mRNA_H-elongata_contig118098.1398.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118098.1398.1
Unique NamemRNA_H-elongata_contig118098.1398.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: A0A1Y1IK20_KLENI (DUF659 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK20_KLENI)

HSP 1 Score: 66.2 bits (160), Expect = 5.710e-11
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRHSGDRGLLLPNDTRFGTSFITVERLSSV 219
            C A  +DL ++DV +  W   T  + +   KFI +H KT+A++++HS D  LL P DTRF TSFIT+ERL  V
Sbjct:  292 CVAHGMDLALEDVGKEEWVSPTLKAARDLVKFITNHHKTIALFRQHS-DLELLKPGDTRFATSFITLERLLEV 363          
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: A0A388K744_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K744_CHABU)

HSP 1 Score: 55.1 bits (131), Expect = 5.000e-7
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRHSGDRGLLLPNDTRFGTSFITVERL 210
            CAA  ++LL++D+V  P+ + T     K  KF+++ Q TLA++K       L  P  TRFGTS++ +ERL
Sbjct:   62 CAAHCLNLLLRDIVAQPFARQTMRDAHKIVKFMRNKQNTLALHKIMKKALVLKRPVKTRFGTSYVMLERL 131          
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: A0A388MBJ4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MBJ4_CHABU)

HSP 1 Score: 54.7 bits (130), Expect = 6.870e-7
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRHSGDRGLLLPNDTRFGTSFITVERL 210
            CAA  + LL++D+   P+ + T    +K  KFI + QKTLA++K       L  P  TRFGT+++ +ERL
Sbjct:  164 CAAHCLSLLLRDIAAQPFARQTMRDAQKIVKFICNKQKTLALHKIMKKALVLRRPTKTRFGTTYLMLERL 233          
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: A0A015KZ91_RHIIW (BED-type domain-containing protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015KZ91_RHIIW)

HSP 1 Score: 52.4 bits (124), Expect = 4.440e-6
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAV---YKRHSGDR--GLLLPNDTRFGTSFITVERL 210
            C A  ++LLI D++++PW  ST  + KK  K+ K HQ   AV   Y+R S D+   L LP  TR+G+S I +  L
Sbjct:  266 CVAHSLNLLIGDIMKLPWADSTIKNGKKIVKYFKSHQIPAAVLKRYQRSSYDKQISLKLPVKTRWGSSAICLNSL 340          
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: UPI000900DA12 (uncharacterized protein LOC104738381 n=2 Tax=Camelina sativa TaxID=90675 RepID=UPI000900DA12)

HSP 1 Score: 51.6 bits (122), Expect = 8.310e-6
Identity = 23/70 (32.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRHSGDRGLLLPNDTRFGTSFITVERL 210
            CAA  I+L+++DVV++P+  +      K   F+ +H+ TL   ++  G + ++ P +TRF T+FI ++ L
Sbjct:  268 CAAHCINLILEDVVKLPFVHNLVHRMSKVTIFVYNHKSTLNWVRKRPGWKEIIRPGETRFATNFIALQSL 337          
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: A0A388KP53_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KP53_CHABU)

HSP 1 Score: 51.2 bits (121), Expect = 1.150e-5
Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = 1
Query:    1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRHSGDRGLLLPNDTRFGTSFITVERL 210
            CA+  + LL++D+   PW  +      K  KF+ + Q+ LA++K       L  P +TRFGT+F+ +ERL
Sbjct:  273 CASYWLSLLVRDIAAQPWAATVMRKGHKLVKFMHNKQRALALHKTMRNALVLKRPAETRFGTTFMMLERL 342          
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: A0A2Z6S2F6_9GLOM (Uncharacterized protein n=4 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6S2F6_9GLOM)

HSP 1 Score: 50.1 bits (118), Expect = 2.910e-5
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1
Query:    1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRH---SGDR--GLLLPNDTRFGTSFITVERL 210
            C A  ++LLI D++++PW   T  + KK  K+ K HQ   A+ KR+   + DR   L LP  TR+G+S I +  L
Sbjct:  271 CVAHSLNLLIGDIMKLPWADRTMKNGKKIVKYFKSHQVPAAILKRYQLSNYDRRISLKLPVKTRWGSSAICLNSL 345          
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Match: A0A388JQR0_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JQR0_CHABU)

