prot_H-elongata_contig6288.13864.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6288.13864.1
Unique Nameprot_H-elongata_contig6288.13864.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length305
Homology
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: D7FXK3_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK3_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 8.400e-106
Identity = 183/312 (58.65%), Postives = 220/312 (70.51%), Query Frame = 0
Query:    1 GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGEGTASSGPPLSKTRFCVLRYLPPCTKGGGKGKSSGGGIKGGDVCRGTCDWCGGDRERVEKDLIKLSAARAGRGWMG--------HSGRAPPG---------EEERGWDAKSYYRLAGDTDDREDSDADQ 295
            GQSGIV CHKR+TAE L+ +LNRAL+E+      K+FLAMPYHGKM+D +R+E QAKFMSGEVDVI GSVAFGMG+DK DVRFVVHWDLPKS+EGLYQELGRAGRDGS A S+VYHS+E VGLL+FLARKPRP AG    +  EA R+R+ +A+L+A KAV++V AYCE  GCRRKALLAHFGE     G P +       +   P T   G  KSS       D+CRGTCDWCGG+RER++ DL+KL+ ARAG GWMG         +G +  G         +++ GWDAK YYRLAG+ D     D+ Q
Sbjct:  286 GQSGIVYCHKRDTAEELAKALNRALREESLLDGGKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGT--EAGRKRRRRASLKAVKAVDSVVAYCEKQGCRRKALLAHFGE---VPGAPAAAAA-AGQKKRGPATASAGSSKSS---FVPTDICRGTCDWCGGERERIKTDLLKLAGARAGGGWMGVGVRDLGGRAGASGKGXXXXXXXXPQDDSGWDAKRYYRLAGEEDGGSSDDSGQ 588          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A6H5KCP0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP0_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 1.040e-102
Identity = 182/315 (57.78%), Postives = 218/315 (69.21%), Query Frame = 0
Query:    1 GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQA--KFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGEGTASSGPPLSKTRFCVLRYLPPCTKGGGKGKSSGGGIKGGDVCRGTCDWCGGDRERVEKDLIKLSAARAGRGWMG-----------------HSGRAPPGEEERGWDAKSYYRLAGDTDDREDSDADQV 296
            GQSGIV CHKR+TAE L+ +LNRAL+++      K+FLAMPYHGKM+D +R+E QA  KFMSGEVDVITGSVAFGMG+DK DVRFVVHWDLPKS+EGLYQELGRAGRDGS A S+VYHS+E V LL+FLARKPRP AG+   +  E  R+RQ +A+L+A KAV++V AYCE  GCRRKALLAHFGE T +  P  +       R L   T   G G+S+   I   D+CRGTCDWCGG+RER++ DL+KL+ ARAG GWMG                   G      ++ GWDAK YYRLAG  D     D+ Q 
Sbjct:  124 GQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQARAKFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVELLAFLARKPRPLAGEEKGT--ETGRKRQRRASLKAVKAVDSVVAYCEKLGCRRKALLAHFGEVTGA--PAAAXXXXQKKRGL--ATSSAGSGRSN---IVPTDICRGTCDWCGGERERIKTDLLKLAGARAGGGWMGVDVRDLGGSVGASGKGREKGGGGASHDDSGWDAKRYYRLAGQEDGGSSDDSGQA 429          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A4D9D9R2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9R2_9STRA)

HSP 1 Score: 141 bits (356), Expect = 4.540e-34
Identity = 89/213 (41.78%), Postives = 118/213 (55.40%), Query Frame = 0
Query:    1 GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHS-QEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYC-ESPGCRRKALLAHFGEGTASSGPPLSKTRFCVLRYLPPCTKGG 211
            G S IV C KRET E L+    RAL+        +   A+ YHGK+ DA R   QA F+ G V V+  ++AFGMGIDK DVR V HW++P S+E  YQE GRAGRDG PA SL+++S ++A G    L  K     G+      +AV R++EQ        +++V  YC E+  CRR+ LL HFG+ T +      K R C +     C  GG
Sbjct:  257 GGSAIVYCWKRETCEELA----RALE-------GRGLSALAYHGKLPDARRRHVQAMFVEGGVQVVAATLAFGMGIDKADVRVVAHWNIPPSLEAFYQESGRAGRDGGPALSLLFYSPRDAEGRFHML-HKELDGHGEAGREKQQAVERKKEQ--------LDSVLEYCQEAETCRRRVLLRHFGDKTGARPAGWRKERCCDV-----CMDGG 444          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A1L8N0V0_9SPIR (Uncharacterized protein n=1 Tax=Treponema sp. CETP13 TaxID=1908540 RepID=A0A1L8N0V0_9SPIR)

