mRNA_H-elongata_contig6288.13864.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6288.13864.1
Unique NamemRNA_H-elongata_contig6288.13864.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: D7FXK3_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK3_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 8.400e-106
Identity = 183/312 (58.65%), Postives = 220/312 (70.51%), Query Frame = 1
Query:    1 GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGEGTASSGPPLSKTRFCVLRYLPPCTKGGGKGKSSGGGIKGGDVCRGTCDWCGGDRERVEKDLIKLSAARAGRGWMG--------HSGRAPPG---------EEERGWDAKSYYRLAGDTDDREDSDADQ 885
            GQSGIV CHKR+TAE L+ +LNRAL+E+      K+FLAMPYHGKM+D +R+E QAKFMSGEVDVI GSVAFGMG+DK DVRFVVHWDLPKS+EGLYQELGRAGRDGS A S+VYHS+E VGLL+FLARKPRP AG    +  EA R+R+ +A+L+A KAV++V AYCE  GCRRKALLAHFGE     G P +       +   P T   G  KSS       D+CRGTCDWCGG+RER++ DL+KL+ ARAG GWMG         +G +  G         +++ GWDAK YYRLAG+ D     D+ Q
Sbjct:  286 GQSGIVYCHKRDTAEELAKALNRALREESLLDGGKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGT--EAGRKRRRRASLKAVKAVDSVVAYCEKQGCRRKALLAHFGE---VPGAPAAAAA-AGQKKRGPATASAGSSKSS---FVPTDICRGTCDWCGGERERIKTDLLKLAGARAGGGWMGVGVRDLGGRAGASGKGXXXXXXXXPQDDSGWDAKRYYRLAGEEDGGSSDDSGQ 588          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A6H5KCP0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP0_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 1.040e-102
Identity = 182/315 (57.78%), Postives = 218/315 (69.21%), Query Frame = 1
Query:    1 GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQA--KFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGEGTASSGPPLSKTRFCVLRYLPPCTKGGGKGKSSGGGIKGGDVCRGTCDWCGGDRERVEKDLIKLSAARAGRGWMG-----------------HSGRAPPGEEERGWDAKSYYRLAGDTDDREDSDADQV 888
            GQSGIV CHKR+TAE L+ +LNRAL+++      K+FLAMPYHGKM+D +R+E QA  KFMSGEVDVITGSVAFGMG+DK DVRFVVHWDLPKS+EGLYQELGRAGRDGS A S+VYHS+E V LL+FLARKPRP AG+   +  E  R+RQ +A+L+A KAV++V AYCE  GCRRKALLAHFGE T +  P  +       R L   T   G G+S+   I   D+CRGTCDWCGG+RER++ DL+KL+ ARAG GWMG                   G      ++ GWDAK YYRLAG  D     D+ Q 
Sbjct:  124 GQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQARAKFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVELLAFLARKPRPLAGEEKGT--ETGRKRQRRASLKAVKAVDSVVAYCEKLGCRRKALLAHFGEVTGA--PAAAXXXXQKKRGL--ATSSAGSGRSN---IVPTDICRGTCDWCGGERERIKTDLLKLAGARAGGGWMGVDVRDLGGSVGASGKGREKGGGGASHDDSGWDAKRYYRLAGQEDGGSSDDSGQA 429          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A4D9D9R2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9R2_9STRA)

HSP 1 Score: 141 bits (356), Expect = 4.540e-34
Identity = 89/213 (41.78%), Postives = 118/213 (55.40%), Query Frame = 1
