mRNA_H-elongata_contig63951.13981.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig63951.13981.1 vs. uniprot
Match: A0A6H5KH01_9PHAE (CHAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH01_9PHAE) HSP 1 Score: 153 bits (386), Expect = 1.480e-39 Identity = 88/210 (41.90%), Postives = 119/210 (56.67%), Query Frame = 3
Query: 3 HGDDQQMLFENEEPFQCGMAKPLDVDATKNLFGPGTTKPDLVLLKSRVSRAHGRALVEAGVPHVVAVESEEEITD--INIFFDDFYHALIVQ--KMTIKDAFDFAVGT-------EAPQKKN--LLPDGGNHQVKIFNDIAAGKFVNETPELPPMLGLPKARGQYFGPKEFQKTVNLLQDPGIRCVSIVGERGIGKTERMVQACHYAGAR 593
HG+++ + FE+ + CG+ +PL V KNLF G + +LV + S S A G A V+AGVPHVVAV+ EE +TD F FY AL+ + T++ AFD A+ T PQ + LLP GGNH V+IF+ + G FV+ET E P + Y G +E QK V +L DP CV++ GE G GK+ER +QAC Y R
Sbjct: 98 HGNNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVQTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGSFTVQQAFDIALNTVNAHPPYARPQGDHFLLLPHGGNHDVRIFDTLPEGSFVDETREPPARPRCARPVPFYQGLEELQKVVEMLVDPVTACVTVTGEHGSGKSERAIQACDYVRMR 307
BLAST of mRNA_H-elongata_contig63951.13981.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI) HSP 1 Score: 116 bits (291), Expect = 1.080e-26 Identity = 72/179 (40.22%), Postives = 99/179 (55.31%), Query Frame = 3
Query: 3 HGDDQQMLFENEEPFQCGMAKPLDVDATKNLFGPGTTKPDLVLLKSRVSRAHGRALVEAGVPHVVAVESEEEITD--INIFFDDFYHALIVQ--KMTIKDAFDFAVGT-------EAPQKKN--LLPDGGNHQVKIFNDIAAGKFVNETPELPPMLGLPKARGQYFGPKEFQKTVNLLQ 500
HG ++ + FE+ + CG+ +PL V KNLF G + +LV + S S A G A V+AGVPHVVAV+ EE +TD F FY AL+ + + T+K AFD A+ T PQ + LLP GGNH V+IF+ + G+FV+ET E P AR + P F + + LQ
Sbjct: 41 HGSNEFLAFESNDDRMCGIMEPLHVGPLKNLFQAGGVRTELVFISSCSSEASGNAFVDAGVPHVVAVKREESVTDQAAQQFAKQFYDALLSEAGRFTVKQAFDIALNTVNAHPPHARPQGDHFLLLPHGGNHDVRIFDTLPEGRFVDETRE-------PPARPRCARPVPFYQGLEELQ 212
BLAST of mRNA_H-elongata_contig63951.13981.1 vs. uniprot
Match: D8LEZ2_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ2_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 3.670e-16 Identity = 57/175 (32.57%), Postives = 96/175 (54.86%), Query Frame = 3
Query: 99 GPGTTKPDLVLLKSRVSRAHGRALVEAGVPHVVAVESEEEITDINIF-FDDFYHALIVQKMTIKDAFDFAV----GTEAPQKKN---LLPDGGNHQVKIFNDIAAGKFVNETPELPPMLGLPKARGQYFGPK--EFQKTVNLLQDPGIRCVSIVGERGIGKTERMVQACHYAGAR 593
G T LV L S S++ + +EAGV HV+AV+ + ++ D F ++A +++ T++ AF G++ P++ + LLP G+H + +F ++ G+FV+ TP PP A QYF + + QK V + G+ CV+I G++GIGKT+ +++AC Y R
Sbjct: 75 GAPRTGLQLVFLSSCHSQSVAKCFIEAGVRHVIAVKKDSKVLDHKAAEFAKSFYASLLRGDTVRRAFLLGSACLEGSDQPEEGHKFLLLPPEGDHDIPVFEEVPDGQFVDATPLKPPYRC--DAVTQYFWGRAVDVQKVVKHMVS-GVPCVTITGQKGIGKTQVLLKACAYTRER 246
BLAST of mRNA_H-elongata_contig63951.13981.1 vs. uniprot
Match: A0A6H5JKN2_9PHAE (CHAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN2_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 6.450e-16 Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 3
Query: 6 GDDQQMLFENEEPFQCGMAKPLDVDATKNLFGPGTTKPDLVLLKSRVSRAHGRALVEAGVPHVVAVESEEEITDINI--FFDDFYHALIVQ--KMTIKDAFDFAV 308
