mRNA_H-elongata_contig63438.13918.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: D8LSG7_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG7_ECTSI) HSP 1 Score: 292 bits (747), Expect = 2.340e-93 Identity = 167/275 (60.73%), Postives = 198/275 (72.00%), Query Frame = 1
Query: 1 VYALFWSLSLAKTSRGLDGSIYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARS--------------------GGRHAGLYPYDGVVFVEGFCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSYSVVFQ 765
V A+F S G G +YR +CEGGPR ++ +R FGE G V G+W++N+PNRL+QGFYM+IVN SFICFIFEGFPRLPNDV WPYH GYLVMA+CIGSF++AC + PG VR A +GA + GGRHAGLYP+DGVVFVEGFCKTC++ KPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYR FLLFL++H MLWYGT L G L S+V+K+KLLT +FY K+S+TY++ SYSVV Q
Sbjct: 16 VLAIFLMFFADPESHGYGGQLYRLVCEGGPRMLSAGMRLVFGEACAGKVSECGNWVMNKPNRLMQGFYMVIVNCSFICFIFEGFPRLPNDVLPWPYHTATGYLVMAACIGSFVLACNVPPGSVRAPAA-----EGASNRXXXXXXXXXXXXAPGRNAGGGRHAGLYPHDGVVFVEGFCKTCQVAKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRIFLLFLIIHSSMLWYGTVLTYGILKSVVMKRKLLTARFYHKRSKTYVRGSYSVVLQ 285
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: A0A6H5L085_9PHAE (Palmitoyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L085_9PHAE) HSP 1 Score: 284 bits (727), Expect = 9.600e-91 Identity = 166/271 (61.25%), Postives = 196/271 (72.32%), Query Frame = 1
Query: 1 VYALFWSLSLAKTSRGLDGSIYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVVRPIEA-----------GDE-----TGDGARSGGRHAGLYPYDGVVFVEGFCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSYSVVFQ 765
V A+F S G G +YR +CEGGPR ++ +R FGE G V G+ ++N+PNRL+QGFYM+IVN SFICFIFEGFPRLPNDV WPYH YLVMA+CIGSF++AC + PG VR A G+E G A GGRHAGLYP+DGVVFVEGFCKTC++ KPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYR FLLFL++H MLWYGT L G L S+V+K+KLLT +FY K+S+TY++ SY VV Q
Sbjct: 16 VLAIFLMFIADPESHGYGGQLYRLVCEGGPRMLSTGMRLVFGEACAGRVSECGNLVMNKPNRLMQGFYMVIVNCSFICFIFEGFPRLPNDVLPWPYHTVTSYLVMAACIGSFLLACNVPPGSVRAPAAEGASNRRRGGAGEEGVAAAPGQNA-GGGRHAGLYPHDGVVFVEGFCKTCQVAKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRIFLLFLIVHSSMLWYGTVLTYGILKSVVMKRKLLTARFYHKRSKTYVRGSYGVVLQ 285
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: A0A835ZHT4_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHT4_9STRA) HSP 1 Score: 134 bits (336), Expect = 3.830e-33 Identity = 82/218 (37.61%), Postives = 111/218 (50.92%), Query Frame = 1
Query: 67 RFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPG--VVRPIEAGDETGDGARSGGRHAGLYPYDGVVFVEG-FCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKF 711
R + GP + FG+R ER+ ++ PN LLQ FY+++VNG F+ F+ G+P LPN+ + P H + +LVMA+CI +F +ACT+ PG V+ A D YP DGV+F+ G C TCK+ K ARSKH GE NYR FLLFL+ H MLWY L+GG L S+ K+L + F
Sbjct: 34 RALLHTGPNKLLGAATAVFGDR----PERLYNFCCFTPNPLLQIFYLVLVNGGFLMFMVHGYPLLPNE-YMGPVHLVLPFLVMAACILTFTLACTVEPGHLTVQNAAAYDN--------------YPADGVIFLPGKVCPTCKVPKLARSKHCRVCNRCVSRFDHHCGWLNQCVGERNYRFFLLFLVTHVAMLWYAAALLGGILLSVANAKRLWSATF 232
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: A0A7S4RE85_9DINO (Palmitoyltransferase (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RE85_9DINO) HSP 1 Score: 124 bits (311), Expect = 8.590e-30 Identity = 92/235 (39.15%), Postives = 140/235 (59.57%), Query Frame = 1
Query: 61 IYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARSGGRHAGLYPYDGVVFVEGFCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSYSVVFQ 765