Query:    1 GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHS-QEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYC-ESPGCRRKALLAHFGEGTASSGPPLSKTRFCVLRYLPPCTKGG 633
            G S IV C KRET E L+    RAL+        +   A+ YHGK+ DA R   QA F+ G V V+  ++AFGMGIDK DVR V HW++P S+E  YQE GRAGRDG PA SL+++S ++A G    L  K     G+      +AV R++EQ        +++V  YC E+  CRR+ LL HFG+ T +      K R C +     C  GG
Sbjct:  257 GGSAIVYCWKRETCEELA----RALE-------GRGLSALAYHGKLPDARRRHVQAMFVEGGVQVVAATLAFGMGIDKADVRVVAHWNIPPSLEAFYQESGRAGRDGGPALSLLFYSPRDAEGRFHML-HKELDGHGEAGREKQQAVERKKEQ--------LDSVLEYCQEAETCRRRVLLRHFGDKTGARPAGWRKERCCDV-----CMDGG 444          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A1L8N0V0_9SPIR (Uncharacterized protein n=1 Tax=Treponema sp. CETP13 TaxID=1908540 RepID=A0A1L8N0V0_9SPIR)

HSP 1 Score: 139 bits (349), Expect = 1.070e-33
Identity = 75/183 (40.98%), Postives = 104/183 (56.83%), Query Frame = 1
Query:    4 QSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGE 552
            +SGI+ C  R+  + LS  L R           K F  +PYH  ++  +R + Q KF+ G+VD+I  +VAFGMGI+K DVRFV+H+DLPKS+E  YQE+GRAGRDG PA +L+ ++      ++F   +      D+                  AK+ +  +  YCES GCRRK LLAHFGE
Sbjct:  237 ESGIIYCFSRKQVDELSAYLKR-----------KHFFVLPYHAGLSSEKREKNQQKFICGKVDIIVATVAFGMGINKSDVRFVLHYDLPKSLEQYYQEIGRAGRDGKPAHALLLYTYADTRKINFFIDEKSGVEYDS------------------AKEQLRGMIEYCESKGCRRKVLLAHFGE 390          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A849PVU4_9EURY (DNA helicase n=4 Tax=Methanococcoides TaxID=2225 RepID=A0A849PVU4_9EURY)

HSP 1 Score: 135 bits (341), Expect = 3.260e-32
Identity = 73/185 (39.46%), Postives = 108/185 (58.38%), Query Frame = 1
Query:    1 GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLA-RKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGE 552
            G SGI+ C+ R++ E++S  LNR           + F  +PYH  +NDA+R + Q +F+  +VD+I  +VAFGMGIDK +VRFV+H+DLPK++EG YQE GR GRDG     ++Y S+     + +L  +KP+ +  D + +                   ++ +  YCES  CRRKALL +FGE
Sbjct:  224 GNSGIIYCNSRKSVESVSTKLNR-----------EGFHTLPYHAGLNDAKRQDHQERFIRDDVDIIVATVAFGMGIDKPNVRFVIHYDLPKNLEGYYQETGRGGRDGLECECILYFSRADWYKIKYLIDQKPKKSERDIAMTK------------------LQEMIDYCESTSCRRKALLRYFGE 379          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A7K3Y5H9_9EURY (RecQ family ATP-dependent DNA helicase (Fragment) n=1 Tax=Methanomicrobiales archaeon TaxID=2184052 RepID=A0A7K3Y5H9_9EURY)

HSP 1 Score: 132 bits (332), Expect = 7.250e-32
Identity = 76/184 (41.30%), Postives = 99/184 (53.80%), Query Frame = 1
Query:    1 GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGE 552
            G +GI+ C  ++  E L+G L             K F A+PYH  + DA R E Q  F  G+V +I  +VAFGMGIDK DVRFV+H DLPK +E  YQE GRAGRDG PA  ++++S+     + +L  K      D    D              A +   A+  YCE+ GCRRK LLA+FGE
