mRNA_H-elongata_contig62796.13857.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62796.13857.1
Unique NamemRNA_H-elongata_contig62796.13857.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A6H5JWN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN8_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 6.880e-38
Identity = 70/82 (85.37%), Postives = 77/82 (93.90%), Query Frame = 1
Query:   13 AGAFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
            AGAFG+GT V+KGK S+LEFF GYIVEQSLS+DNLFIFIMLFDYFKVP EFQSRVL WGIIGA+SMRA+MIV+GVAAIQRFR
Sbjct:  149 AGAFGMGTWVVKGKTSALEFFAGYIVEQSLSVDNLFIFIMLFDYFKVPAEFQSRVLNWGIIGAVSMRAIMIVVGVAAIQRFR 230          
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A835ZA94_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA94_9STRA)

HSP 1 Score: 134 bits (336), Expect = 6.150e-37
Identity = 65/82 (79.27%), Postives = 75/82 (91.46%), Query Frame = 1
Query:   13 AGAFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
            A AFGLGTM +KG++S LEFF GY+VEQSLS+DNLF+FIMLF+YFKVP  +Q RVLTWGIIGA+SMRAVMIV+GVAAIQRFR
Sbjct:    5 AVAFGLGTMAVKGRQSGLEFFAGYLVEQSLSVDNLFVFIMLFEYFKVPAAYQGRVLTWGIIGAVSMRAVMIVVGVAAIQRFR 86          
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A7S3XZU5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZU5_HETAK)

HSP 1 Score: 134 bits (337), Expect = 5.400e-36
Identity = 65/80 (81.25%), Postives = 74/80 (92.50%), Query Frame = 1
Query:   19 AFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
            AFG GT  +KG+++SLEFF GY+VEQSLS+DNLF+FIMLFDYFKVP +FQSRVLTWGIIGAMSMR VMIVLGVAAIQ+FR
Sbjct:  113 AFGAGTWAVKGRQASLEFFAGYLVEQSLSVDNLFVFIMLFDYFKVPMQFQSRVLTWGIIGAMSMRLVMIVLGVAAIQKFR 192          
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A7S1UHU3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHU3_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.110e-35
Identity = 68/86 (79.07%), Postives = 75/86 (87.21%), Query Frame = 1
Query:    7 TVAGA--FGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
            TVA A  FGLGT   KGK S+LEF+TGYIVEQSLS+DNLF+FI+LFDYFKVP  FQSRVL WGIIGA++MR VMIVLGVAAIQRFR
Sbjct:   41 TVASAMLFGLGTWHFKGKTSALEFYTGYIVEQSLSVDNLFVFILLFDYFKVPAAFQSRVLNWGIIGAIAMRGVMIVLGVAAIQRFR 126          
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A7S2Y1S8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1S8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 5.600e-33
Identity = 59/82 (71.95%), Postives = 72/82 (87.80%), Query Frame = 1
Query:   13 AGAFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
            A  FG GT V+KG+K+ +EF+ GY+VEQSLS+DNLF+F+MLFDYFKVP  +Q+R LTWGIIGAMSMR VMI+LGVAAIQ+FR
Sbjct:   97 AAVFGAGTWVVKGQKAGMEFYAGYLVEQSLSVDNLFVFLMLFDYFKVPLAYQNRCLTWGIIGAMSMRLVMILLGVAAIQKFR 178          
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A7S2E636_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E636_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.010e-30
Identity = 57/82 (69.51%), Postives = 69/82 (84.15%), Query Frame = 1
Query:   13 AGAFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
            A AFG G  V+KG++S  EFF GY+VEQSLS+DNLF+F+M+F+YF+VP E Q RVLTWGIIGA+ MR VMI +GVAAIQRFR
Sbjct:   29 AAAFGSGIWVVKGRRSGFEFFAGYLVEQSLSVDNLFVFLMVFNYFQVPLECQGRVLTWGIIGAVLMRGVMITIGVAAIQRFR 110          
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: D7G851_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G851_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.090e-28
Identity = 53/79 (67.09%), Postives = 67/79 (84.81%), Query Frame = 1
Query:   22 FGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
            FGL TM+ +G++S LEFF GY+VEQSLS+DNLF+F+M FDYF+VP E Q RVLTWGI+GA+ MR VMI  GVAA++RF+
Sbjct:  129 FGLATMLFRGRQSGLEFFAGYLVEQSLSVDNLFVFLMTFDYFQVPLEHQGRVLTWGIVGAILMRGVMIAFGVAAVKRFQ 207          
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: W7THX1_9STRA (Integral membrane protein TerC n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7THX1_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.860e-28
Identity = 51/82 (62.20%), Postives = 71/82 (86.59%), Query Frame = 1
Query:   13 AGAFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
            A AFG G   ++G++ ++EFF GY++E+SLS+DN+F+FIMLF+YFKVP E+QSR L+WGI+GA++MR +MI +GVAAIQRFR
Sbjct:  119 AFAFGFGLWFMEGRQPAMEFFAGYLIEESLSVDNIFVFIMLFEYFKVPIEYQSRALSWGIMGAVAMRGIMIFVGVAAIQRFR 200          
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A7S2SRH4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRH4_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.310e-28
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 1
Query:   19 AFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
            AFG G   +KG+ S+LEFF GY+VEQSLS+DN+F+F++LFDYFKVP   Q + L WGIIGA+ MRA+MIV GVAAI+ FR
Sbjct:   34 AFGCGVWAVKGRTSALEFFAGYLVEQSLSVDNIFVFVLLFDYFKVPLALQPKALQWGIIGAVVMRAIMIVFGVAAIKHFR 113          
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A7S3ZKM7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKM7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.800e-28
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   13 AGAFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
            A  FGL     +G  ++LEF +GY+VEQSLS+DNLF+FIMLFDYF+VP EFQ RVL WGI+GA++MR VMI+ GVAA+Q+FR
Sbjct:   19 AACFGLILNYARGSTAALEFASGYLVEQSLSVDNLFVFIMLFDYFRVPREFQGRVLNWGILGAVAMRGVMIIAGVAAVQKFR 100          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWN8_9PHAE6.880e-3885.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZA94_9STRA6.150e-3779.27Integral membrane protein TerC family-domain-conta... [more]
A0A7S3XZU5_HETAK5.400e-3681.25Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S1UHU3_9STRA3.110e-3579.07Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2Y1S8_9STRA5.600e-3371.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2E636_9STRA1.010e-3069.51Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7G851_ECTSI1.090e-2867.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7THX1_9STRA1.860e-2862.20Integral membrane protein TerC n=3 Tax=Monodopsida... [more]
A0A7S2SRH4_9STRA2.310e-2865.00Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S3ZKM7_9STRA2.800e-2864.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62796contigH-elongata_contig62796:96..842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.2e-23
Seed eggNOG ortholog2880.D7G851
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007275,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009791,GO:0009987,GO:0010027,GO:0016020,GO:0016043,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0055035,GO:0061024,GO:0071840,GO:0090351
EggNOG free text desc.membrane protein TERC
EggNOG OGs2QQNF@2759,COG0861@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931011.4048467-CDS-H-elongata_contig62796:95..1881622931011.4048467-CDS-H-elongata_contig62796:95..188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62796 96..188 -
1691679661.5222456-CDS-H-elongata_contig62796:95..1881691679661.5222456-CDS-H-elongata_contig62796:95..188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62796 96..188 -
1622931011.4782064-CDS-H-elongata_contig62796:674..8421622931011.4782064-CDS-H-elongata_contig62796:674..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62796 675..842 -
1691679661.533569-CDS-H-elongata_contig62796:674..8421691679661.533569-CDS-H-elongata_contig62796:674..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62796 675..842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62796.13857.1prot_H-elongata_contig62796.13857.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62796 96..842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62796.13857.1

