mRNA_H-elongata_contig63774.13949.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63774.13949.1
Unique NamemRNA_H-elongata_contig63774.13949.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 2.770e-101
Identity = 152/232 (65.52%), Postives = 183/232 (78.88%), Query Frame = 1
Query:    1 MQGFTVEGKIGDGSDAD--AYINKCVYVEGEDSD----LDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDEAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDGNCELIG 678
            ++GFTVEGKIG  SD D  +++NKCVYVEG  S     LDGFVME +++QNCGGECVRLK++V+NA+++ NTI NCG+HDY F S DKNGEG+YIGTSS QW +   DTC  NLV GN IST+GNECVDIKEG++ NV+E+NIC+ QLD  S CYD RGD NT RYNV T CMGAGVRLGGW+VDG+ +G GN VYGNDF   GEG++KV    QGD+C NTCEDG+C L+G
Sbjct:  117 LKGFTVEGKIGT-SDTDEASWVNKCVYVEGPGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVINAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQWTN-GEDTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWEVDGHQYGVGNSVYGNDFNAVGEGALKVLVGEQGDICGNTCEDGSCSLVG 346          
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 9.250e-99
Identity = 143/231 (61.90%), Postives = 181/231 (78.35%), Query Frame = 1
Query:    1 MQGFTVEGKIGDG-SDADAYINKCVYVEGEDSD----LDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDEAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDGNCELIG 678
            ++GF+VEGKIG   +D  +++NKCVYVEG  ++    LDGFVME +++QNCGGECVRLK++VVNA++  NTI NCG+HDY F S+DKNGEG+YIGTSS QW +   DTC GN+V  N+IST+GNECVDIKEGS+ NV+E+N C++QLD  S CYD RGD NT RYNV ++C GAGVRLGGW+VDG+ +G  N VYGNDF   G G++KV    QGD+C NTCE+G+C L G
Sbjct:  117 LKGFSVEGKIGSNDTDQASWVNKCVYVEGPGANSSAVLDGFVMEDMVVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQWTN-GEDTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRYNVGSECTGAGVRLGGWEVDGHQYGVNNSVYGNDFYAVGVGALKVLVGEQGDICGNTCEEGSCSLTG 346          
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 3.590e-91
Identity = 134/230 (58.26%), Postives = 170/230 (73.91%), Query Frame = 1
Query:    1 MQGFTVEGKIGDGSDADAYINKCVYVEGEDSD----LDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDEAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDGNCELIG 678
            ++GFTVEG+IG     D+Y+  C+YV+G  SD    LDGFVME + +QNCGGECVRLK+ V NA+I  NTI NCGIHDY FES D NG+G+ IGTSS++W D   D C  NLV GN+I T+ NECVD+KEG+  NV+E+N+C NQLD NS CY+ RG+DN  R N  + C+GAGVRLGGW+VDG+ +G GN VY NDF D G G++K+  +GQG +C NTC   +C+LIG
Sbjct:   79 LKGFTVEGQIGTEVTEDSYVLNCIYVQGPGSDSSTFLDGFVMEEMAVQNCGGECVRLKDGVTNAKIFSNTITNCGIHDYMFESGDMNGQGVCIGTSSDEWPDGEEDVCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFRNNAGSDCLGAGVRLGGWEVDGFQYGVGNSVYDNDFNDVGFGALKIMVDGQGTICGNTCAGDDCQLIG 308          
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 3.960e-79
Identity = 117/224 (52.23%), Postives = 157/224 (70.09%), Query Frame = 1
Query:    1 MQGFTVEGKIGDGSDADAYINKCVYVEGE----DSDLDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDEAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDG 660
            ++GF+V+GKI D  +A++Y++KCV+VEG     D  L+GFVM+ + +QNCG ECVRLK+ +V A I +N I++CG+ D+ + +  KNGEGIY+GTSS QW D  PD C  N + GN I+ NGNECVDIKEGST  +VEEN C+ QLDE+S C+  RGD N  RYN A+ C+G GVR+GGW+VDG+ +GQ N +Y N F     G +      QG VC N+C+ G
Sbjct:   91 LEGFSVDGKISDDDEAESYVDKCVFVEGTSTSGDERLEGFVMQDVYVQNCGDECVRLKSFIVGAVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQWSD-GPDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYNTASDCLGVGVRIGGWEVDGHKYGQDNSIYENSFTRAESGGLSFFALPQGKVCGNSCQGG 313          