Sbjct:  227 GDAGIIYCFSQKATEDLAGKLQ-----------DKGFSALPYHAGLPDAIREEHQEAFSRGDVTIICATVAFGMGIDKPDVRFVIHTDLPKDLESYYQETGRAGRDGDPADCILFYSRGDYSTIRYLIEKE---CADVVRKDV-------------AYRKAGAMLDYCETTGCRRKFLLAYFGE 383          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: Q8THK7_METAC (DNA helicase n=6 Tax=Methanosarcina TaxID=2207 RepID=Q8THK7_METAC)

HSP 1 Score: 134 bits (338), Expect = 1.350e-31
Identity = 76/190 (40.00%), Postives = 109/190 (57.37%), Query Frame = 1
Query:    1 GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQ-EAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGEGTASS 567
            G++GI+ C  R   ETL+  LN A            F A+PYH  ++D+ERS  Q  F+  +VD+I  ++AFGMGIDK +VRFV+H+DLP+++E  YQE GR GRDGSP   +++ S+ +   +  F+A+K      D S      V+ RQ             + AYCE   CRR+ALL +FGE  ++S
Sbjct:  254 GEAGIIYCQSRNNVETLTKKLNLA-----------GFRALPYHAGLSDSERSRNQEMFIKDDVDIIVATIAFGMGIDKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQKTNEKEKDISL-----VQLRQ-------------MVAYCEGNKCRRQALLEYFGEELSAS 414          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A1Y1I869_KLENI (ATP-dependent DNA helicase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I869_KLENI)

HSP 1 Score: 134 bits (337), Expect = 1.600e-31
Identity = 77/189 (40.74%), Postives = 104/189 (55.03%), Query Frame = 1
Query:    1 GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAK-----KAVEAVAAYCESPGCRRKALLAHFGE 552
            GQ  IV C  R + + L+  L            S      PYH  + DAERS T   +++G + V+  ++AFGMGID+ DVR VVH+++PKSIEG YQE GRAGRDG PA S++Y+  E   L+ F+ RK             E  + +Q+Q    A      +A + V  YC+  GCRRK LLA+FGE
Sbjct:  273 GQCAIVYCLSRSSCDGLAARL-----------LSNGIPCKPYHAGLPDAERSRTLKDWVTGRIPVVAATIAFGMGIDRADVRLVVHFNMPKSIEGFYQESGRAGRDGQPAKSVLYYGSEDESLMQFILRK-------------EVAKMQQKQGPKAANTEHAYEAFQEVVKYCQEAGCRRKRLLAYFGE 437          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A2I0NM53_9EURY (DNA helicase n=1 Tax=Methanomicrobiales archaeon HGW-Methanomicrobiales-6 TaxID=2013822 RepID=A0A2I0NM53_9EURY)

HSP 1 Score: 133 bits (335), Expect = 1.670e-31
Identity = 75/181 (41.44%), Postives = 100/181 (55.25%), Query Frame = 1
Query:   10 GIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGE 552
            GI+ C  ++  E L+  L +           K F A+PYH  + DA R+E Q  F  G+  +I  +VAFGMGIDK DVRFV+H DLPK IE  YQE GRAGRDG P   ++++S+   G + +L  K       T A+  +   R+             A+  YCE+PGCRRK LLA+FGE
Sbjct:  230 GIIYCFSQKATEDLAEKLQK-----------KGFPALPYHAGLPDAVRTEHQEAFSRGDAAIICATVAFGMGIDKPDVRFVIHTDLPKDIESYYQETGRAGRDGEPGDCILFYSRGDYGAIRYLIEKE-----STDATQKDIAYRK-----------AGAMLDYCETPGCRRKFLLAYFGE 383          
