mRNA_H-elongata_contig63438.13918.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63438.13918.1
Unique NamemRNA_H-elongata_contig63438.13918.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: D8LSG7_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG7_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 2.340e-93
Identity = 167/275 (60.73%), Postives = 198/275 (72.00%), Query Frame = 1
Query:    1 VYALFWSLSLAKTSRGLDGSIYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARS--------------------GGRHAGLYPYDGVVFVEGFCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSYSVVFQ 765
            V A+F        S G  G +YR +CEGGPR ++  +R  FGE   G V   G+W++N+PNRL+QGFYM+IVN SFICFIFEGFPRLPNDV  WPYH   GYLVMA+CIGSF++AC + PG VR   A     +GA +                    GGRHAGLYP+DGVVFVEGFCKTC++ KPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYR FLLFL++H  MLWYGT L  G L S+V+K+KLLT +FY K+S+TY++ SYSVV Q
Sbjct:   16 VLAIFLMFFADPESHGYGGQLYRLVCEGGPRMLSAGMRLVFGEACAGKVSECGNWVMNKPNRLMQGFYMVIVNCSFICFIFEGFPRLPNDVLPWPYHTATGYLVMAACIGSFVLACNVPPGSVRAPAA-----EGASNRXXXXXXXXXXXXAPGRNAGGGRHAGLYPHDGVVFVEGFCKTCQVAKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRIFLLFLIIHSSMLWYGTVLTYGILKSVVMKRKLLTARFYHKRSKTYVRGSYSVVLQ 285          
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: A0A6H5L085_9PHAE (Palmitoyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L085_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 9.600e-91
Identity = 166/271 (61.25%), Postives = 196/271 (72.32%), Query Frame = 1
Query:    1 VYALFWSLSLAKTSRGLDGSIYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVVRPIEA-----------GDE-----TGDGARSGGRHAGLYPYDGVVFVEGFCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSYSVVFQ 765
            V A+F        S G  G +YR +CEGGPR ++  +R  FGE   G V   G+ ++N+PNRL+QGFYM+IVN SFICFIFEGFPRLPNDV  WPYH    YLVMA+CIGSF++AC + PG VR   A           G+E      G  A  GGRHAGLYP+DGVVFVEGFCKTC++ KPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYR FLLFL++H  MLWYGT L  G L S+V+K+KLLT +FY K+S+TY++ SY VV Q
Sbjct:   16 VLAIFLMFIADPESHGYGGQLYRLVCEGGPRMLSTGMRLVFGEACAGRVSECGNLVMNKPNRLMQGFYMVIVNCSFICFIFEGFPRLPNDVLPWPYHTVTSYLVMAACIGSFLLACNVPPGSVRAPAAEGASNRRRGGAGEEGVAAAPGQNA-GGGRHAGLYPHDGVVFVEGFCKTCQVAKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRIFLLFLIVHSSMLWYGTVLTYGILKSVVMKRKLLTARFYHKRSKTYVRGSYGVVLQ 285          
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: A0A835ZHT4_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHT4_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.830e-33
Identity = 82/218 (37.61%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   67 RFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPG--VVRPIEAGDETGDGARSGGRHAGLYPYDGVVFVEG-FCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKF 711