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 3.060e-75
Identity = 123/242 (50.83%), Postives = 162/242 (66.94%), Query Frame = 1
Query:    1 MQGFTVEGKIGDGSDADAYINKCVYVEGE-------------DSDLDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVD-------EAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDGNC 666
            ++GFT++G++ D    ++Y++KC++VEG+             +S L G V++GL IQNCG EC+R++N V NA I  N IENCGI+D+ F+ D K GE IYIGTSSNQW D         PD    NLV GN +   GNECVDIKEG+T NVVE N C +Q D  S CYD RG++NT RYN A +C+GAG+RLGG  +DG+ +G  NHVYGN+F++   GSIK   E QG +CDN+C +G C
Sbjct:  117 LEGFTIDGQLDDEDVEESYVDKCIFVEGQAAPTMLTHQGQEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAVQCLGAGIRLGGHTIDGFVYGVDNHVYGNEFLETEAGSIKSRVEPQGVICDNSCANGEC 358          
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 3.360e-75
Identity = 123/244 (50.41%), Postives = 165/244 (67.62%), Query Frame = 1
Query:    1 MQGFTVEGKIGDGSDADAYINKCVYVEG----EDSDLDG---------FVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDEA-------PDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDGNCEL 672
            ++GFT++G+I D    D++++KC++VEG    ED + DG          V++ + IQNCG EC+R++N V N  I++N IE+CGI+DY +  D K GE IYIGTSSNQW D A       PD C  NLV GN +   GNECVDIKEG+T NVVE N C +Q D  S CYD RG++NT RYN A  C+G G+RLGG ++DG  +G  NHVYGN F + G+GSIK   + QG +C+N+CEDG+C++
Sbjct:  163 LRGFTIDGQIDDADHEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNTVIIDNDIEDCGIYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRYNTAENCLGGGIRLGGHEIDGITYGVDNHVYGNSFRETGDGSIKARRDPQGVICENSCEDGDCDV 406          
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: D8LJ29_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ29_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 9.130e-70
Identity = 113/200 (56.50%), Postives = 138/200 (69.00%), Query Frame = 1
Query:   88 DSDLDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVD-------EAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDGNC 666
            +S L G V++GL IQNCG EC+R++N V NA I  N IENCGI+D+ F+ D K GE IYIGTSSNQW D         PD    NLV GN +   GNECVDIKEG+T NVVE N C +Q D  S CYD RG++NT RYN A +C+GAG+RLGG  +DG+ +G  NHVYGN+F++   GSIK   E QG +CDN+C DG C
Sbjct:   10 ESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNELVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAIQCLGAGIRLGGHTIDGFVYGVDNHVYGNEFLETEAGSIKSRVEPQGVICDNSCADGEC 209          
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.980e-62
Identity = 107/165 (64.85%), Postives = 129/165 (78.18%), Query Frame = 1
Query:    1 MQGFTVEGKIGDGSDAD--AYINKCVYVEGEDSD----LDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDEAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIR 477
            ++GFTVEGK+G  SD D  +++NKCVYVEG  S     LDGFVME +++QNCGGECVRLK++VVNA++  NTI NCG+HD+ F S DKNGEG+YIGTSS QW +   DTC  NLV GN IST+GNECVDIKEG++ NVVE NIC++QLD  S CYD RGD NT R
Sbjct:  117 LKGFTVEGKVGT-SDTDEASWVNKCVYVEGPGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDFMFNSGDKNGEGVYIGTSSTQWTN-GEDTCNDNLVFGNRISTSGNECVDIKEGASGNVVENNICSDQLDAESGCYDSRGDGNTFR 279          
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: Q6XM06_9PHYC (FirrV-1-B30 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM06_9PHYC)