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Match: A0A7S1BN62_9STRA (ATP-dependent DNA helicase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BN62_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.760e-31
Identity = 71/186 (38.17%), Postives = 107/186 (57.53%), Query Frame = 1
Query:   10 GIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAERSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQELGRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQEQAALRAKKAVEAVAAYCESPGCRRKALLAHFGEGTASS 567
            G+V   +R+    L+  ++RA  +        + +A+PYH  + D  R+ETQ ++ SG V+V+  ++AFGMGID   VR+V+HW+L KS+EG YQE GRAGRDG  A S+VY+    + + SFL +K    + D +  +             R  KA++ ++ YC   GCRR+ LL HFGE   +S
Sbjct:  428 GVVYVFRRQDTSDLAQKISRACDD-------ANIIALPYHAGLKDDLRTETQKRWTSGNVNVVVATIAFGMGIDLPHVRYVIHWNLAKSVEGFYQESGRAGRDGKQARSIVYYDLSDLQMYSFLNKKSFFGSNDQTGEE-------------RNHKALDEMSEYCVLQGCRRQYLLGHFGESIKTS 593          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6288.13864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXK3_ECTSI8.400e-10658.65ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A6H5KCP0_9PHAE1.040e-10257.78ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A4D9D9R2_9STRA4.540e-3441.78Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1L8N0V0_9SPIR1.070e-3340.98Uncharacterized protein n=1 Tax=Treponema sp. CETP... [more]
A0A849PVU4_9EURY3.260e-3239.46DNA helicase n=4 Tax=Methanococcoides TaxID=2225 R... [more]
A0A7K3Y5H9_9EURY7.250e-3241.30RecQ family ATP-dependent DNA helicase (Fragment) ... [more]
Q8THK7_METAC1.350e-3140.00DNA helicase n=6 Tax=Methanosarcina TaxID=2207 Rep... [more]
A0A1Y1I869_KLENI1.600e-3140.74ATP-dependent DNA helicase n=1 Tax=Klebsormidium n... [more]
A0A2I0NM53_9EURY1.670e-3141.44DNA helicase n=1 Tax=Methanomicrobiales archaeon H... [more]
A0A7S1BN62_9STRA2.760e-3138.17ATP-dependent DNA helicase n=1 Tax=Corethron hystr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6288contigH-elongata_contig6288:1..2552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.4
Seed ortholog evalue6.8e-90
Seed eggNOG ortholog2880.D7FXK3
KEGG koko:K10901
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00295,M00414
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-28_002030.1
Exons7
Model size915
Cds size915
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.2343912-CDS-H-elongata_contig6288:0..301622931012.2343912-CDS-H-elongata_contig6288:0..30Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6288 1..30 +
1691679661.8002226-CDS-H-elongata_contig6288:0..301691679661.8002226-CDS-H-elongata_contig6288:0..30Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6288 1..30 +
1622931012.2580009-CDS-H-elongata_contig6288:445..5801622931012.2580009-CDS-H-elongata_contig6288:445..580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6288 446..580 +
