mRNA_H-elongata_contig63896.13970.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: D7G9J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9J4_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 8.940e-15 Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 1 QAMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKATSSP--SVLISHSYIHIVVSD 198
+AM LA DTV L DGTYE+ LE+V DG NPITVVGG GAIIKA +S SV + HS+I + V++
Sbjct: 16 EAMDLAEAEDTVNLQDGTYEQALENVRDGESGNPITVVGGPGAIIKAQNSAGHSVFVGHSFIELKVAE 83
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 1.050e-13 Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1
Query: 1 QAMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKA--TSSPSVLISHSYIHI 186
+AM LA GDTV L DGTYE+ LE+V DG NPITVVGG GAIIKA ++S SV + HS+I +
Sbjct: 16 EAMDLAEAGDTVSLQDGTYEQALETVRDGESGNPITVVGGPGAIIKAQNSASRSVFVGHSFIEL 79
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: UPI000FEBAC41 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Streptomyces cavernae TaxID=2259034 RepID=UPI000FEBAC41) HSP 1 Score: 55.8 bits (133), Expect = 1.800e-7 Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query: 1 QAMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAII 135
QA+ AGPGD+++LADGTY+ R ++ T GT D P+ V GG A+I
Sbjct: 108 QALADAGPGDSIRLADGTYQGRFKATTPGTADRPVYVCGGSAAVI 152
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A6G4VEK0_9ACTN (Uncharacterized protein n=4 Tax=Streptomyces TaxID=1883 RepID=A0A6G4VEK0_9ACTN) HSP 1 Score: 55.5 bits (132), Expect = 2.460e-7 Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query: 1 QAMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAII 135
+A+ AGPGD+++LAD TYE R ++ T GT D P+ V GG GA+I
Sbjct: 108 EALADAGPGDSIRLADATYEGRFKATTPGTADQPVYVCGGPGAVI 152
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A7X5VK60_9ACTN (Uncharacterized protein n=1 Tax=Kribbella shirazensis TaxID=1105143 RepID=A0A7X5VK60_9ACTN) HSP 1 Score: 54.7 bits (130), Expect = 4.710e-7 Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1
Query: 4 AMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKA 141
A+ A PGDT+KLADGTY ++ DGT PIT+ G GA++KA
Sbjct: 353 ALATAKPGDTIKLADGTYTGNFKTTVDGTSSAPITLTGSPGAVLKA 398
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE) HSP 1 Score: 52.8 bits (125), Expect = 2.240e-6 Identity = 29/67 (43.28%), Postives = 37/67 (55.22%), Query Frame = 1
Query: 4 AMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKATSSPSVL--------ISHSYI 180
A+ +AG GD V LADGTY E + ++ G E NP+ + GG GAII S L I HSY+
Sbjct: 49 ALEVAGAGDIVSLADGTYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYV 115
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A838HDR1_9BACT (DUF1565 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A838HDR1_9BACT) HSP 1 Score: 52.0 bits (123), Expect = 4.160e-6 Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 1 QAMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVG-GEGAIIKATSSPSV 159
+A+GLAGPG T+ + GTY E +ES GT+ +PITV G G+G + ++S P+V
Sbjct: 79 RAIGLAGPGTTILVHAGTYNEHIESSKSGTKASPITVAGAGDGLVTISSSLPAV 132
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: UPI001C2BEDE8 (right-handed parallel beta-helix repeat-containing protein n=2 Tax=Streptomyces TaxID=1883 RepID=UPI001C2BEDE8) HSP 1 Score: 51.6 bits (122), Expect = 5.670e-6 Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 1
Query: 1 QAMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAII 135
+A+ AGPGD+++LADGTY R + T G +NP+ + GG GA++
Sbjct: 122 EALAQAGPGDSIRLADGTYTGRFTAKTPGLAENPVFLCGGPGAVV 166
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE) HSP 1 Score: 51.2 bits (121), Expect = 7.500e-6 Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query: 4 AMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKATSSPSVL-ISHSYI 180
A+ AG GDTV LADGTY E + +V G NP+ + GG A++ A V+ + HS++
Sbjct: 30 ALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRDALVNAGDDGKVVYVQHSWV 89
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A841DMM0_9ACTN (Aryl-phospho-beta-D-glucosidase BglC (GH1 family) n=1 Tax=Kribbella solani TaxID=236067 RepID=A0A841DMM0_9ACTN) HSP 1 Score: 51.2 bits (121), Expect = 7.900e-6 Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1
Query: 4 AMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKAT 144
A+ A PGDT+KLADGTY ++ GT PIT+ G GA++KA+
Sbjct: 351 ALANAKPGDTIKLADGTYTGNFKTTVKGTASAPITLTGSAGAVLKAS 397 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig63896.13970.1 >prot_H-elongata_contig63896.13970.1 ID=prot_H-elongata_contig63896.13970.1|Name=mRNA_H-elongata_contig63896.13970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp MGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKATSSPSback to top mRNA from alignment at H-elongata_contig63896:845..1042+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig63896.13970.1 ID=mRNA_H-elongata_contig63896.13970.1|Name=mRNA_H-elongata_contig63896.13970.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig63896:845..1042+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig63896:845..1042+ >mRNA_H-elongata_contig63896.13970.1 ID=mRNA_H-elongata_contig63896.13970.1|Name=mRNA_H-elongata_contig63896.13970.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig63896:845..1042+ (Himanthalia elongata Himel1 dioecious)back to top |