>prot_H-elongata_contig62796.13857.1 ID=prot_H-elongata_contig62796.13857.1|Name=mRNA_H-elongata_contig62796.13857.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
WRTVAGAFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFK
VPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR*
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mRNA from alignment at H-elongata_contig62796:96..842-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62796.13857.1 ID=mRNA_H-elongata_contig62796.13857.1|Name=mRNA_H-elongata_contig62796.13857.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at H-elongata_contig62796:96..842- (Himanthalia elongata Himel1 dioecious)
TGGCGCACGGTAGCGGGCGCGTTCGGGCTGGGCACGATGGTGATCAAGGG GAAGAAGTCATCGCTGGAATTCTTCACGGGTTATATTGTGGAGCAGTCAC TCTCTATCGACAACCTCTTCATCTTCATCATGCTGTTCGATTATTTCAAG GTCCCCGAGGAGTTCCAGGTATTGCAGTGGATGCATTGGCAAATATAGTA GGGTACTGCAGTATAGGTATGTATACATGCATTTCTACATTGAGGGAGAT CGAGCAAGACGCAAGTCCTGTGCTGACCCTTCCGAGCTACACTTAGAAAA GGCTTATATACTCGGTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA GTAGTTATTGTAGCAGTAGTGGTGTTAGTTGTAATATTAATAGGAACAGT GATGGTGCATACGGGGTGGGGTAGTTCTTCGCACAGTATGTGTGCAATCC TTTCCCTCTGCCAAATCGTCTCTTCCTTTCTGTGTTCAAGTTATTGCACC AAACATGAGCTCTGGCTGCTTCGACAAGACTACAGAGAAGCTTAGGGAAG GGGGGGGGGTGTCATGGGTTGTTTCTCTTGAGAGAGCGTGTCTTTCTTTG ACTCATCCGCACTTCCCTTCCCCTCTCGACGCCACGCATCAACGTGGCGG ACAGTCGCGGGTGCTGACGTGGGGGATCATTGGAGCCATGTCGATGCGTG CCGTCATGATCGTGTTGGGCGTAGCGGCTATCCAGCGCTTCCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig62796:96..842-

>mRNA_H-elongata_contig62796.13857.1 ID=mRNA_H-elongata_contig62796.13857.1|Name=mRNA_H-elongata_contig62796.13857.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig62796:96..842- (Himanthalia elongata Himel1 dioecious)
TGGCGCACGGTAGCGGGCGCGTTCGGGCTGGGCACGATGGTGATCAAGGG
GAAGAAGTCATCGCTGGAATTCTTCACGGGTTATATTGTGGAGCAGTCAC
TCTCTATCGACAACCTCTTCATCTTCATCATGCTGTTCGATTATTTCAAG
GTCCCCGAGGAGTTCCAGTGGCGCACGGTAGCGGGCGCGTTCGGGCTGGG
CACGATGGTGATCAAGGGGAAGAAGTCATCGCTGGAATTCTTCACGGGTT
ATATTGTGGAGCAGTCACTCTCTATCGACAACCTCTTCATCTTCATCATG
CTGTTCGATTATTTCAAGGTCCCCGAGGAGTTCCAGTCGCGGGTGCTGAC
GTGGGGGATCATTGGAGCCATGTCGATGCGTGCCGTCATGATCGTGTTGG
GCGTAGCGGCTATCCAGCGCTTCCGGTGATCGCGGGTGCTGACGTGGGGG
ATCATTGGAGCCATGTCGATGCGTGCCGTCATGATCGTGTTGGGCGTAGC
GGCTATCCAGCGCTTCCGGTGA
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