1691679661.810988-CDS-H-elongata_contig6288:445..5801691679661.810988-CDS-H-elongata_contig6288:445..580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6288 446..580 +
1622931012.2780235-CDS-H-elongata_contig6288:794..8741622931012.2780235-CDS-H-elongata_contig6288:794..874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6288 795..874 +
1691679661.8202503-CDS-H-elongata_contig6288:794..8741691679661.8202503-CDS-H-elongata_contig6288:794..874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6288 795..874 +
1622931012.2991076-CDS-H-elongata_contig6288:1021..11821622931012.2991076-CDS-H-elongata_contig6288:1021..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6288 1022..1182 +
1691679661.8299716-CDS-H-elongata_contig6288:1021..11821691679661.8299716-CDS-H-elongata_contig6288:1021..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6288 1022..1182 +
1622931012.3218682-CDS-H-elongata_contig6288:1594..17761622931012.3218682-CDS-H-elongata_contig6288:1594..1776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6288 1595..1776 +
1691679661.8402045-CDS-H-elongata_contig6288:1594..17761691679661.8402045-CDS-H-elongata_contig6288:1594..1776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6288 1595..1776 +
1622931012.3411903-CDS-H-elongata_contig6288:1927..20941622931012.3411903-CDS-H-elongata_contig6288:1927..2094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6288 1928..2094 +
1691679661.8518827-CDS-H-elongata_contig6288:1927..20941691679661.8518827-CDS-H-elongata_contig6288:1927..2094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6288 1928..2094 +
1622931012.362312-CDS-H-elongata_contig6288:2392..25521622931012.362312-CDS-H-elongata_contig6288:2392..2552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6288 2393..2552 +
1691679661.877278-CDS-H-elongata_contig6288:2392..25521691679661.877278-CDS-H-elongata_contig6288:2392..2552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6288 2393..2552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6288.13864.1prot_H-elongata_contig6288.13864.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6288 1..2552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6288.13864.1

>prot_H-elongata_contig6288.13864.1 ID=prot_H-elongata_contig6288.13864.1|Name=mRNA_H-elongata_contig6288.13864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=305bp
GQSGIVSCHKRETAETLSGSLNRALQEDEASSCSKSFLAMPYHGKMNDAE
RSETQAKFMSGEVDVITGSVAFGMGIDKRDVRFVVHWDLPKSIEGLYQEL
GRAGRDGSPATSLVYHSQEAVGLLSFLARKPRPAAGDTSASDGEAVRRRQ
EQAALRAKKAVEAVAAYCESPGCRRKALLAHFGEGTASSGPPLSKTRFCV
LRYLPPCTKGGGKGKSSGGGIKGGDVCRGTCDWCGGDRERVEKDLIKLSA