HSP 1 Score: 139 bits (349), Expect = 1.070e-33
Identity = 75/183 (40.98%), Postives = 104/183 (56.83%), Query Frame = 0
Query:    2 QSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGE 184
            +SGI+ C  R+  + LS  L R           K F  +PYH  ++  +R + Q KF+ G+VD+I  +VAFGMGI+K DVRFV+H+DLPKS+E  YQE+GRAGRDG PA +L+ ++      ++F   +      D+                  AK+ +  +  YCES GCRRK LLAHFGE
Sbjct:  237 ESGIIYCFSRKQVDELSAYLKR-----------KHFFVLPYHAGLSSEKREKNQQKFICGKVDIIVATVAFGMGINKSDVRFVLHYDLPKSLEQYYQEIGRAGRDGKPAHALLLYTYADTRKINFFIDEKSGVEYDS------------------AKEQLRGMIEYCESKGCRRKVLLAHFGE 390          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A849PVU4_9EURY (DNA helicase n=4 Tax=Methanococcoides TaxID=2225 RepID=A0A849PVU4_9EURY)

HSP 1 Score: 135 bits (341), Expect = 3.260e-32
Identity = 73/185 (39.46%), Postives = 108/185 (58.38%), Query Frame = 0
Query:    1 GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLA-RKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGE 184
            G SGI+ C+ R++ E++S  LNR           + F  +PYH  +NDA+R + Q +F+  +VD+I  +VAFGMGIDK +VRFV+H+DLPK++EG YQE GR GRDG     ++Y S+     + +L  +KP+ +  D + +                   ++ +  YCES  CRRKALL +FGE
Sbjct:  224 GNSGIIYCNSRKSVESVSTKLNR-----------EGFHTLPYHAGLNDAKRQDHQERFIRDDVDIIVATVAFGMGIDKPNVRFVIHYDLPKNLEGYYQETGRGGRDGLECECILYFSRADWYKIKYLIDQKPKKSERDIAMTK------------------LQEMIDYCESTSCRRKALLRYFGE 379          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A7K3Y5H9_9EURY (RecQ family ATP-dependent DNA helicase (Fragment) n=1 Tax=Methanomicrobiales archaeon TaxID=2184052 RepID=A0A7K3Y5H9_9EURY)

HSP 1 Score: 132 bits (332), Expect = 7.250e-32
Identity = 76/184 (41.30%), Postives = 99/184 (53.80%), Query Frame = 0
Query:    1 GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGE 184
            G +GI+ C  ++  E L+G L             K F A+PYH  + DA R E Q  F  G+V +I  +VAFGMGIDK DVRFV+H DLPK +E  YQE GRAGRDG PA  ++++S+     + +L  K      D    D              A +   A+  YCE+ GCRRK LLA+FGE
Sbjct:  227 GDAGIIYCFSQKATEDLAGKLQ-----------DKGFSALPYHAGLPDAIREEHQEAFSRGDVTIICATVAFGMGIDKPDVRFVIHTDLPKDLESYYQETGRAGRDGDPADCILFYSRGDYSTIRYLIEKE---CADVVRKDV-------------AYRKAGAMLDYCETTGCRRKFLLAYFGE 383          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: Q8THK7_METAC (DNA helicase n=6 Tax=Methanosarcina TaxID=2207 RepID=Q8THK7_METAC)

HSP 1 Score: 134 bits (338), Expect = 1.350e-31
Identity = 76/190 (40.00%), Postives = 109/190 (57.37%), Query Frame = 0
Query:    1 GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQ-EAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGEGTASS 189
            G++GI+ C  R   ETL+  LN A            F A+PYH  ++D+ERS  Q  F+  +VD+I  ++AFGMGIDK +VRFV+H+DLP+++E  YQE GR GRDGSP   +++ S+ +   +  F+A+K      D S      V+ RQ             + AYCE   CRR+ALL +FGE  ++S
Sbjct:  254 GEAGIIYCQSRNNVETLTKKLNLA-----------GFRALPYHAGLSDSERSRNQEMFIKDDVDIIVATIAFGMGIDKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQKTNEKEKDISL-----VQLRQ-------------MVAYCEGNKCRRQALLEYFGEELSAS 414          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A1Y1I869_KLENI (ATP-dependent DNA helicase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I869_KLENI)

HSP 1 Score: 134 bits (337), Expect = 1.600e-31
Identity = 77/189 (40.74%), Postives = 104/189 (55.03%), Query Frame = 0
Query:    1 GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAK-----KAVEAVAAYCESPGCRRKALLAHFGE 184
            GQ  IV C  R + + L+  L            S      PYH  + DAERS T   +++G + V+  ++AFGMGID+ DVR VVH+++PKSIEG YQE GRAGRDG PA S++Y+  E   L+ F+ RK             E  + +Q+Q    A      +A + V  YC+  GCRRK LLA+FGE
Sbjct:  273 GQCAIVYCLSRSSCDGLAARL-----------LSNGIPCKPYHAGLPDAERSRTLKDWVTGRIPVVAATIAFGMGIDRADVRLVVHFNMPKSIEGFYQESGRAGRDGQPAKSVLYYGSEDESLMQFILRK-------------EVAKMQQKQGPKAANTEHAYEAFQEVVKYCQEAGCRRKRLLAYFGE 437          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A2I0NM53_9EURY (DNA helicase n=1 Tax=Methanomicrobiales archaeon HGW-Methanomicrobiales-6 TaxID=2013822 RepID=A0A2I0NM53_9EURY)

