mRNA_H-elongata_contig63774.13949.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI) HSP 1 Score: 312 bits (800), Expect = 2.770e-101 Identity = 152/232 (65.52%), Postives = 183/232 (78.88%), Query Frame = 1
Query: 1 MQGFTVEGKIGDGSDAD--AYINKCVYVEGEDSD----LDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDEAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDGNCELIG 678
++GFTVEGKIG SD D +++NKCVYVEG S LDGFVME +++QNCGGECVRLK++V+NA+++ NTI NCG+HDY F S DKNGEG+YIGTSS QW + DTC NLV GN IST+GNECVDIKEG++ NV+E+NIC+ QLD S CYD RGD NT RYNV T CMGAGVRLGGW+VDG+ +G GN VYGNDF GEG++KV QGD+C NTCEDG+C L+G
Sbjct: 117 LKGFTVEGKIGT-SDTDEASWVNKCVYVEGPGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVINAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQWTN-GEDTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWEVDGHQYGVGNSVYGNDFNAVGEGALKVLVGEQGDICGNTCEDGSCSLVG 346
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI) HSP 1 Score: 300 bits (769), Expect = 9.250e-99 Identity = 143/231 (61.90%), Postives = 181/231 (78.35%), Query Frame = 1
Query: 1 MQGFTVEGKIGDG-SDADAYINKCVYVEGEDSD----LDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDEAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDGNCELIG 678
++GF+VEGKIG +D +++NKCVYVEG ++ LDGFVME +++QNCGGECVRLK++VVNA++ NTI NCG+HDY F S+DKNGEG+YIGTSS QW + DTC GN+V N+IST+GNECVDIKEGS+ NV+E+N C++QLD S CYD RGD NT RYNV ++C GAGVRLGGW+VDG+ +G N VYGNDF G G++KV QGD+C NTCE+G+C L G
Sbjct: 117 LKGFSVEGKIGSNDTDQASWVNKCVYVEGPGANSSAVLDGFVMEDMVVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQWTN-GEDTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRYNVGSECTGAGVRLGGWEVDGHQYGVNNSVYGNDFYAVGVGALKVLVGEQGDICGNTCEEGSCSLTG 346
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI) HSP 1 Score: 286 bits (732), Expect = 3.590e-91 Identity = 134/230 (58.26%), Postives = 170/230 (73.91%), Query Frame = 1
Query: 1 MQGFTVEGKIGDGSDADAYINKCVYVEGEDSD----LDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDEAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDGNCELIG 678
++GFTVEG+IG D+Y+ C+YV+G SD LDGFVME + +QNCGGECVRLK+ V NA+I NTI NCGIHDY FES D NG+G+ IGTSS++W D D C NLV GN+I T+ NECVD+KEG+ NV+E+N+C NQLD NS CY+ RG+DN R N + C+GAGVRLGGW+VDG+ +G GN VY NDF D G G++K+ +GQG +C NTC +C+LIG
Sbjct: 79 LKGFTVEGQIGTEVTEDSYVLNCIYVQGPGSDSSTFLDGFVMEEMAVQNCGGECVRLKDGVTNAKIFSNTITNCGIHDYMFESGDMNGQGVCIGTSSDEWPDGEEDVCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFRNNAGSDCLGAGVRLGGWEVDGFQYGVGNSVYDNDFNDVGFGALKIMVDGQGTICGNTCAGDDCQLIG 308
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE) HSP 1 Score: 249 bits (635), Expect = 3.960e-79 Identity = 117/224 (52.23%), Postives = 157/224 (70.09%), Query Frame = 1
Query: 1 MQGFTVEGKIGDGSDADAYINKCVYVEGE----DSDLDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDEAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDG 660
++GF+V+GKI D +A++Y++KCV+VEG D L+GFVM+ + +QNCG ECVRLK+ +V A I +N I++CG+ D+ + + KNGEGIY+GTSS QW D PD C N + GN I+ NGNECVDIKEGST +VEEN C+ QLDE+S C+ RGD N RYN A+ C+G GVR+GGW+VDG+ +GQ N +Y N F G + QG VC N+C+ G