            R +   GP  +       FG+R     ER+ ++    PN LLQ FY+++VNG F+ F+  G+P LPN+ +  P H  + +LVMA+CI +F +ACT+ PG   V+   A D               YP DGV+F+ G  C TCK+ K ARSKH                      GE NYR FLLFL+ H  MLWY   L+GG L S+   K+L +  F
Sbjct:   34 RALLHTGPNKLLGAATAVFGDR----PERLYNFCCFTPNPLLQIFYLVLVNGGFLMFMVHGYPLLPNE-YMGPVHLVLPFLVMAACILTFTLACTVEPGHLTVQNAAAYDN--------------YPADGVIFLPGKVCPTCKVPKLARSKHCRVCNRCVSRFDHHCGWLNQCVGERNYRFFLLFLVTHVAMLWYAAALLGGILLSVANAKRLWSATF 232          
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: A0A7S4RE85_9DINO (Palmitoyltransferase (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RE85_9DINO)

HSP 1 Score: 124 bits (311), Expect = 8.590e-30
Identity = 92/235 (39.15%), Postives = 140/235 (59.57%), Query Frame = 1
Query:   61 IYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARSGGRHAGLYPYDGVVFVEGFCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSYSVVFQ 765
            +YR +C   P  +  VL +  G+R    ++ +  ++  R N ++Q FY+ +V G F+ F+  GFP +PN +    +H+ +G+ V A+C+G +  AC   PG V P+   DE  +          +YP+D  +F    CKTC+++KPARSKHXXXXXXXXXXXXXXXXXXXXXXG  N++ FL+FL +H ++ +YG  +    L+ IV +K L    F   +++   K+S  +V Q
Sbjct:   48 LYRMVCVHLPWALKKVLEKCCGKRAPAALDWLWTYVCYRSNPIVQIFYLCVVVGGFLTFVAHGFPHIPNRL-VGAFHKYVGFGVFATCLGVWWRACRTDPGTVTPLNV-DELCE----------VYPWDEQIFTSAQCKTCELVKPARSKHXXXXXXXXXXXXXXXXXXXXXXGVGNHKYFLMFLFVHLVLCFYGMGMGTTILYDIVTQKDLFNAVFVDPQTKQKHKASKLIVMQ 270          
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: A0A078B2C5_STYLE (Palmitoyltransferase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B2C5_STYLE)

HSP 1 Score: 107 bits (267), Expect = 1.130e-23
Identity = 90/231 (38.96%), Postives = 125/231 (54.11%), Query Frame = 1
Query:   70 FICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARSGGRHAGLYPYDGVVFVEGF-CKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSYSVV 759
            F+ +G P  +  V  +  G+RFV  VER+  WI    N L+Q  Y  +  G F  ++  GF R     +   YH+  G ++M  C  SFI A   +PGV++     D               + YDG++F +G  C+TCKI KPARSKH XXXXXXXXXXXXXXXXXXXXXG  NYR FL+F+  H ++  YG  +     + I+ ++ L   +F + K+   I  S  +V
Sbjct:    4 FLFKGLPNILRSVGAKICGQRFVDRVERMITWICFSTNPLIQILYCFLAGGGFYIYVKIGFNRFIPGPYVDNYHKTTGTIIMIICYISFIFASWTNPGVIKKTNVKDAIR-----------RFDYDGILFKKGEECRTCKIPKPARSKHCXXXXXXXXXXXXXXXXXXXXXGYYNYRYFLIFIFSHAVICTYGAVIGCLIFYGIIEEQNLFKAQFKNLKTGESISPSLYIV 223          
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: A0A1R2CLR9_9CILI (Palmitoyltransferase n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CLR9_9CILI)

HSP 1 Score: 101 bits (252), Expect = 1.190e-21
Identity = 82/252 (32.54%), Postives = 129/252 (51.19%), Query Frame = 1