HSP 1 Score: 208 bits (529), Expect = 9.230e-60
Identity = 109/244 (44.67%), Postives = 146/244 (59.84%), Query Frame = 1
Query:    1 MQGFTVEGKIGDGSDADAYINKCVYVEG-------------EDSDLDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVD-----EAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDGNCELIG 678
            ++GFTV GK   G+D   Y++KC++V G              +S + G ++E + +++CGGEC+RL++ V +AE+  N IE CG HDY F+   KNGE IY+GTSSNQW D       PD      +  N+I T  NECVD+KEGSTD +VE N C+NQLD NSA +D R DD T RYN  + C GAG+R+GG  +DG  +G+ N  YGN   +    +IKVET  Q   C N C    C + G
Sbjct:  114 LRGFTVSGKRNSGNDPSDYVDKCIFVMGISSPEIERTSGIEYESSITGVIIEDMEVEDCGGECIRLRSFVTHAEVTGNRIERCGRHDYLFDGAGKNGEAIYVGTSSNQWNDGKNSKSGPDKTKYIWIHDNVIDTQANECVDVKEGSTDVLVEYNACSNQLDTNSAGFDSRTDDVTFRYNEVSNCAGAGIRIGGHKIDGKTYGENNEAYGNVMRNNAYSAIKVETGKQHVFCQNDCGKEGCTVKG 357          
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55)

HSP 1 Score: 193 bits (491), Expect = 7.740e-57
Identity = 105/226 (46.46%), Postives = 139/226 (61.50%), Query Frame = 1
Query:    1 MQGFTVEGKIGDGSDADAYINKCVYVEGEDSDLD--GFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDE-----APDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCED 657
            ++ FT++G++G G+  + + +  VYV+G +      GFVM  + ++N GGECVRL+  V  AEI +NT  NCG++D++F +  KNGE IY+GTSSNQW D       PD    N +  N   TNGNECVDIKEG+  N+VE NIC+ Q D NSA +D RGD N  RYNV+    GAGVRLGG  VDG  +G  N VYGN   +  +  +K+    Q  VC N   D
Sbjct:  122 LRNFTIDGQVGSGNTMEDFRDILVYVKGNEPQQGPTGFVMRAMSLKNAGGECVRLRYYVTEAEIFDNTFYNCGVYDFKFNNGGKNGEAIYVGTSSNQWDDGKNPTGGPDPSNHNWIHHNKFLTNGNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYNVSHDNKGAGVRLGGNTVDGRQYGVNNQVYGNLLYNNAQAGVKLMAAPQEKVCGNPTSD 347          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXR8_ECTSI2.770e-10165.52FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FXR9_ECTSI9.250e-9961.90FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FZD2_ECTSI3.590e-9158.26FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KT05_9PHAE3.960e-7952.23Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
A0A6H5K1D2_9PHAE3.060e-7550.83Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
D8LJ42_ECTSI3.360e-7550.41FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LJ29_ECTSI9.130e-7056.50FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5LEX7_9PHAE1.980e-6264.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q6XM06_9PHYC9.230e-6044.67FirrV-1-B30 n=1 Tax=Feldmannia irregularis virus a... [more]
UPI00036AEC557.740e-5746.46right-handed parallel beta-helix repeat-containing... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63774contigH-elongata_contig63774:724..2986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score195.7
Seed ortholog evalue2.4e-47
Seed eggNOG ortholog1121935.AQXX01000136_gene4114
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1NHJ7@1224,1SHNB@1236,COG3420@1,COG3420@2
COG Functional cat.P
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size681
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63774.13949.1prot_H-elongata_contig63774.13949.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63774 724..2986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931020.7100465-CDS-H-elongata_contig63774:723..8631622931020.7100465-CDS-H-elongata_contig63774:723..863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63774 724..863 +