HSP 1 Score: 49.7 bits (117), Expect = 4.010e-5
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 1
Query:    1 CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRHSGDRGLLLPNDTRFGTSFITVERL 210
            CA   + LL++D+   P  + T     K  KF+++ QK L ++K       L L  DTRFGTS++ +ERL
Sbjct:  415 CATQCLSLLLRDIAAQPIERQTMKDAHKIVKFMRNKQKALILHKVMKKAMVLKLLADTRFGTSYMMLERL 484          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118098.1398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A1Y1IK20_KLENI5.710e-1146.58DUF659 domain-containing protein n=1 Tax=Klebsormi... [more]
A0A388K744_CHABU5.000e-740.00Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388MBJ4_CHABU6.870e-740.00Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A015KZ91_RHIIW4.440e-641.33BED-type domain-containing protein n=3 Tax=Rhizoph... [more]
UPI000900DA128.310e-632.86uncharacterized protein LOC104738381 n=2 Tax=Camel... [more]
A0A388KP53_CHABU1.150e-535.71DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A2Z6S2F6_9GLOM2.910e-538.67Uncharacterized protein n=4 Tax=Rhizophagus clarus... [more]
A0A388JQR0_CHABU4.010e-537.14DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118098contigH-elongata_contig118098:259..483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929688.8590221-CDS-H-elongata_contig118098:258..4831622929688.8590221-CDS-H-elongata_contig118098:258..483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118098 259..483 -
1691679119.5208235-CDS-H-elongata_contig118098:258..4831691679119.5208235-CDS-H-elongata_contig118098:258..483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118098 259..483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118098.1398.1prot_H-elongata_contig118098.1398.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118098 259..483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118098.1398.1

>prot_H-elongata_contig118098.1398.1 ID=prot_H-elongata_contig118098.1398.1|Name=mRNA_H-elongata_contig118098.1398.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
CAADIIDLLIKDVVQIPWTKSTFPSFKKCAKFIKHHQKTLAVYKRHSGDR
GLLLPNDTRFGTSFITVERLSSVS*
back to top

mRNA from alignment at H-elongata_contig118098:259..483-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118098.1398.1 ID=mRNA_H-elongata_contig118098.1398.1|Name=mRNA_H-elongata_contig118098.1398.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig118098:259..483- (Himanthalia elongata Himel1 dioecious)
TGCGCGGCGGACATCATCGACCTGCTCATCAAGGACGTCGTCCAGATCCC TTGGACCAAGTCCACGTTCCCTAGCTTCAAGAAGTGCGCGAAGTTCATCA AGCACCACCAGAAGACTCTGGCGGTGTACAAGAGGCACAGCGGAGACCGG GGGCTTCTTCTCCCAAACGACACTCGGTTCGGTACCTCCTTTATCACGGT CGAGCGGTTAAGCAGTGTGAGTTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig118098:259..483-

>mRNA_H-elongata_contig118098.1398.1 ID=mRNA_H-elongata_contig118098.1398.1|Name=mRNA_H-elongata_contig118098.1398.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig118098:259..483- (Himanthalia elongata Himel1 dioecious)
TGCGCGGCGGACATCATCGACCTGCTCATCAAGGACGTCGTCCAGATCCC
TTGGACCAAGTCCACGTTCCCTAGCTTCAAGAAGTGCGCGAAGTTCATCA
AGCACCACCAGAAGACTCTGGCGGTGTACAAGAGGCACAGCGGAGACCGG
GGGCTTCTTCTCCCAAACGACACTCGGTTCGGTACCTCCTTTATCACGGT
CGAGCGGTTAAGCAGTGTGAGTTAGTGCGCGGCGGACATCATCGACCTGC
TCATCAAGGACGTCGTCCAGATCCCTTGGACCAAGTCCACGTTCCCTAGC
TTCAAGAAGTGCGCGAAGTTCATCAAGCACCACCAGAAGACTCTGGCGGT
GTACAAGAGGCACAGCGGAGACCGGGGGCTTCTTCTCCCAAACGACACTC
GGTTCGGTACCTCCTTTATCACGGTCGAGCGGTTAAGCAGTGTGAGTTAG
back to top