mRNA_H-elongata_contig63896.13970.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63896.13970.1
Unique NamemRNA_H-elongata_contig63896.13970.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: D7G9J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9J4_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 8.940e-15
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 QAMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKATSSP--SVLISHSYIHIVVSD 198
            +AM LA   DTV L DGTYE+ LE+V DG   NPITVVGG GAIIKA +S   SV + HS+I + V++
Sbjct:   16 EAMDLAEAEDTVNLQDGTYEQALENVRDGESGNPITVVGGPGAIIKAQNSAGHSVFVGHSFIELKVAE 83          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.050e-13
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 QAMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKA--TSSPSVLISHSYIHI 186
            +AM LA  GDTV L DGTYE+ LE+V DG   NPITVVGG GAIIKA  ++S SV + HS+I +
Sbjct:   16 EAMDLAEAGDTVSLQDGTYEQALETVRDGESGNPITVVGGPGAIIKAQNSASRSVFVGHSFIEL 79          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: UPI000FEBAC41 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Streptomyces cavernae TaxID=2259034 RepID=UPI000FEBAC41)

HSP 1 Score: 55.8 bits (133), Expect = 1.800e-7
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query:    1 QAMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAII 135
            QA+  AGPGD+++LADGTY+ R ++ T GT D P+ V GG  A+I
Sbjct:  108 QALADAGPGDSIRLADGTYQGRFKATTPGTADRPVYVCGGSAAVI 152          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A6G4VEK0_9ACTN (Uncharacterized protein n=4 Tax=Streptomyces TaxID=1883 RepID=A0A6G4VEK0_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 2.460e-7
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query:    1 QAMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAII 135
            +A+  AGPGD+++LAD TYE R ++ T GT D P+ V GG GA+I
Sbjct:  108 EALADAGPGDSIRLADATYEGRFKATTPGTADQPVYVCGGPGAVI 152          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A7X5VK60_9ACTN (Uncharacterized protein n=1 Tax=Kribbella shirazensis TaxID=1105143 RepID=A0A7X5VK60_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 4.710e-7
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1
Query:    4 AMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKA 141
            A+  A PGDT+KLADGTY    ++  DGT   PIT+ G  GA++KA
Sbjct:  353 ALATAKPGDTIKLADGTYTGNFKTTVDGTSSAPITLTGSPGAVLKA 398          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 2.240e-6
Identity = 29/67 (43.28%), Postives = 37/67 (55.22%), Query Frame = 1
Query:    4 AMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKATSSPSVL--------ISHSYI 180
            A+ +AG GD V LADGTY E + ++  G E NP+ + GG GAII   S    L        I HSY+
Sbjct:   49 ALEVAGAGDIVSLADGTYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYV 115          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A838HDR1_9BACT (DUF1565 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A838HDR1_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 4.160e-6
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 QAMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVG-GEGAIIKATSSPSV 159
            +A+GLAGPG T+ +  GTY E +ES   GT+ +PITV G G+G +  ++S P+V
Sbjct:   79 RAIGLAGPGTTILVHAGTYNEHIESSKSGTKASPITVAGAGDGLVTISSSLPAV 132          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: UPI001C2BEDE8 (right-handed parallel beta-helix repeat-containing protein n=2 Tax=Streptomyces TaxID=1883 RepID=UPI001C2BEDE8)

HSP 1 Score: 51.6 bits (122), Expect = 5.670e-6
Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 1
Query:    1 QAMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAII 135
            +A+  AGPGD+++LADGTY  R  + T G  +NP+ + GG GA++
Sbjct:  122 EALAQAGPGDSIRLADGTYTGRFTAKTPGLAENPVFLCGGPGAVV 166          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 7.500e-6
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query:    4 AMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKATSSPSVL-ISHSYI 180
            A+  AG GDTV LADGTY E + +V  G   NP+ + GG  A++ A     V+ + HS++
Sbjct:   30 ALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRDALVNAGDDGKVVYVQHSWV 89          
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Match: A0A841DMM0_9ACTN (Aryl-phospho-beta-D-glucosidase BglC (GH1 family) n=1 Tax=Kribbella solani TaxID=236067 RepID=A0A841DMM0_9ACTN)