1691679665.251316-CDS-H-elongata_contig63774:723..8631691679665.251316-CDS-H-elongata_contig63774:723..863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63774 724..863 +
1622931020.728187-CDS-H-elongata_contig63774:1125..12701622931020.728187-CDS-H-elongata_contig63774:1125..1270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63774 1126..1270 +
1691679665.2665398-CDS-H-elongata_contig63774:1125..12701691679665.2665398-CDS-H-elongata_contig63774:1125..1270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63774 1126..1270 +
1622931020.7559767-CDS-H-elongata_contig63774:1761..19521622931020.7559767-CDS-H-elongata_contig63774:1761..1952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63774 1762..1952 +
1691679665.2761564-CDS-H-elongata_contig63774:1761..19521691679665.2761564-CDS-H-elongata_contig63774:1761..1952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63774 1762..1952 +
1622931020.7740796-CDS-H-elongata_contig63774:2282..23701622931020.7740796-CDS-H-elongata_contig63774:2282..2370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63774 2283..2370 +
1691679665.2846076-CDS-H-elongata_contig63774:2282..23701691679665.2846076-CDS-H-elongata_contig63774:2282..2370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63774 2283..2370 +
1622931020.78858-CDS-H-elongata_contig63774:2869..29861622931020.78858-CDS-H-elongata_contig63774:2869..2986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63774 2870..2986 +
1691679665.2933352-CDS-H-elongata_contig63774:2869..29861691679665.2933352-CDS-H-elongata_contig63774:2869..2986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63774 2870..2986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63774.13949.1

>prot_H-elongata_contig63774.13949.1 ID=prot_H-elongata_contig63774.13949.1|Name=mRNA_H-elongata_contig63774.13949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
MQGFTVEGKIGDGSDADAYINKCVYVEGEDSDLDGFVMEGLLIQNCGGEC
VRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDEA
PDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYD
VRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEG
SIKVETEGQGDVCDNTCEDGNCELIG*
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mRNA from alignment at H-elongata_contig63774:724..2986+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63774.13949.1 ID=mRNA_H-elongata_contig63774.13949.1|Name=mRNA_H-elongata_contig63774.13949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2263bp|location=Sequence derived from alignment at H-elongata_contig63774:724..2986+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGGCTTTACCGTGGAGGGGAAAATTGGCGATGGTTCTGATGCCGA TGCGTACATTAACAAGTGCGTGTATGTTGAAGGCGAAGACTCCGACCTCG ATGGGTTCGTCATGGAAGGTCTACTTATTCAAAACTGCGGGTGAGATATA CCAGTTTACCGATAAGGAGAAAAATTTAAGAATAAAGGAGTCCCTAAAAC GGTCGATCTATTTTTTTAAGCGTCTTAAACCTTTGTGGTGTGACTGACAG AGAATGACCGTCCGCGTTTTTTGTGTCTCGAAGCCACTTTCTCACATCGT CCAATATGTCAGATACCATCTTTTAGATAATATGCTTTACGTGCAATTGA TATTTTTCACGGTTTTTCGAACTACATCATCGCTGGACGAATAACGGATA AGTGGCGAATGCGTGCGGCTCAAGAACAATGTTGTTAACGCGGAGATCCT CGAGAATACCATCGAGAACTGTGGCATCCACGACTACGAGTTTGAGTCTG ACGATAAAAACGGCGAAGGCATCTATATCGGTACTTCGAGCAACCAGGTG TGCCTATCTACAACCCTTTTGAAATGATGTGCGTTGCTTGGTATAAGCCA AAGTTCCATTCGACTTGCCTACTTTTGTCGTATCAAAGGGTTAAACATAT AGCGGTTAAGTTCTAGCGAGCGCGGTTTCATCATAGTACCAGAAATATTG