 (64.60%), Query Frame = 1
Query: 61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
RRG+ G + +VD+DY + RRSVS G VM GG ISWFSR QK +++E+EY +LA+++ E+ LRQV FM P + I ++EDN+GAI++A+N S+ ++H+D++HH +R+ + + + +V S QHAD LTK+++ FE H ++
Sbjct: 448 FRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 608
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5KSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ5_9PHAE) HSP 1 Score: 125 bits (313), Expect = 8.340e-32 Identity = 67/161 (41.61%), Postives = 101/161 (62.73%), Query Frame = 1
Query: 61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
+RGT G L + D+D+ + RRSVS G V GGA+SWFS QK +++E+EY AL ++V E+ LRQ+ FM P + + I I+EDN+GAI++A+N S+ ++H+D++HH +R+ +E V +V S Q AD LTKS++ FE H F+
Sbjct: 128 FQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSITQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGIPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVEREEFSVMHVPSPNQRADCLTKSLSKDAFESHRDFV 288
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.020e-31 Identity = 69/173 (39.88%), Postives = 106/173 (61.27%), Query Frame = 1
Query: 25 ATFMAHSGPRDHLRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
AT A + + R GT L + D+D+ + RRSVS G V GGA+SWFSR QK +++E+EY AL ++V E+ LRQ+ FM P + + I ++EDN+GAI++A+N S+ ++H+D++HH +R+ +E + V +V S Q AD LTKS++ FE H F+
Sbjct: 85 ATAEAIAEQQGFARSGT-----LRGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFV 252
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 127 bits (319), Expect = 1.970e-31 Identity = 67/161 (41.61%), Postives = 102/161 (63.35%), Query Frame = 1
Query: 61 LRRGTGGGTKLSAWVDSDYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSESEYFALAEMVNELRPLRQVKEFMTPPIDV-AIKIYEDNEGAIKMARNRFSSRRTRHVDIKHHIVRDAIEGGLVHVEYVRSGAQHADILTKSVNVKTFEKHARFL 540
+RGT G L + D+D+ + RRSVS G V GGA+SWFSR QK +++E+EY AL ++V E+ LRQ+ FM P + + I ++EDN+GAI++A+N S+ ++H+D++HH +R+ +E + V +V S Q AD LTKS+ FE H F+
Sbjct: 298 FQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFV 458 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63983.13984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig63983.13984.1 >prot_H-elongata_contig63983.13984.1 ID=prot_H-elongata_contig63983.13984.1|Name=mRNA_H-elongata_contig63983.13984.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp LKGSPESAATFMAHSGPRDHLRRGTGGGTKLSAWVDSDYGTCPDTRRSVSback to top mRNA from alignment at H-elongata_contig63983:467..1006+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig63983.13984.1 ID=mRNA_H-elongata_contig63983.13984.1|Name=mRNA_H-elongata_contig63983.13984.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=540bp|location=Sequence derived from alignment at H-elongata_contig63983:467..1006+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig63983:467..1006+ >mRNA_H-elongata_contig63983.13984.1 ID=mRNA_H-elongata_contig63983.13984.1|Name=mRNA_H-elongata_contig63983.13984.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig63983:467..1006+ (Himanthalia elongata Himel1 dioecious)back to top |