Query:   10 LFWSLSLAKTSRGLDGSIYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARSGGRHAGLYPYDGVVFVEGFCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSYSVVFQ 765
            +F  L ++    G   ++ R I    P +  ++  +  G +     +    +I+N PN   Q  Y+++  G +I +   GFP +PN  +   +H  +G L+    + +FI AC + PG++      +           H  ++ YD  ++    C +CKI KPARSKHXXXXXXXXXXXXXXX       G  NY+ FL F+L H ++ +Y   +    +  I+ K+KLLT  F   K R + KSS++V+FQ
Sbjct:   17 IFVLLCVSPYGTGPISALSRMIFVHIPNYSYLLSTKILGVQGTIKAKYYFMYIINEPNPFFQIVYLVLSIGGYIIYFLYGFPFIPNP-YVSEFHMYIGSLLYFIALITFICACIVPPGIIDKSNLKN-----------HLAMFAYDNALYKPNDCSSCKIQKPARSKHXXXXXXXXXXXXXXXIWINQCVGYANYKYFLAFILSHSLICFYAGQVGVMIMMHIIYKEKLLTATFTDAKGREF-KSSWTVIFQ 255          
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: A0A813DUJ8_POLGL (Palmitoyltransferase (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DUJ8_POLGL)

HSP 1 Score: 103 bits (258), Expect = 1.250e-21
Identity = 59/195 (30.26%), Postives = 94/195 (48.21%), Query Frame = 1
Query:   61 IYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARSGGRHAGLYPYDGVVFVEGFCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYG 645
            +YR +C   P  +   L + FG+R   L++RV  ++    N L+Q FY+++V G +  F   G+P +P+ + +   H+ +G+++  +C+  +  ACT  PG V      DE              Y +D  +FV G CKTC+++KPARSKH                      G  N+R FL FL  H  + +YG
Sbjct:   16 LYRLLCMQLPSLLKKGLEKCFGKRAPELLDRVWVYLCFTSNPLVQIFYLLVVVGGYATFAAYGYPHIPSRLLS-SVHKYVGFVLFTACLAIWAKACTTDPGTVTAANV-DEL----------CKTYEWDQQIFVSGECKTCELVKPARSKHCSLCRKCVARFDHHCIWINNCVGVGNHRYFLWFLFAHLAICFYG 198          
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: B8BUP3_THAPS (Palmitoyltransferase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUP3_THAPS)

HSP 1 Score: 101 bits (252), Expect = 2.040e-21
Identity = 72/239 (30.13%), Postives = 106/239 (44.35%), Query Frame = 1
Query:   52 DGSIYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVV--RPIEAGDETGDGARSGGRHAGLYPYDGVVFVEGFCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSYSVVF 762
              +I  F  +  P  +   L R  G++ V  VE+  D       R LQ  Y+++V GS+      G+  +    +    H+  GY V A+C+ S+  AC  SPG V  R I   D               YPYD +++    C T  I K ARSK+                      GE NYR FLLFL++H  M +YGT+ +G  L+  V+ K LL   F++  + T + + Y +VF
Sbjct:   28 SSTIAGFFMKDLPSLLFQQLERIIGKKGVATVEKWTD-------RSLQLVYLVVVLGSWSIIFTYGYEAIQKSNYISNNHQYAGYAVFAACMSSWHYACHTSPGSVTSRTIALYDH--------------YPYDSILYYNKQCPTLNIRKVARSKYDRFSKQHVPRFDHFCGWLNQAVGELNYRWFLLFLMVHVGMCYYGTWAMGTVLYGEVVDKNLLNATFFNAVTGTEVNADYIIVF 245          
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: A0CAP2_PARTE (Palmitoyltransferase n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0CAP2_PARTE)

HSP 1 Score: 100 bits (250), Expect = 4.270e-21
Identity = 85/257 (33.07%), Postives = 139/257 (54.09%), Query Frame = 1