+YR +C P + VL + G+R ++ + ++ R N ++Q FY+ +V G F+ F+ GFP +PN + +H+ +G+ V A+C+G + AC PG V P+ DE + +YP+D +F CKTC+++KPARSKHXXXXXXXXXXXXXXXXXXXXXXG N++ FL+FL +H ++ +YG + L+ IV +K L F +++ K+S +V Q
Sbjct: 48 LYRMVCVHLPWALKKVLEKCCGKRAPAALDWLWTYVCYRSNPIVQIFYLCVVVGGFLTFVAHGFPHIPNRL-VGAFHKYVGFGVFATCLGVWWRACRTDPGTVTPLNV-DELCE----------VYPWDEQIFTSAQCKTCELVKPARSKHXXXXXXXXXXXXXXXXXXXXXXGVGNHKYFLMFLFVHLVLCFYGMGMGTTILYDIVTQKDLFNAVFVDPQTKQKHKASKLIVMQ 270
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: A0A078B2C5_STYLE (Palmitoyltransferase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B2C5_STYLE) HSP 1 Score: 107 bits (267), Expect = 1.130e-23 Identity = 90/231 (38.96%), Postives = 125/231 (54.11%), Query Frame = 1
Query: 70 FICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARSGGRHAGLYPYDGVVFVEGF-CKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSYSVV 759
F+ +G P + V + G+RFV VER+ WI N L+Q Y + G F ++ GF R + YH+ G ++M C SFI A +PGV++ D + YDG++F +G C+TCKI KPARSKH XXXXXXXXXXXXXXXXXXXXXG NYR FL+F+ H ++ YG + + I+ ++ L +F + K+ I S +V
Sbjct: 4 FLFKGLPNILRSVGAKICGQRFVDRVERMITWICFSTNPLIQILYCFLAGGGFYIYVKIGFNRFIPGPYVDNYHKTTGTIIMIICYISFIFASWTNPGVIKKTNVKDAIR-----------RFDYDGILFKKGEECRTCKIPKPARSKHCXXXXXXXXXXXXXXXXXXXXXGYYNYRYFLIFIFSHAVICTYGAVIGCLIFYGIIEEQNLFKAQFKNLKTGESISPSLYIV 223
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: A0A1R2CLR9_9CILI (Palmitoyltransferase n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CLR9_9CILI) HSP 1 Score: 101 bits (252), Expect = 1.190e-21 Identity = 82/252 (32.54%), Postives = 129/252 (51.19%), Query Frame = 1
Query: 10 LFWSLSLAKTSRGLDGSIYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARSGGRHAGLYPYDGVVFVEGFCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSYSVVFQ 765
+F L ++ G ++ R I P + ++ + G + + +I+N PN Q Y+++ G +I + GFP +PN + +H +G L+ + +FI AC + PG++ + H ++ YD ++ C +CKI KPARSKHXXXXXXXXXXXXXXX G NY+ FL F+L H ++ +Y + + I+ K+KLLT F K R + KSS++V+FQ
Sbjct: 17 IFVLLCVSPYGTGPISALSRMIFVHIPNYSYLLSTKILGVQGTIKAKYYFMYIINEPNPFFQIVYLVLSIGGYIIYFLYGFPFIPNP-YVSEFHMYIGSLLYFIALITFICACIVPPGIIDKSNLKN-----------HLAMFAYDNALYKPNDCSSCKIQKPARSKHXXXXXXXXXXXXXXXIWINQCVGYANYKYFLAFILSHSLICFYAGQVGVMIMMHIIYKEKLLTATFTDAKGREF-KSSWTVIFQ 255
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: A0A813DUJ8_POLGL (Palmitoyltransferase (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DUJ8_POLGL) HSP 1 Score: 103 bits (258), Expect = 1.250e-21 Identity = 59/195 (30.26%), Postives = 94/195 (48.21%), Query Frame = 1
Query: 61 IYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARSGGRHAGLYPYDGVVFVEGFCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYG 645
+YR +C P + L + FG+R L++RV ++ N L+Q FY+++V G + F G+P +P+ + + H+ +G+++ +C+ + ACT PG V DE Y +D +FV G CKTC+++KPARSKH G N+R FL FL H + +YG
Sbjct: 16 LYRLLCMQLPSLLKKGLEKCFGKRAPELLDRVWVYLCFTSNPLVQIFYLLVVVGGYATFAAYGYPHIPSRLLS-SVHKYVGFVLFTACLAIWAKACTTDPGTVTAANV-DEL----------CKTYEWDQQIFVSGECKTCELVKPARSKHCSLCRKCVARFDHHCIWINNCVGVGNHRYFLWFLFAHLAICFYG 198
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: B8BUP3_THAPS (Palmitoyltransferase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUP3_THAPS) HSP 1 Score: 101 bits (252), Expect = 2.040e-21 Identity = 72/239 (30.13%), Postives = 106/239 (44.35%), Query Frame = 1