Sbjct: 91 LEGFSVDGKISDDDEAESYVDKCVFVEGTSTSGDERLEGFVMQDVYVQNCGDECVRLKSFIVGAVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQWSD-GPDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYNTASDCLGVGVRIGGWEVDGHKYGQDNSIYENSFTRAESGGLSFFALPQGKVCGNSCQGG 313
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE) HSP 1 Score: 245 bits (625), Expect = 3.060e-75 Identity = 123/242 (50.83%), Postives = 162/242 (66.94%), Query Frame = 1
Query: 1 MQGFTVEGKIGDGSDADAYINKCVYVEGE-------------DSDLDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVD-------EAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDGNC 666
++GFT++G++ D ++Y++KC++VEG+ +S L G V++GL IQNCG EC+R++N V NA I N IENCGI+D+ F+ D K GE IYIGTSSNQW D PD NLV GN + GNECVDIKEG+T NVVE N C +Q D S CYD RG++NT RYN A +C+GAG+RLGG +DG+ +G NHVYGN+F++ GSIK E QG +CDN+C +G C
Sbjct: 117 LEGFTIDGQLDDEDVEESYVDKCIFVEGQAAPTMLTHQGQEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAVQCLGAGIRLGGHTIDGFVYGVDNHVYGNEFLETEAGSIKSRVEPQGVICDNSCANGEC 358
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI) HSP 1 Score: 249 bits (636), Expect = 3.360e-75 Identity = 123/244 (50.41%), Postives = 165/244 (67.62%), Query Frame = 1
Query: 1 MQGFTVEGKIGDGSDADAYINKCVYVEG----EDSDLDG---------FVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDEA-------PDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDGNCEL 672
++GFT++G+I D D++++KC++VEG ED + DG V++ + IQNCG EC+R++N V N I++N IE+CGI+DY + D K GE IYIGTSSNQW D A PD C NLV GN + GNECVDIKEG+T NVVE N C +Q D S CYD RG++NT RYN A C+G G+RLGG ++DG +G NHVYGN F + G+GSIK + QG +C+N+CEDG+C++
Sbjct: 163 LRGFTIDGQIDDADHEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNTVIIDNDIEDCGIYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRYNTAENCLGGGIRLGGHEIDGITYGVDNHVYGNSFRETGDGSIKARRDPQGVICENSCEDGDCDV 406
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: D8LJ29_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ29_ECTSI) HSP 1 Score: 224 bits (572), Expect = 9.130e-70 Identity = 113/200 (56.50%), Postives = 138/200 (69.00%), Query Frame = 1
Query: 88 DSDLDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVD-------EAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDGNC 666
+S L G V++GL IQNCG EC+R++N V NA I N IENCGI+D+ F+ D K GE IYIGTSSNQW D PD NLV GN + GNECVDIKEG+T NVVE N C +Q D S CYD RG++NT RYN A +C+GAG+RLGG +DG+ +G NHVYGN+F++ GSIK E QG +CDN+C DG C
Sbjct: 10 ESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNELVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAIQCLGAGIRLGGHTIDGFVYGVDNHVYGNEFLETEAGSIKSRVEPQGVICDNSCADGEC 209
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE) HSP 1 Score: 210 bits (534), Expect = 1.980e-62 Identity = 107/165 (64.85%), Postives = 129/165 (78.18%), Query Frame = 1
Query: 1 MQGFTVEGKIGDGSDAD--AYINKCVYVEGEDSD----LDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDEAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIR 477
++GFTVEGK+G SD D +++NKCVYVEG S LDGFVME +++QNCGGECVRLK++VVNA++ NTI NCG+HD+ F S DKNGEG+YIGTSS QW + DTC NLV GN IST+GNECVDIKEG++ NVVE NIC++QLD S CYD RGD NT R