Query:    7 ALFWSLSLAKTSRGLDGSIYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEP-MGYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARSGGRHAGLYP--YDGVVFV-EGFCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSYSVVFQ 765
            +L+  + +   S GL G + RF+    P     + ++  GER   +  R  D+     + L+Q FY+++  G ++ +++ GF  L N+     + +  +G  +   C  SF  AC   PG++              +   +   Y   YD VV++ E  CKTC I+KPARSK XXXXXXXXXXXXXXXXXXX   G++NY+ F+ F++ H I+  YG +L    LW I++K+KLL  +F    ++  +++++ ++ Q
Sbjct:   17 SLYLLVCVDPNSPGLLGMMNRFVFNTIP----AIFKKILGERIFKVFSRGIDYFFYSNHPLVQIFYVLVAVGGYLVYLYFGFLELFNNNPLVSHLDTAIGSTMALFCFYSFFQACRYKPGIINK-----------ENNKEYVNQYKEYYDNVVYLKENHCKTCNIIKPARSKXXXXXXXXXXXXXXXXXXXXQCVGQKNYKYFVKFIITHAILCDYGAYLGFRCLWGIIIKEKLLEAQFRDPVTKQRLQATWGIIAQ 258          
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Match: W4GLS7_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLS7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.940e-20
Identity = 89/223 (39.91%), Postives = 127/223 (56.95%), Query Frame = 1
Query:   46 GLDGSIYRFICEGGPRFINVVLRRAFGERFVGLVERVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPMGYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARSGGRHAGLYPYDGVVFVEG-FCKTCKILKPARSKHXXXXXXXXXXXXXXXXXXXXXXGEENYRSFLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKF 711
            G+  S+ RF+ +  P + + VL +  G      V    D++LNRPN L+Q  Y+ +V G +  FI  G P LPN   ++ +    G   +A+ + +F+  CT S GVV            AR        Y +D V+++ G  CKTC + KPARSKHXXXXXXXXXXXXXXXXXXXXX GE+NYR F+LF++ + ++  YG  ++  TL   V+   L  +K+
Sbjct:   61 GVLSSLRRFVLDTLPSWSSDVLLKVCGPSIHSDVVDAIDYVLNRPNPLMQVVYLHLVIGGYALFIVFGQPLLPNVYLSYNHVYYAGGAALAALV-TFLQVCTTSAGVVN-----------ARDSLVQYHAYEFDQVMYIRGNACKTCHLNKPARSKHXXXXXXXXXXXXXXXXXXXXXVGEQNYRYFVLFIVSNSLLCVYGGIILLYTLLGEVVTLHLFESKY 271          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63438.13918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSG7_ECTSI2.340e-9360.73Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L085_9PHAE9.600e-9161.25Palmitoyltransferase (Fragment) n=1 Tax=Ectocarpus... [more]
A0A835ZHT4_9STRA3.830e-3337.61Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S4RE85_9DINO8.590e-3039.15Palmitoyltransferase (Fragment) n=1 Tax=Alexandriu... [more]
A0A078B2C5_STYLE1.130e-2338.96Palmitoyltransferase n=1 Tax=Stylonychia lemnae Ta... [more]
A0A1R2CLR9_9CILI1.190e-2132.54Palmitoyltransferase n=1 Tax=Stentor coeruleus Tax... [more]
A0A813DUJ8_POLGL1.250e-2130.26Palmitoyltransferase (Fragment) n=1 Tax=Polarella ... [more]
B8BUP3_THAPS2.040e-2130.13Palmitoyltransferase n=1 Tax=Thalassiosira pseudon... [more]
A0CAP2_PARTE4.270e-2133.07Palmitoyltransferase n=1 Tax=Paramecium tetraureli... [more]