G+D+ + FE+ + CG+ +PL+V + KNLF G + +LV + S S GRA VEAGVPHVVAV+ E +TD F FY AL+ + T+K AFD A+
Sbjct: 76 GNDKYLAFESGRDWNCGIMEPLEVASLKNLFQAGGVRTELVFISSCSSEMSGRACVEAGVPHVVAVKHEANVTDEEALHFSTVFYDALLENGGRYTVKQAFDIAL 180
BLAST of mRNA_H-elongata_contig63951.13981.1 vs. uniprot
Match: X6NSJ4_RETFI (CHAT domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NSJ4_RETFI) HSP 1 Score: 83.6 bits (205), Expect = 3.360e-15 Identity = 65/215 (30.23%), Postives = 100/215 (46.51%), Query Frame = 3
Query: 3 HGDDQQMLFENEEPFQCGMAKPLDVDATKNLFGPGTTKPDLVLLKSRVSRAHGRALVEAGVPHVVAVESEEEITD--INIFFDDFYHALIVQKMTIKDAFD--------FAVGTEAPQKKNLL----PDGGNHQVKIF--NDIAAGKFVNETPELPPMLGLPKARGQYFGPK-EFQKTVNLLQDPGIRCVSIVGERGIGKTERMVQACHYAGARG 596
HG Q ++FEN P G + D + P+LV + S S G+ V+AG+ HVVAVE++ E D F + FYH+L+ I DAF A ++ +KK +L P G H+VK+F + + +G+ V+++ LPP LP + + + + L D G++ V + G GIGK+ V Y RG
Sbjct: 423 HGMSQSLIFEN--PKNIGTDHSVSCDVIRRACRDAKHGPELVFVCSNHSEIVGKTFVDAGIKHVVAVETDFETADDAATEFTNHFYHSLL-NGYEIIDAFKQAKNAVVGLAGSSKQDEKKFVLLPLDPSGRLHRVKVFRHDQLVSGQLVDDSLPLPPN-NLPPPISHFINRNVDMARVIEHLLDSGVKIVDLTGGEGIGKSAVAVMTARYLCYRG 633
BLAST of mRNA_H-elongata_contig63951.13981.1 vs. uniprot
Match: X6P3P9_RETFI (CHAT domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6P3P9_RETFI) HSP 1 Score: 75.5 bits (184), Expect = 2.030e-12 Identity = 64/226 (28.32%), Postives = 99/226 (43.81%), Query Frame = 3
Query: 3 HGDDQQMLFENEEPFQCGMAKPLDVDATKNLFGPGTTKPDLVLLKSRVSRA----------------HGRALVEAGVPHVVAVESEEEITD--INIFFDDFYHALIVQKMTIKDAFDFA---------VGTEAPQKKNLLPDGGN---HQVKIFND--IAAGKFVNETPELPPMLGLPKARGQYFGPK-EFQKTVNLLQDPGIRCVSIVGERGIGKTERMVQACHY 581
HG Q ++FEN P G + D P+LV+ + S G+A VEAG+ HV+AV++E E+ D + F + FYH+L+ TI DAF A VG + +K LLP N H VK+F + G ++++ LPP LP + G + K + + D G++ V ++G G+GK+ + Y
Sbjct: 244 HGMPQSLVFEN--PKNLGFDHSVSCDLIGRACRDAKYGPELVVASACHSEVVGKLFXXXXXXXXXXXGGKAFVEAGIKHVIAVKTEFELNDDAASEFTNHFYHSLLTGN-TILDAFKHAKNAVTGMPGVGKQDEKKFVLLPIDPNDRIHNVKLFRPGGLPKGDLIDDSTPLPPN-NLPPPVSNFMGRNADMVKLIQPIVDNGVKMVGLMGPEGVGKSALAIMTARY 465
BLAST of mRNA_H-elongata_contig63951.13981.1 vs. uniprot
Match: A0A6A7FYI7_9CRUS (Sh2 domain containing protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FYI7_9CRUS) HSP 1 Score: 72.4 bits (176), Expect = 2.290e-11 Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = 3
Query: 111 TKPDLVLLKSRVSRAHGRALVEAGVPHVVAVESEEEITDIN--IFFDDFYHALIVQKMTIKDAFDFAVGTEAPQKK-----------NLLPDGGNHQVKIFNDIAAGKFVNETPELPPMLGLPKARGQYFGPKEFQKTVNLLQDPGIRCVSIVGERGIGKTERMVQACHYA 584
+K V + + S G A AGVPHVVAV + ++D IFF FY +L++ + T++ + + VG A + LLP G+H V IF DI G + + TP P M +P+ + G ++ + + R V++ GE GIGKT ++ HYA
Sbjct: 229 SKLRFVFVSACRSEDAGMAFAAAGVPHVVAVRWDSNVSDSASLIFFKSFYLSLLLGR-TVE--YSYHVGKVAVDNRPNSVYLEGDRFRLLPTDGDHNVPIFKDIENGDWQDVTPPAPNM-SIPQIPEHFVG-RDLETQFVFKRICKHRLVTLTGEPGIGKTTVVIAVAHYA 394
BLAST of mRNA_H-elongata_contig63951.13981.1 vs. uniprot
Match: X6N8W8_RETFI (CHAT domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6N8W8_RETFI) HSP 1 Score: 71.6 bits (174), Expect = 4.570e-11 Identity = 50/158 (31.65%), Postives = 81/158 (51.27%), Query Frame = 3
