mRNA_H-elongata_contig118098.1398.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: A0A1Y1IK20_KLENI (DUF659 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK20_KLENI) HSP 1 Score: 66.2 bits (160), Expect = 5.710e-11 Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRHSGDRGLLLPNDTRFGTSFITVERLSSV 219
C A +DL ++DV + W T + + KFI +H KT+A++++HS D LL P DTRF TSFIT+ERL V
Sbjct: 292 CVAHGMDLALEDVGKEEWVSPTLKAARDLVKFITNHHKTIALFRQHS-DLELLKPGDTRFATSFITLERLLEV 363
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: A0A388K744_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K744_CHABU) HSP 1 Score: 55.1 bits (131), Expect = 5.000e-7 Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRHSGDRGLLLPNDTRFGTSFITVERL 210
CAA ++LL++D+V P+ + T K KF+++ Q TLA++K L P TRFGTS++ +ERL
Sbjct: 62 CAAHCLNLLLRDIVAQPFARQTMRDAHKIVKFMRNKQNTLALHKIMKKALVLKRPVKTRFGTSYVMLERL 131
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: A0A388MBJ4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MBJ4_CHABU) HSP 1 Score: 54.7 bits (130), Expect = 6.870e-7 Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 1
Query: 1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRHSGDRGLLLPNDTRFGTSFITVERL 210
CAA + LL++D+ P+ + T +K KFI + QKTLA++K L P TRFGT+++ +ERL
Sbjct: 164 CAAHCLSLLLRDIAAQPFARQTMRDAQKIVKFICNKQKTLALHKIMKKALVLRRPTKTRFGTTYLMLERL 233
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: A0A015KZ91_RHIIW (BED-type domain-containing protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015KZ91_RHIIW) HSP 1 Score: 52.4 bits (124), Expect = 4.440e-6 Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAV---YKRHSGDR--GLLLPNDTRFGTSFITVERL 210
C A ++LLI D++++PW ST + KK K+ K HQ AV Y+R S D+ L LP TR+G+S I + L
Sbjct: 266 CVAHSLNLLIGDIMKLPWADSTIKNGKKIVKYFKSHQIPAAVLKRYQRSSYDKQISLKLPVKTRWGSSAICLNSL 340
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: UPI000900DA12 (uncharacterized protein LOC104738381 n=2 Tax=Camelina sativa TaxID=90675 RepID=UPI000900DA12) HSP 1 Score: 51.6 bits (122), Expect = 8.310e-6 Identity = 23/70 (32.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRHSGDRGLLLPNDTRFGTSFITVERL 210
CAA I+L+++DVV++P+ + K F+ +H+ TL ++ G + ++ P +TRF T+FI ++ L
Sbjct: 268 CAAHCINLILEDVVKLPFVHNLVHRMSKVTIFVYNHKSTLNWVRKRPGWKEIIRPGETRFATNFIALQSL 337
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: A0A388KP53_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KP53_CHABU) HSP 1 Score: 51.2 bits (121), Expect = 1.150e-5 Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = 1
Query: 1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRHSGDRGLLLPNDTRFGTSFITVERL 210
CA+ + LL++D+ PW + K KF+ + Q+ LA++K L P +TRFGT+F+ +ERL
Sbjct: 273 CASYWLSLLVRDIAAQPWAATVMRKGHKLVKFMHNKQRALALHKTMRNALVLKRPAETRFGTTFMMLERL 342
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: A0A2Z6S2F6_9GLOM (Uncharacterized protein n=4 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6S2F6_9GLOM) HSP 1 Score: 50.1 bits (118), Expect = 2.910e-5 Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1
Query: 1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRH---SGDR--GLLLPNDTRFGTSFITVERL 210
C A ++LLI D++++PW T + KK K+ K HQ A+ KR+ + DR L LP TR+G+S I + L
Sbjct: 271 CVAHSLNLLIGDIMKLPWADRTMKNGKKIVKYFKSHQVPAAILKRYQLSNYDRRISLKLPVKTRWGSSAICLNSL 345
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: A0A388JQR0_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JQR0_CHABU) HSP 1 Score: 49.7 bits (117), Expect = 4.010e-5 Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 1
Query: 1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRHSGDRGLLLPNDTRFGTSFITVERL 210
CA + LL++D+ P + T K KF+++ QK L ++K L L DTRFGTS++ +ERL
Sbjct: 415 CATQCLSLLLRDIAAQPIERQTMKDAHKIVKFMRNKQKALILHKVMKKAMVLKLLADTRFGTSYMMLERL 484 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig118098.1398.1 >prot_H-elongata_contig118098.1398.1 ID=prot_H-elongata_contig118098.1398.1|Name=mRNA_H-elongata_contig118098.1398.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRHSGDRback to top mRNA from alignment at H-elongata_contig118098:259..483- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig118098.1398.1 ID=mRNA_H-elongata_contig118098.1398.1|Name=mRNA_H-elongata_contig118098.1398.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig118098:259..483- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig118098:259..483- >mRNA_H-elongata_contig118098.1398.1 ID=mRNA_H-elongata_contig118098.1398.1|Name=mRNA_H-elongata_contig118098.1398.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig118098:259..483- (Himanthalia elongata Himel1 dioecious)back to top |