W4GLS7_9STRA3.940e-2039.91Palmitoyltransferase n=1 Tax=Aphanomyces astaci Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63438contigH-elongata_contig63438:335..3393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.7
Seed ortholog evalue1.6e-76
Seed eggNOG ortholog2880.D8LSG7
Preferred nameZDHHC4
KEGG koko:K18932,ko:K20003
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0012505,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1312@2759
EC2.3.1.225
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Hectar predicted targeting categorysignal peptide
Exons4
Model size765
Cds size765
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63438.13918.1prot_H-elongata_contig63438.13918.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63438 335..3393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931017.642389-CDS-H-elongata_contig63438:334..5801622931017.642389-CDS-H-elongata_contig63438:334..580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63438 335..580 +
1691679663.9498665-CDS-H-elongata_contig63438:334..5801691679663.9498665-CDS-H-elongata_contig63438:334..580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63438 335..580 +
1622931017.66162-CDS-H-elongata_contig63438:1153..14011622931017.66162-CDS-H-elongata_contig63438:1153..1401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63438 1154..1401 +
1691679663.9629657-CDS-H-elongata_contig63438:1153..14011691679663.9629657-CDS-H-elongata_contig63438:1153..1401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63438 1154..1401 +
1622931017.6803193-CDS-H-elongata_contig63438:2364..24881622931017.6803193-CDS-H-elongata_contig63438:2364..2488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63438 2365..2488 +
1691679663.9739902-CDS-H-elongata_contig63438:2364..24881691679663.9739902-CDS-H-elongata_contig63438:2364..2488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63438 2365..2488 +
1622931017.6965659-CDS-H-elongata_contig63438:3246..33931622931017.6965659-CDS-H-elongata_contig63438:3246..3393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63438 3247..3393 +
1691679663.98473-CDS-H-elongata_contig63438:3246..33931691679663.98473-CDS-H-elongata_contig63438:3246..3393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63438 3247..3393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63438.13918.1

>prot_H-elongata_contig63438.13918.1 ID=prot_H-elongata_contig63438.13918.1|Name=mRNA_H-elongata_contig63438.13918.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp
VYALFWSLSLAKTSRGLDGSIYRFICEGGPRFINVVLRRAFGERFVGLVE
RVGDWILNRPNRLLQGFYMIIVNGSFICFIFEGFPRLPNDVHTWPYHEPM
GYLVMASCIGSFIMACTISPGVVRPIEAGDETGDGARSGGRHAGLYPYDG
VVFVEGFCKTCKILKPARSKHCRVCNVCVPRFDHHCAWLNQCVGEENYRS
FLLFLLMHCIMLWYGTFLIGGTLWSIVLKKKLLTTKFYSKKSRTYIKSSY