Query: 159 GRALVEAGVPHVVAVESEEEITD--INIFFDDFYHALIVQKMTIKDAFDFA---------VGTEAPQKKNLLP---DGGNHQVKIF--NDIAAGKFVNETPELPPMLGLPKARGQYFGPK-EFQKTVNLLQDPGIRCVSIVGERGIGKTERMVQACHY 581
G+A VEAG+ HV+AV++E E+ D + F + FYH L+ TI DAF A VG + K LLP G H+V +F + G+ +N++ LPP LP + G + K + + + G++ V+++G +G+GK+ + Y
Sbjct: 593 GKAFVEAGIKHVIAVKTEFELNDDAASEFTNHFYHGLL-NGYTILDAFKQAKNAVNGMAGVGKQDEDKFVLLPVDPSGTLHKVTLFPHGKLVQGELINDSVALPPN-NLPPPIPHFLGRSVDMVKVIQPIVESGVKIVNLMGSQGVGKSALALMTARY 748
BLAST of mRNA_H-elongata_contig63951.13981.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 4.990e-10 Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 3
Query: 6 GDDQQMLFENEEPFQCGMAKPLDVDATKNLFGPGTTKPDLVLLKSRVSRAHGRALVEAGVPHVVAVESEEEIT----DINIF 239
G+D+ + FE+ + CG+ +PL+V + NLF G + +LV + S S GRA VEAGVPHVVAV+ + +T D+ IF
Sbjct: 38 GNDKYLAFESGRDWNCGIMEPLEVASLSNLFQAGGVRTELVFISSCSSEMSGRACVEAGVPHVVAVKHKANVTGGNHDVRIF 119
BLAST of mRNA_H-elongata_contig63951.13981.1 vs. uniprot
Match: A0A7S1UA55_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UA55_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 4.730e-9 Identity = 64/227 (28.19%), Postives = 99/227 (43.61%), Query Frame = 3
Query: 3 HGDDQQMLFENEEPFQCGMAKPLDVDATKNLFG--PGTTKPDLVLLKSRVSRAHGRALVEAGVPHVVAVESEEEITD--INIFFDDFYHALIVQKMTIKDAFDF-------------------AVGTEAPQKKNLL--PDGGNHQVKIF--NDIAAGKFVNETPELPPML---GLPKARGQYFGPKEFQKTVNLLQDPGIRCVSIVGERGIGKTERMVQACHYAGAR 593
HG D + E+P G L + FG G ++P LV + + S + GRA V+AG+ HVVAV+ + ++D +F +FY +L+ T++ AFD A G ++ LL P G +H IF + G + +ETP P L G K G+ + E + + L+ C + G++G GKT + A YA R
Sbjct: 69 HGADDLLCL--EKPGATGEPHFLTSASLAAYFGGAAGVSRPKLVFVSACSSESAGRAFVDAGIAHVVAVQQGDRLSDEDARLFAGEFYLSLLTGH-TVRQAFDAGRACVDISRTSANPSGAGRAGGAPGEPERFLLLGPPGADHGEVIFPLGALRVGPYADETPPAPLNLCDRGPSKLIGRRW---ELHRLLEKLRSSA--CCIVEGKKGQGKTALAICAADYAARR 287 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63951.13981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig63951.13981.1 >prot_H-elongata_contig63951.13981.1 ID=prot_H-elongata_contig63951.13981.1|Name=mRNA_H-elongata_contig63951.13981.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp MLFENEEPFQCGMAKPLDVDATKNLFGPGTTKPDLVLLKSRVSRAHGRALback to top mRNA from alignment at H-elongata_contig63951:1284..3418+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig63951.13981.1 ID=mRNA_H-elongata_contig63951.13981.1|Name=mRNA_H-elongata_contig63951.13981.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2135bp|location=Sequence derived from alignment at H-elongata_contig63951:1284..3418+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig63951:1284..3418+ >mRNA_H-elongata_contig63951.13981.1 ID=mRNA_H-elongata_contig63951.13981.1|Name=mRNA_H-elongata_contig63951.13981.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig63951:1284..3418+ (Himanthalia elongata Himel1 dioecious)back to top |