ARAGRGWMGHSGRAPPGEEERGWDAKSYYRLAGDTDDREDSDADQVEGLR
DVLH*
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mRNA from alignment at H-elongata_contig6288:1..2552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6288.13864.1 ID=mRNA_H-elongata_contig6288.13864.1|Name=mRNA_H-elongata_contig6288.13864.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2552bp|location=Sequence derived from alignment at H-elongata_contig6288:1..2552+ (Himanthalia elongata Himel1 dioecious)
GGACAGTCTGGCATCGTTTCCTGCCACAAGGTAAACGGTAATCACGCATA TCGGGTTCAAGGGTTTCCCCCCCTCCAGCCCCCCCCCCCCCGCCTCCCCG TCCGGCGCGGGTATGTATTCCCCGGTCTATATCACCTGGTGGACTGACAA TCTTGACCCGCTGATTTCGGATCCTGTGGTCGGTCATCCGATTCTGGTTA GTGTTGCAGGCCTCGGGATCGGCCAGTAACGAGTCAAGCACGACGAGAAA CACGCACACTCGGGGACCCCTCGAGTGTGGCTAGTTTGTTCTTCCCGAGA ATAATTCAGCGGGAGCGCCTTGAGTACACGTAAACTGAGGCATCCCTCCA TACACACGAGCCCCCGCCTCTCGCTCGCAATGTCCCCACCTTTGTCCACT CGACCTCACGGCGCTCGCTTCCTCAAACTTGCGCTTGGTCTCAAGAGGGA AACGGCGGAGACGTTGTCGGGGTCGCTGAACCGCGCGCTTCAAGAAGACG AAGCCAGCTCCTGCAGCAAGTCTTTTTTGGCGATGCCGTACCACGGGAAG ATGAATGACGCAGAGAGGAGCGAAACTCAGGTAGTAGTTTATATGTGTGT GCATGTGTAAGAGTGTGTTTCGCGAGAAGCTCCAATGCCGTGTACAGAGC CGCAAGCGAATTGCTCGCGCATATTTTTACTAGCGGTTGTAGTTGGCGTG CCGTGCAATAAAACAGTTGCGGTGCAAGCCGTGTCGGCTTCGACAATATT TTCGCCGCGACGCCCGAGAAAGCTCCGCGCCGTTTATTTTTCAGGCGAAG TTCATGTCCGGGGAGGTCGACGTCATCACCGGGAGCGTAGCTTTCGGGAT GGGTATCGACAAGCGTGACGTCAGGTAAACAAACTATGTACCTATGCGGT ACGAATGGAAGTACGCGGCTGTTTTCCCCGTCACCAGCCCCGCTCACGCC GCTGGTTTTGTGACACTACGACAACCAGTCCAGCTGTCTTCGTAAGCTCC ACGCTTCGTCAATCCCCATAGGTTCGTGGTGCACTGGGATCTTCCAAAGA GCATCGAGGGGCTGTACCAGGAGCTAGGACGGGCGGGCCGCGATGGATCC CCAGCGACCAGCTTGGTATACCACAGCCAAGAAGCGGTTGGCCTCCTCTC GTTCCTCGCTAGGAAACCCCGCCCAGCGGCAGGTGCGGACAGAGCCTTCT TGCACCACGCGCCCAATCTCGATCGATCAGTTGAAATGACACGGCTGGGC TATATACGCGCAACTTGGCGAAGTCGGCGCAGCACCTTCTTGCAAGAGCC TACAGAGAAAAATAATCCGCATCGTTGATTCGCGGTGTGAATGATGGATT CGTCTCCTTTTAGACTTGGCCTTGCACGCCCTTTGCTCTGACAGCACACA ACCACCATCCACCTTAAAAATGCCGGGCGGTTGTCATACTTTGTGTTGCT CGGCGGTTAGCGTTGTTCTTCGGCTTGGTCACCGCCATTTGTTTGCCAGC GCTGTCGGCGTGTGAGCGGAAAGCGTGGCAAAGCGCTTAGCCTTCTTTTT ATGAACCCGCGTCTCTTGCCGATTTCCTTTACACTCGCACGCAGGCGACA CGTCCGCGAGTGATGGAGAAGCGGTGCGTCGGCGTCAGGAGCAAGCCGCG CTCAGGGCAAAAAAGGCTGTGGAAGCAGTTGCGGCGTACTGCGAATCCCC AGGCTGTCGAAGAAAGGCGCTGCTGGCACACTTTGGCGAAGGGACGGCAT CATCAGGTCCGCCGCTCTCGAAGACAGTCCTCGAACGGCTGTACCACTCT CGACCCGTCGAACTATTTCATGCCCCACACCTCTTCTCGAGCCTACGATG AGATAAGCCTTACAGTGACTTGAGGTCTAGCACAAGACTTTTTGCCTGGT TTTATTGTTGCGAGTACTGCTCCTAAGCGCTTCTGTGTGCTACGTTATTT GCCTCCGTGTACCAAAGGGGGCGGAAAGGGGAAGAGCAGCGGTGGCGGCA TTAAGGGTGGGGACGTTTGTCGAGGTACTTGCGACTGGTGTGGAGGAGAC CGCGAGAGAGTAGAGAAGGACTTGATCAAGCTCTCGGCGGCGAGGTGAGA TGTACTAAGTTCCGCGCACCGTGTTATTGGCTCGCGATAGCTATGTTCTA ATCGGTCGTGGGCGCTTGGAACAGGCATTCGACCTATTGATAGGGGTGAC TAACCCCGGTAGAGAATATTATGCCTCGTGTTCCGCGCGGCTTGACGATG AACAAGCGCCGTAGAATTAACTTTCACGGAAGAGTCAACGGGGAAACGGG AGCGCAAAGAAATCGCACCCAGTTTTGAAGCAATTATGGTCTTCGTAGTT ACACCGGGTCCCATGACGTCACTCTACCACACTCGTGTACAGGGCCGGTC GCGGCTGGATGGGCCACTCCGGTCGGGCTCCTCCTGGAGAAGAGGAGCGC GGGTGGGATGCGAAGAGCTACTACCGCTTGGCTGGCGACACCGATGACCG TGAGGACAGCGATGCCGATCAGGTAGAAGGGCTGCGTGATGTGTTACACT AA