SVVFQ
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mRNA from alignment at H-elongata_contig63438:335..3393+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63438.13918.1 ID=mRNA_H-elongata_contig63438.13918.1|Name=mRNA_H-elongata_contig63438.13918.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3059bp|location=Sequence derived from alignment at H-elongata_contig63438:335..3393+ (Himanthalia elongata Himel1 dioecious)
GTTTATGCTCTCTTCTGGTCCCTGTCTCTTGCCAAAACCAGTCGTGGTCT GGACGGCTCGATTTACCGTTTTATCTGCGAGGGCGGCCCGCGGTTTATCA ACGTCGTCCTGCGGCGAGCTTTCGGAGAGCGGTTTGTGGGGCTCGTGGAG AGAGTCGGAGATTGGATACTGAACAGGCCCAACCGCTTGCTCCAGGGGTT CTACATGATAATCGTGAACGGCTCCTTTATATGCTTCATCTTCGAGGTGC TAACTCGGGCATGCTGGGGAGTGCGAACGACTTATTCCGCCCCCCACTCG CCCCCTGGTTCGGGCTTTGGAGCCTAATTCAAGGATACCGTACTGTCTCA ACAGCTGTGCTAACCTTTTGAGGGCATACGCCTCTTTGTTCCATGAAACC TCTCTCCTCTTTCTTCGTTTTATTGTAAAACCATACAGTCATGGTCGTAA ACTTAAAAAAAATTAAGGCTGTAGAGGTTAGCCAGTAGAGAAGATGCTTA ACGAAACAATCTTCTGTTTTTCTAAAACCTCAAATTTCTCGTCGCTCGGC TGGCGTGGATAGATACATTCGCTATGAGTTTCAAGACAACGAGAGCACGT TATTTCCGCCGCATGATGTCATCGGAAGAGGCACGCGCTCGCGAAAGTCG CCCAAGACTCGTTGCTGCATACTTCGCATTTGCAATGGTAGTTGGGTCTA TCGGTGGCACTTGTGTGTCTCACGCCTTCCGGGCTTTGGCCGCTCTTAAT AGTTGGATGACGCTGCCGCTGCCGACCTGGTGTGGTGTGAAACAATCTCC GCCGCTTGCCGCACAACAGGGATTCCCCCGTCTTCCGAATGATGTCCACA CGTGGCCGTATCACGAGCCGATGGGATACCTGGTGATGGCCTCCTGTATC GGCTCGTTCATCATGGCGTGCACGATTTCGCCGGGAGTTGTAAGACCAAT TGAGGCGGGGGATGAAACAGGGGATGGCGCACGGAGCGGCGGGCGACACG CAGGGTTGTACCCTTACGATGGAGTCGTGTTTGTGGAGGGCTTCTGCAAG ACCTGCAAGATACTAAAGTGAGAGGGCGACAACGGCTTGGATAAGGAGAT GGAGGGTGCGATATGCGTAAACTCGGCCGCCTGCTAAGCTCCAGCAGGCA TTGCTAACTGCCAAAGTGGCCACGCTCCAGGATGTGCGTCGGATATTTTT CGTTCGTTACGCGTGATACACCTTGGTAAAAAGATGTATACAGTACTTAA AAAATGCATGAGTTCTTACATGGAAAGACATAAACAGCAATCTCCTCCCT GACCGATCGAGCACGCGTTTCTTCTCGCGATCTCATCCTTGAACCACCTT TTAATTTATTGTGAATCTCGCGACGCCGTACATTACCCTCCCGCCCCTCC CCCCCCCCTCCCCCCTCTCCCGCACACAATTGCACGCGGGAGTAGTACTC CGCTCTTAGTACAATGCCGCCCCGAGTTGACATGATCATGGTTTAATCGA AAGTTTAGGTCCTTTTGGTTGTCTAATGTACTTTTAGAACAAGTAAAGCA ATCACGTACTTTGCATTCAAGTTATATATAGTTGTATATATATATTTATA TATATATATACTGGTATATCATTTTTTTTATTAGTTATTGTTTGGGGTAA TATTTTGTTTGGGCTTTGGTCTTTATTAGTTTTTATTTGGGTTTCCTCCT TTACGTATATAGGAGTAGTCGATCACGCACCGTCAAATCATATCATATCC CCATTTTGTCGCAGATCGCCGTAGCGATTCGACTCTACCACAAGAAGGTT ATCTATTGTTTCGTGATACACCTATTCGCGCTGTCACCAGCTTTGCCGTA CTGTCATGGAGATCAAGCGAGCACGCGCGCGCACTACCGCCTCGCTGAAA AATATTAAAGGACGAAAGAGATAGAAAGACAGGCAAGCTCCAAGAGAAAT AATGTTTTAACTGTCTAGACCAACGTAATTCACCGAAATCTCGGGGAAAA CCACGACAACCCCCCCCCCTAAAAAAACAGACCGGCGCGGTCGAAGCACT GCCGGGTGTGCAACGTTTGCGTGCCAAGGTTCGACCACCACTGCGCGTGG CTCAACCAGTGCGTCGGAGAAGAAAACTACCGCAGTTTCCTTCTCTTTTT GCTGGTGAGTATTTCCTATCATTATTTCTTCTCGTCTATCCGTTTTCGAC GCCGCTCCTCTGCGCTCAAGCCGAGTTCACTTTCCCCGCGAGTATTGCAA