Sbjct: 117 LKGFTVEGKVGT-SDTDEASWVNKCVYVEGPGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDFMFNSGDKNGEGVYIGTSSTQWTN-GEDTCNDNLVFGNRISTSGNECVDIKEGASGNVVENNICSDQLDAESGCYDSRGDGNTFR 279
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: Q6XM06_9PHYC (FirrV-1-B30 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM06_9PHYC) HSP 1 Score: 208 bits (529), Expect = 9.230e-60 Identity = 109/244 (44.67%), Postives = 146/244 (59.84%), Query Frame = 1
Query: 1 MQGFTVEGKIGDGSDADAYINKCVYVEG-------------EDSDLDGFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVD-----EAPDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCEDGNCELIG 678
++GFTV GK G+D Y++KC++V G +S + G ++E + +++CGGEC+RL++ V +AE+ N IE CG HDY F+ KNGE IY+GTSSNQW D PD + N+I T NECVD+KEGSTD +VE N C+NQLD NSA +D R DD T RYN + C GAG+R+GG +DG +G+ N YGN + +IKVET Q C N C C + G
Sbjct: 114 LRGFTVSGKRNSGNDPSDYVDKCIFVMGISSPEIERTSGIEYESSITGVIIEDMEVEDCGGECIRLRSFVTHAEVTGNRIERCGRHDYLFDGAGKNGEAIYVGTSSNQWNDGKNSKSGPDKTKYIWIHDNVIDTQANECVDVKEGSTDVLVEYNACSNQLDTNSAGFDSRTDDVTFRYNEVSNCAGAGIRIGGHKIDGKTYGENNEAYGNVMRNNAYSAIKVETGKQHVFCQNDCGKEGCTVKG 357
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55) HSP 1 Score: 193 bits (491), Expect = 7.740e-57 Identity = 105/226 (46.46%), Postives = 139/226 (61.50%), Query Frame = 1
Query: 1 MQGFTVEGKIGDGSDADAYINKCVYVEGEDSDLD--GFVMEGLLIQNCGGECVRLKNNVVNAEILENTIENCGIHDYEFESDDKNGEGIYIGTSSNQWVDE-----APDTCIGNLVKGNIISTNGNECVDIKEGSTDNVVEENICTNQLDENSACYDVRGDDNTIRYNVATKCMGAGVRLGGWDVDGYAHGQGNHVYGNDFVDCGEGSIKVETEGQGDVCDNTCED 657
++ FT++G++G G+ + + + VYV+G + GFVM + ++N GGECVRL+ V AEI +NT NCG++D++F + KNGE IY+GTSSNQW D PD N + N TNGNECVDIKEG+ N+VE NIC+ Q D NSA +D RGD N RYNV+ GAGVRLGG VDG +G N VYGN + + +K+ Q VC N D
Sbjct: 122 LRNFTIDGQVGSGNTMEDFRDILVYVKGNEPQQGPTGFVMRAMSLKNAGGECVRLRYYVTEAEIFDNTFYNCGVYDFKFNNGGKNGEAIYVGTSSNQWDDGKNPTGGPDPSNHNWIHHNKFLTNGNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYNVSHDNKGAGVRLGGNTVDGRQYGVNNQVYGNLLYNNAQAGVKLMAAPQEKVCGNPTSD 347 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63774.13949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig63774.13949.1 >prot_H-elongata_contig63774.13949.1 ID=prot_H-elongata_contig63774.13949.1|Name=mRNA_H-elongata_contig63774.13949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp MQGFTVEGKIGDGSDADAYINKCVYVEGEDSDLDGFVMEGLLIQNCGGECback to top mRNA from alignment at H-elongata_contig63774:724..2986+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig63774.13949.1 ID=mRNA_H-elongata_contig63774.13949.1|Name=mRNA_H-elongata_contig63774.13949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2263bp|location=Sequence derived from alignment at H-elongata_contig63774:724..2986+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig63774:724..2986+ >mRNA_H-elongata_contig63774.13949.1 ID=mRNA_H-elongata_contig63774.13949.1|Name=mRNA_H-elongata_contig63774.13949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig63774:724..2986+ (Himanthalia elongata Himel1 dioecious)back to top |