HSP 1 Score: 133 bits (335), Expect = 1.670e-31
Identity = 75/181 (41.44%), Postives = 100/181 (55.25%), Query Frame = 0
Query:    4 GIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGE 184
            GI+ C  ++  E L+  L +           K F A+PYH  + DA R+E Q  F  G+  +I  +VAFGMGIDK DVRFV+H DLPK IE  YQE GRAGRDG P   ++++S+   G + +L  K       T A+  +   R+             A+  YCE+PGCRRK LLA+FGE
Sbjct:  230 GIIYCFSQKATEDLAEKLQK-----------KGFPALPYHAGLPDAVRTEHQEAFSRGDAAIICATVAFGMGIDKPDVRFVIHTDLPKDIESYYQETGRAGRDGEPGDCILFYSRGDYGAIRYLIEKE-----STDATQKDIAYRK-----------AGAMLDYCETPGCRRKFLLAYFGE 383          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A7S1BN62_9STRA (ATP-dependent DNA helicase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BN62_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.760e-31
Identity = 71/186 (38.17%), Postives = 107/186 (57.53%), Query Frame = 0
Query:    4 GIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGEGTASS 189
            G+V   +R+    L+  ++RA  +        + +A+PYH  + D  R+ETQ ++ SG V+V+  ++AFGMGID   VR+V+HW+L KS+EG YQE GRAGRDG  A S+VY+    + + SFL +K    + D +  +             R  KA++ ++ YC   GCRR+ LL HFGE   +S
Sbjct:  428 GVVYVFRRQDTSDLAQKISRACDD-------ANIIALPYHAGLKDDLRTETQKRWTSGNVNVVVATIAFGMGIDLPHVRYVIHWNLAKSVEGFYQESGRAGRDGKQARSIVYYDLSDLQMYSFLNKKSFFGSNDQTGEE-------------RNHKALDEMSEYCVLQGCRRQYLLGHFGESIKTS 593          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXK3_ECTSI8.400e-10658.65ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A6H5KCP0_9PHAE1.040e-10257.78ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A4D9D9R2_9STRA4.540e-3441.78Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1L8N0V0_9SPIR1.070e-3340.98Uncharacterized protein n=1 Tax=Treponema sp. CETP... [more]
A0A849PVU4_9EURY3.260e-3239.46DNA helicase n=4 Tax=Methanococcoides TaxID=2225 R... [more]
A0A7K3Y5H9_9EURY7.250e-3241.30RecQ family ATP-dependent DNA helicase (Fragment) ... [more]
Q8THK7_METAC1.350e-3140.00DNA helicase n=6 Tax=Methanosarcina TaxID=2207 Rep... [more]
A0A1Y1I869_KLENI1.600e-3140.74ATP-dependent DNA helicase n=1 Tax=Klebsormidium n... [more]
A0A2I0NM53_9EURY1.670e-3141.44DNA helicase n=1 Tax=Methanomicrobiales archaeon H... [more]
A0A7S1BN62_9STRA2.760e-3138.17ATP-dependent DNA helicase n=1 Tax=Corethron hystr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 15..107
e-value: 1.1E-19
score: 81.4
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 24..106
e-value: 1.1E-13
score: 51.5
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 1..147
score: 16.295
IPR032284ATP-dependent DNA helicase RecQ, zinc-binding domainPFAMPF16124RecQ_Zn_bindcoord: 150..234
e-value: 3.6E-8
score: 34.0
NoneNo IPR availablePANTHERPTHR13710DNA HELICASE RECQ FAMILY MEMBERcoord: 2..263
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..185

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6288contigH-elongata_contig6288:1..2552 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6288.13864.1mRNA_H-elongata_contig6288.13864.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6288 1..2552 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6288.13864.1 ID=prot_H-elongata_contig6288.13864.1|Name=mRNA_H-elongata_contig6288.13864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=305bp
GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAE
RSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQEL
GRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQ
EQAALRAKKAVEAVAAYCESPGCRRKALLAHFGEGTASSGPPLSKTRFCV
LRYLPPCTKGGGKGKSSGGGIKGGDVCRGTCDWCGGDRERVEKDLIKLSA
ARAGRGWMGHSGRAPPGEEERGWDAKSYYRLAGDTDDREDSDADQVEGLR
DVLH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR032284RecQ_Zn-bd
IPR027417P-loop_NTPase