CGTGCGGGGAGCCCTTCCGCGATGTACGCGTGACACGAGTTTTATGGACT GTAGCTCGTGAGGTTGGTTTGGTGCATATTTTGGGTGGGTTGGTGGTGTA CTTCGACCTGATTCCCCGCCACCCCCTTCCTCTTTCCCGAGGATGCGTGG TCAGTAGTATTGACAGCTAAGGCATGTAAAAACTTTATTACCTCCTCCCT CCATACCCTGAGGAAATGTGTAAGTGTAAGTGTAAGATCGCCACGACGTG TTTTTATCTCATTTTTCTTTCTCGTTTCAAGGTAGTTACCAAAAGTTCTT TGTTAGGTTACGGAGCTTGCCATGTGACTTTCGTATGTGTCAGTGCTCGG CTGTTGCCCAATTCGTTTGGGCACACGCCGAGCGTCGCTGACTACGATGA GCTAGGTTTCGGCTCGAGCGATCGATAGACCACGCCAGGCCGGGGACGGG AGGGGTAGGAGGCCACCGCACCTTTTGTGCTGTACCTTTCTCTCTCTGTA ACTCTCTCTCTCTCTTTCTGTACTAACCCTTCTGGAACTGAAGGTCAAGT TTTATATTGAATTTAGTATTAAAAAAACATATTCGAGTTTCATAGGGGTT AACCTCATCCTTCACTCAGTCTTAGACGACAAACACACCACCTCTTCTAC TATCCTCCGCAGATGCACTGTATTATGCTATGGTACGGCACCTTCCTCAT CGGCGGTACCCTGTGGTCGATCGTCCTCAAGAAGAAGCTCCTGACGACCA AGTTCTACAGCAAGAAATCCAGGACTTACATCAAGAGCAGCTATTCCGTG GTGTTCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig63438:335..3393+

>mRNA_H-elongata_contig63438.13918.1 ID=mRNA_H-elongata_contig63438.13918.1|Name=mRNA_H-elongata_contig63438.13918.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig63438:335..3393+ (Himanthalia elongata Himel1 dioecious)
GTTTATGCTCTCTTCTGGTCCCTGTCTCTTGCCAAAACCAGTCGTGGTCT
GGACGGCTCGATTTACCGTTTTATCTGCGAGGGCGGCCCGCGGTTTATCA
ACGTCGTCCTGCGGCGAGCTTTCGGAGAGCGGTTTGTGGGGCTCGTGGAG
AGAGTCGGAGATTGGATACTGAACAGGCCCAACCGCTTGCTCCAGGGGTT
CTACATGATAATCGTGAACGGCTCCTTTATATGCTTCATCTTCGAGGTTT
ATGCTCTCTTCTGGTCCCTGTCTCTTGCCAAAACCAGTCGTGGTCTGGAC
GGCTCGATTTACCGTTTTATCTGCGAGGGCGGCCCGCGGTTTATCAACGT
CGTCCTGCGGCGAGCTTTCGGAGAGCGGTTTGTGGGGCTCGTGGAGAGAG
TCGGAGATTGGATACTGAACAGGCCCAACCGCTTGCTCCAGGGGTTCTAC
ATGATAATCGTGAACGGCTCCTTTATATGCTTCATCTTCGAGGGATTCCC
CCGTCTTCCGAATGATGTCCACACGTGGCCGTATCACGAGCCGATGGGAT
ACCTGGTGATGGCCTCCTGTATCGGCTCGTTCATCATGGCGTGCACGATT
TCGCCGGGAGTTGTAAGACCAATTGAGGCGGGGGATGAAACAGGGGATGG
CGCACGGAGCGGCGGGCGACACGCAGGGTTGTACCCTTACGATGGAGTCG
TGTTTGTGGAGGGCTTCTGCAAGACCTGCAAGATACTAAAGGATTCCCCC
GTCTTCCGAATGATGTCCACACGTGGCCGTATCACGAGCCGATGGGATAC
CTGGTGATGGCCTCCTGTATCGGCTCGTTCATCATGGCGTGCACGATTTC
GCCGGGAGTTGTAAGACCAATTGAGGCGGGGGATGAAACAGGGGATGGCG
CACGGAGCGGCGGGCGACACGCAGGGTTGTACCCTTACGATGGAGTCGTG
TTTGTGGAGGGCTTCTGCAAGACCTGCAAGATACTAAAACCGGCGCGGTC
GAAGCACTGCCGGGTGTGCAACGTTTGCGTGCCAAGGTTCGACCACCACT
GCGCGTGGCTCAACCAGTGCGTCGGAGAAGAAAACTACCGCAGTTTCCTT
CTCTTTTTGCTGACCGGCGCGGTCGAAGCACTGCCGGGTGTGCAACGTTT
GCGTGCCAAGGTTCGACCACCACTGCGCGTGGCTCAACCAGTGCGTCGGA
GAAGAAAACTACCGCAGTTTCCTTCTCTTTTTGCTGATGCACTGTATTAT
GCTATGGTACGGCACCTTCCTCATCGGCGGTACCCTGTGGTCGATCGTCC
TCAAGAAGAAGCTCCTGACGACCAAGTTCTACAGCAAGAAATCCAGGACT
TACATCAAGAGCAGCTATTCCGTGGTGTTCCAGATGCACTGTATTATGCT
ATGGTACGGCACCTTCCTCATCGGCGGTACCCTGTGGTCGATCGTCCTCA
AGAAGAAGCTCCTGACGACCAAGTTCTACAGCAAGAAATCCAGGACTTAC
ATCAAGAGCAGCTATTCCGTGGTGTTCCAG
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