CGCAAGAGTTTGATGAGGCCTCACGATACGTTTCGGAAATTGACGAGTGG TCTATTCCGAGGTCCAGCGATTGACGTCTTGTCACCCTTAACACGAATGT TTTTTTCGACGGTCTGATCTCTTGCTACAACTGCTTGGCGGATTCATCAT ATCATACTTGGAGCCCTGAGCTAATATCGATACTTCACGTGACACGTTTT CCATTTCGAGCTACTTTTTTATACGATACTTCGTGCAGACACGCGATGAT CATGCTCAACTCCCACATAACTACCCGCTTTACTGTGTGCTGAATCGATT TCTACTGTCATGCACCGTCACTTAAATTGTACCTTCAGTGGGTCGATGAA GCACCCGACACCTGCATCGGCAACCTGGTGAAGGGAAACATTATCAGCAC CAACGGTAACGAATGTGTGGACATCAAGGAAGGCTCGACAGATAATGTCG TCGAGGAGAACATCTGCACTAACCAACTCGACGAGAACTCCGCCTGCTAC GATGTCCGCGGAGACGACAACACGATAAGGTGCGATGACGTTCGGAACAC GCGCCTGAATGCTGCTGTAGTACTATTTTTACCAATGCTTCCTCGTGGCT GTGACTTCGTTTGCCTTTCGATTGAGTTTTATGTTAATCCAGCTGGCATA TTAGGGTCAGTTGCGTATGTATCCTATCTTGGCGACTTACCCATGTGTAG GAACAAAAACTAAAATCAGTGATAATTACATTTTGTTCCACTCATATCCC CACTTCCACTTACAAAGAAATCTTCGACTTCTCGCTAGGGTTTAGCCCCC TGCTCCACAAAACATGCTACGAAAGCGTTGTAAACCTTCCCATGCATTTG CCATCACAGATACAATGTCGCGACCAAATGCATGGGCGCTGGTGTGCGTC TAGGAGGATGGGATGTGGACGGCTATGCGCACGGACAGGGGAACCACGTC AGTACAACGGCTTGCTGGGTTGTGCATAGTGATGCATGCTTTCTTTGAGG GTGGCAGTGGGAATGTGATCACGAGTTTTGATCGACGACTATTTCCTTGT ACTTTTCCAGAGAGAGAAATGTTTCATAGAAATGAAAGTAAGGTGAACGA TGAATAGTTTACGATGGCAAAAATATATAGTCGAGCCTAAGCACTACTGA AATGATTTTGTTTTTTGAATTCACACATAAGCTGATCTCAAAATCCAGCT CGTGGTCACAAGGTAGAGAAAACACCATCCAGAAGGAGAGAAACGTTCAA GGTACTCTCCAATACAAAAGGAAAACTATGTCGAGCACTGATTCAAACGT CCGCCTTGAGACTAATACATTTTCTAATAGTCGGTGCAAAATTGGGAAAC ACTTATTTGTATGGTTATGTTTCTCTATGAAATATTGGAAACGTAACGAG CGTTCACGTGAATCCTCTGCCGGCTGCTGCTGCCTTCGCTTTGTAGGTCT ATGGCAATGACTTTGTTGACTGTGGAGAAGGGTCGATCAAGGTTGAAACC GAAGGCCAGGGTGACGTCTGCGACAACACTTGCGAAGACGGAAACTGCGA GCTAATAGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig63774:724..2986+

>mRNA_H-elongata_contig63774.13949.1 ID=mRNA_H-elongata_contig63774.13949.1|Name=mRNA_H-elongata_contig63774.13949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig63774:724..2986+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGGCTTTACCGTGGAGGGGAAAATTGGCGATGGTTCTGATGCCGA
TGCGTACATTAACAAGTGCGTGTATGTTGAAGGCGAAGACTCCGACCTCG
ATGGGTTCGTCATGGAAGGTCTACTTATTCAAAACTGCGGATGCAGGGCT
TTACCGTGGAGGGGAAAATTGGCGATGGTTCTGATGCCGATGCGTACATT
AACAAGTGCGTGTATGTTGAAGGCGAAGACTCCGACCTCGATGGGTTCGT
CATGGAAGGTCTACTTATTCAAAACTGCGGTGGCGAATGCGTGCGGCTCA
AGAACAATGTTGTTAACGCGGAGATCCTCGAGAATACCATCGAGAACTGT
GGCATCCACGACTACGAGTTTGAGTCTGACGATAAAAACGGCGAAGGCAT
CTATATCGGTACTTCGAGCAACCAGTGGCGAATGCGTGCGGCTCAAGAAC
AATGTTGTTAACGCGGAGATCCTCGAGAATACCATCGAGAACTGTGGCAT
CCACGACTACGAGTTTGAGTCTGACGATAAAAACGGCGAAGGCATCTATA
TCGGTACTTCGAGCAACCAGTGGGTCGATGAAGCACCCGACACCTGCATC
GGCAACCTGGTGAAGGGAAACATTATCAGCACCAACGGTAACGAATGTGT
GGACATCAAGGAAGGCTCGACAGATAATGTCGTCGAGGAGAACATCTGCA
CTAACCAACTCGACGAGAACTCCGCCTGCTACGATGTCCGCGGAGACGAC
AACACGATAAGTGGGTCGATGAAGCACCCGACACCTGCATCGGCAACCTG
GTGAAGGGAAACATTATCAGCACCAACGGTAACGAATGTGTGGACATCAA
GGAAGGCTCGACAGATAATGTCGTCGAGGAGAACATCTGCACTAACCAAC
TCGACGAGAACTCCGCCTGCTACGATGTCCGCGGAGACGACAACACGATA
AGATACAATGTCGCGACCAAATGCATGGGCGCTGGTGTGCGTCTAGGAGG
ATGGGATGTGGACGGCTATGCGCACGGACAGGGGAACCACATACAATGTC
GCGACCAAATGCATGGGCGCTGGTGTGCGTCTAGGAGGATGGGATGTGGA
CGGCTATGCGCACGGACAGGGGAACCACGTCTATGGCAATGACTTTGTTG
ACTGTGGAGAAGGGTCGATCAAGGTTGAAACCGAAGGCCAGGGTGACGTC
TGCGACAACACTTGCGAAGACGGAAACTGCGAGCTAATAGGGTGAGTCTA
TGGCAATGACTTTGTTGACTGTGGAGAAGGGTCGATCAAGGTTGAAACCG
AAGGCCAGGGTGACGTCTGCGACAACACTTGCGAAGACGGAAACTGCGAG
CTAATAGGGTGA
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