HSP 1 Score: 51.2 bits (121), Expect = 7.900e-6
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1
Query:    4 AMGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKAT 144
            A+  A PGDT+KLADGTY    ++   GT   PIT+ G  GA++KA+
Sbjct:  351 ALANAKPGDTIKLADGTYTGNFKTTVKGTASAPITLTGSAGAVLKAS 397          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63896.13970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G9J4_ECTSI8.940e-1557.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZD2_ECTSI1.050e-1360.94FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
UPI000FEBAC411.800e-753.33right-handed parallel beta-helix repeat-containing... [more]
A0A6G4VEK0_9ACTN2.460e-753.33Uncharacterized protein n=4 Tax=Streptomyces TaxID... [more]
A0A7X5VK60_9ACTN4.710e-752.17Uncharacterized protein n=1 Tax=Kribbella shirazen... [more]
A0A6H5K1D2_9PHAE2.240e-643.28Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
A0A838HDR1_9BACT4.160e-648.15DUF1565 domain-containing protein n=1 Tax=Gemmatim... [more]
UPI001C2BEDE85.670e-646.67right-handed parallel beta-helix repeat-containing... [more]
A0A6H5KT05_9PHAE7.500e-641.67Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
A0A841DMM0_9ACTN7.900e-648.94Aryl-phospho-beta-D-glucosidase BglC (GH1 family) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63896contigH-elongata_contig63896:845..1042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPectin lyase fold
Ec32 orthologEc-00_011490.1
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size192
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.2889643-UTR-H-elongata_contig63896:844..8501622931023.2889643-UTR-H-elongata_contig63896:844..850Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63896 845..850 +
1691679666.1538706-UTR-H-elongata_contig63896:844..8501691679666.1538706-UTR-H-elongata_contig63896:844..850Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63896 845..850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.3062112-CDS-H-elongata_contig63896:850..10421622931023.3062112-CDS-H-elongata_contig63896:850..1042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63896 851..1042 +
1691679666.1730452-CDS-H-elongata_contig63896:850..10421691679666.1730452-CDS-H-elongata_contig63896:850..1042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63896 851..1042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63896.13970.1prot_H-elongata_contig63896.13970.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63896 851..1042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63896.13970.1

>prot_H-elongata_contig63896.13970.1 ID=prot_H-elongata_contig63896.13970.1|Name=mRNA_H-elongata_contig63896.13970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MGLAGPGDTVKLADGTYEERLESVTDGTEDNPITVVGGEGAIIKATSSPS
VLISHSYIHIVVSD
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mRNA from alignment at H-elongata_contig63896:845..1042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63896.13970.1 ID=mRNA_H-elongata_contig63896.13970.1|Name=mRNA_H-elongata_contig63896.13970.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig63896:845..1042+ (Himanthalia elongata Himel1 dioecious)
CAGGCGATGGGGCTCGCTGGACCTGGTGACACTGTGAAGCTCGCAGACGG CACGTACGAGGAACGCCTAGAGAGCGTAACTGACGGGACGGAAGATAATC CGATCACAGTTGTCGGAGGCGAGGGCGCTATTATTAAGGCGACCTCTTCT CCTTCTGTTCTCATTTCTCACTCTTACATCCATATTGTGGTGAGTGAT
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Coding sequence (CDS) from alignment at H-elongata_contig63896:845..1042+

>mRNA_H-elongata_contig63896.13970.1 ID=mRNA_H-elongata_contig63896.13970.1|Name=mRNA_H-elongata_contig63896.13970.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig63896:845..1042+ (Himanthalia elongata Himel1 dioecious)
ATGGGGCTCGCTGGACCTGGTGACACTGTGAAGCTCGCAGACGGCACGTA
CGAGGAACGCCTAGAGAGCGTAACTGACGGGACGGAAGATAATCCGATCA
CAGTTGTCGGAGGCGAGGGCGCTATTATTAAGGCGACCTCTTCTCCTTCT
GTTCTCATTTCTCACTCTTACATCCATATTGTGGTGAGTGATATGGGGCT
CGCTGGACCTGGTGACACTGTGAAGCTCGCAGACGGCACGTACGAGGAAC
GCCTAGAGAGCGTAACTGACGGGACGGAAGATAATCCGATCACAGTTGTC
GGAGGCGAGGGCGCTATTATTAAGGCGACCTCTTCTCCTTCTGTTCTCAT
TTCTCACTCTTACATCCATATTGTGGTGAGTGAT
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