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Coding sequence (CDS) from alignment at H-elongata_contig6288:1..2552+

>mRNA_H-elongata_contig6288.13864.1 ID=mRNA_H-elongata_contig6288.13864.1|Name=mRNA_H-elongata_contig6288.13864.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1830bp|location=Sequence derived from alignment at H-elongata_contig6288:1..2552+ (Himanthalia elongata Himel1 dioecious)
GGACAGTCTGGCATCGTTTCCTGCCACAAGGGACAGTCTGGCATCGTTTC
CTGCCACAAGAGGGAAACGGCGGAGACGTTGTCGGGGTCGCTGAACCGCG
CGCTTCAAGAAGACGAAGCCAGCTCCTGCAGCAAGTCTTTTTTGGCGATG
CCGTACCACGGGAAGATGAATGACGCAGAGAGGAGCGAAACTCAGAGGGA
AACGGCGGAGACGTTGTCGGGGTCGCTGAACCGCGCGCTTCAAGAAGACG
AAGCCAGCTCCTGCAGCAAGTCTTTTTTGGCGATGCCGTACCACGGGAAG
ATGAATGACGCAGAGAGGAGCGAAACTCAGGCGAAGTTCATGTCCGGGGA
GGTCGACGTCATCACCGGGAGCGTAGCTTTCGGGATGGGTATCGACAAGC
GTGACGTCAGGCGAAGTTCATGTCCGGGGAGGTCGACGTCATCACCGGGA
GCGTAGCTTTCGGGATGGGTATCGACAAGCGTGACGTCAGGTTCGTGGTG
CACTGGGATCTTCCAAAGAGCATCGAGGGGCTGTACCAGGAGCTAGGACG
GGCGGGCCGCGATGGATCCCCAGCGACCAGCTTGGTATACCACAGCCAAG
AAGCGGTTGGCCTCCTCTCGTTCCTCGCTAGGAAACCCCGCCCAGCGGCA
GGTTCGTGGTGCACTGGGATCTTCCAAAGAGCATCGAGGGGCTGTACCAG
GAGCTAGGACGGGCGGGCCGCGATGGATCCCCAGCGACCAGCTTGGTATA
CCACAGCCAAGAAGCGGTTGGCCTCCTCTCGTTCCTCGCTAGGAAACCCC
GCCCAGCGGCAGGCGACACGTCCGCGAGTGATGGAGAAGCGGTGCGTCGG
CGTCAGGAGCAAGCCGCGCTCAGGGCAAAAAAGGCTGTGGAAGCAGTTGC
GGCGTACTGCGAATCCCCAGGCTGTCGAAGAAAGGCGCTGCTGGCACACT
TTGGCGAAGGGACGGCATCATCAGGTCCGCCGCTCTCGAAGACAGCGACA
CGTCCGCGAGTGATGGAGAAGCGGTGCGTCGGCGTCAGGAGCAAGCCGCG
CTCAGGGCAAAAAAGGCTGTGGAAGCAGTTGCGGCGTACTGCGAATCCCC
AGGCTGTCGAAGAAAGGCGCTGCTGGCACACTTTGGCGAAGGGACGGCAT
CATCAGGTCCGCCGCTCTCGAAGACACGCTTCTGTGTGCTACGTTATTTG
CCTCCGTGTACCAAAGGGGGCGGAAAGGGGAAGAGCAGCGGTGGCGGCAT
TAAGGGTGGGGACGTTTGTCGAGGTACTTGCGACTGGTGTGGAGGAGACC
GCGAGAGAGTAGAGAAGGACTTGATCAAGCTCTCGGCGGCGAGCGCTTCT
GTGTGCTACGTTATTTGCCTCCGTGTACCAAAGGGGGCGGAAAGGGGAAG
AGCAGCGGTGGCGGCATTAAGGGTGGGGACGTTTGTCGAGGTACTTGCGA
CTGGTGTGGAGGAGACCGCGAGAGAGTAGAGAAGGACTTGATCAAGCTCT
CGGCGGCGAGGGCCGGTCGCGGCTGGATGGGCCACTCCGGTCGGGCTCCT
CCTGGAGAAGAGGAGCGCGGGTGGGATGCGAAGAGCTACTACCGCTTGGC
TGGCGACACCGATGACCGTGAGGACAGCGATGCCGATCAGGTAGAAGGGC
TGCGTGATGTGTTACACTAAGGCCGGTCGCGGCTGGATGGGCCACTCCGG
TCGGGCTCCTCCTGGAGAAGAGGAGCGCGGGTGGGATGCGAAGAGCTACT
ACCGCTTGGCTGGCGACACCGATGACCGTGAGGACAGCGATGCCGATCAG
GTAGAAGGGCTGCGTGATGTGTTACACTAA
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