Query: 52 DGSIYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVV--RPIEAGDETGDGARSGGRHAGLYPYDGVVFVEGFCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSYSVVF 762
+I F + P + L R G++ V VE+ D R LQ Y+++V GS+ G+ + + H+ GY V A+C+ S+ AC SPG V R I D YPYD +++ C T I K ARSK+ GE NYR FLLFL++H M +YGT+ +G L+ V+ K LL F++ + T + + Y +VF
Sbjct: 28 SSTIAGFFMKDLPSLLFQQLERIIGKKGVATVEKWTD-------RSLQLVYLVVVLGSWSIIFTYGYEAIQKSNYISNNHQYAGYAVFAACMSSWHYACHTSPGSVTSRTIALYDH--------------YPYDSILYYNKQCPTLNIRKVARSKYDRFSKQHVPRFDHFCGWLNQAVGELNYRWFLLFLMVHVGMCYYGTWAMGTVLYGEVVDKNLLNATFFNAVTGTEVNADYIIVF 245
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: A0CAP2_PARTE (Palmitoyltransferase n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0CAP2_PARTE) HSP 1 Score: 100 bits (250), Expect = 4.270e-21 Identity = 85/257 (33.07%), Postives = 139/257 (54.09%), Query Frame = 1
Query: 7 ALFWSLSLAKTSRGLDGSIYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEP-MGYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARSGGRHAGLYP--YDGVVFV-EGFCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSYSVVFQ 765
+L+ + + S GL G + RF+ P + ++ GER + R D+ + L+Q FY+++ G ++ +++ GF L N+ + + +G + C SF AC PG++ + + Y YD VV++ E CKTC I+KPARSK XXXXXXXXXXXXXXXXXXX G++NY+ F+ F++ H I+ YG +L LW I++K+KLL +F ++ +++++ ++ Q
Sbjct: 17 SLYLLVCVDPNSPGLLGMMNRFVFNTIP----AIFKKILGERIFKVFSRGIDYFFYSNHPLVQIFYVLVAVGGYLVYLYFGFLELFNNNPLVSHLDTAIGSTMALFCFYSFFQACRYKPGIINK-----------ENNKEYVNQYKEYYDNVVYLKENHCKTCNIIKPARSKXXXXXXXXXXXXXXXXXXXXQCVGQKNYKYFVKFIITHAILCDYGAYLGFRCLWGIIIKEKLLEAQFRDPVTKQRLQATWGIIAQ 258
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: W4GLS7_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLS7_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 3.940e-20 Identity = 89/223 (39.91%), Postives = 127/223 (56.95%), Query Frame = 1
Query: 46 GLDGSIYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARSGGRHAGLYPYDGVVFVEG-FCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKF 711
G+ S+ RF+ + P + + VL + G V D++LNRPN L+Q Y+ +V G + FI G P LPN ++ + G +A+ + +F+ CT S GVV AR Y +D V+++ G CKTC + KPARSKHXXXXXXXXXXXXXXXXXXXXX GE+NYR F+LF++ + ++ YG ++ TL V+ L +K+
Sbjct: 61 GVLSSLRRFVLDTLPSWSSDVLLKVCGPSIHSDVVDAIDYVLNRPNPLMQVVYLHLVIGGYALFIVFGQPLLPNVYLSYNHVYYAGGAALAALV-TFLQVCTTSAGVVN-----------ARDSLVQYHAYEFDQVMYIRGNACKTCHLNKPARSKHXXXXXXXXXXXXXXXXXXXXXVGEQNYRYFVLFIVSNSLLCVYGGIILLYTLLGEVVTLHLFESKY 271 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig63438.13918.1 >prot_H-elongata_contig63438.13918.1 ID=prot_H-elongata_contig63438.13918.1|Name=mRNA_H-elongata_contig63438.13918.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp VYALFWSLSLAKTSRGLDGSIYRFICEGGPRFINVVLRRAFGERFVGLVEback to top mRNA from alignment at H-elongata_contig63438:335..3393+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig63438.13918.1 ID=mRNA_H-elongata_contig63438.13918.1|Name=mRNA_H-elongata_contig63438.13918.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3059bp|location=Sequence derived from alignment at H-elongata_contig63438:335..3393+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig63438:335..3393+ >mRNA_H-elongata_contig63438.13918.1 ID=mRNA_H-elongata_contig63438.13918.1|Name=mRNA_H-elongata_contig63438.13918.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig63438:335..3393+ (Himanthalia elongata Himel1 dioecious)back to top |