mRNA_H-elongata_contig62796.13857.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A6H5JWN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN8_9PHAE) HSP 1 Score: 142 bits (357), Expect = 6.880e-38 Identity = 70/82 (85.37%), Postives = 77/82 (93.90%), Query Frame = 1
Query: 13 AGAFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
AGAFG+GT V+KGK S+LEFF GYIVEQSLS+DNLFIFIMLFDYFKVP EFQSRVL WGIIGA+SMRA+MIV+GVAAIQRFR
Sbjct: 149 AGAFGMGTWVVKGKTSALEFFAGYIVEQSLSVDNLFIFIMLFDYFKVPAEFQSRVLNWGIIGAVSMRAIMIVVGVAAIQRFR 230
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A835ZA94_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA94_9STRA) HSP 1 Score: 134 bits (336), Expect = 6.150e-37 Identity = 65/82 (79.27%), Postives = 75/82 (91.46%), Query Frame = 1
Query: 13 AGAFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
A AFGLGTM +KG++S LEFF GY+VEQSLS+DNLF+FIMLF+YFKVP +Q RVLTWGIIGA+SMRAVMIV+GVAAIQRFR
Sbjct: 5 AVAFGLGTMAVKGRQSGLEFFAGYLVEQSLSVDNLFVFIMLFEYFKVPAAYQGRVLTWGIIGAVSMRAVMIVVGVAAIQRFR 86
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A7S3XZU5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZU5_HETAK) HSP 1 Score: 134 bits (337), Expect = 5.400e-36 Identity = 65/80 (81.25%), Postives = 74/80 (92.50%), Query Frame = 1
Query: 19 AFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
AFG GT +KG+++SLEFF GY+VEQSLS+DNLF+FIMLFDYFKVP +FQSRVLTWGIIGAMSMR VMIVLGVAAIQ+FR
Sbjct: 113 AFGAGTWAVKGRQASLEFFAGYLVEQSLSVDNLFVFIMLFDYFKVPMQFQSRVLTWGIIGAMSMRLVMIVLGVAAIQKFR 192
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A7S1UHU3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHU3_9STRA) HSP 1 Score: 130 bits (328), Expect = 3.110e-35 Identity = 68/86 (79.07%), Postives = 75/86 (87.21%), Query Frame = 1
Query: 7 TVAGA--FGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
TVA A FGLGT KGK S+LEF+TGYIVEQSLS+DNLF+FI+LFDYFKVP FQSRVL WGIIGA++MR VMIVLGVAAIQRFR
Sbjct: 41 TVASAMLFGLGTWHFKGKTSALEFYTGYIVEQSLSVDNLFVFILLFDYFKVPAAFQSRVLNWGIIGAIAMRGVMIVLGVAAIQRFR 126
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A7S2Y1S8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1S8_9STRA) HSP 1 Score: 125 bits (315), Expect = 5.600e-33 Identity = 59/82 (71.95%), Postives = 72/82 (87.80%), Query Frame = 1
Query: 13 AGAFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
A FG GT V+KG+K+ +EF+ GY+VEQSLS+DNLF+F+MLFDYFKVP +Q+R LTWGIIGAMSMR VMI+LGVAAIQ+FR
Sbjct: 97 AAVFGAGTWVVKGQKAGMEFYAGYLVEQSLSVDNLFVFLMLFDYFKVPLAYQNRCLTWGIIGAMSMRLVMILLGVAAIQKFR 178
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A7S2E636_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E636_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.010e-30 Identity = 57/82 (69.51%), Postives = 69/82 (84.15%), Query Frame = 1
Query: 13 AGAFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
A AFG G V+KG++S EFF GY+VEQSLS+DNLF+F+M+F+YF+VP E Q RVLTWGIIGA+ MR VMI +GVAAIQRFR
Sbjct: 29 AAAFGSGIWVVKGRRSGFEFFAGYLVEQSLSVDNLFVFLMVFNYFQVPLECQGRVLTWGIIGAVLMRGVMITIGVAAIQRFR 110
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: D7G851_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G851_ECTSI) HSP 1 Score: 115 bits (288), Expect = 1.090e-28 Identity = 53/79 (67.09%), Postives = 67/79 (84.81%), Query Frame = 1
Query: 22 FGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
FGL TM+ +G++S LEFF GY+VEQSLS+DNLF+F+M FDYF+VP E Q RVLTWGI+GA+ MR VMI GVAA++RF+
Sbjct: 129 FGLATMLFRGRQSGLEFFAGYLVEQSLSVDNLFVFLMTFDYFQVPLEHQGRVLTWGIVGAILMRGVMIAFGVAAVKRFQ 207
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: W7THX1_9STRA (Integral membrane protein TerC n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7THX1_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.860e-28 Identity = 51/82 (62.20%), Postives = 71/82 (86.59%), Query Frame = 1
Query: 13 AGAFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
A AFG G ++G++ ++EFF GY++E+SLS+DN+F+FIMLF+YFKVP E+QSR L+WGI+GA++MR +MI +GVAAIQRFR
Sbjct: 119 AFAFGFGLWFMEGRQPAMEFFAGYLIEESLSVDNIFVFIMLFEYFKVPIEYQSRALSWGIMGAVAMRGIMIFVGVAAIQRFR 200
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A7S2SRH4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRH4_9STRA) HSP 1 Score: 112 bits (280), Expect = 2.310e-28 Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 1
Query: 19 AFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
AFG G +KG+ S+LEFF GY+VEQSLS+DN+F+F++LFDYFKVP Q + L WGIIGA+ MRA+MIV GVAAI+ FR
Sbjct: 34 AFGCGVWAVKGRTSALEFFAGYLVEQSLSVDNIFVFVLLFDYFKVPLALQPKALQWGIIGAVVMRAIMIVFGVAAIKHFR 113
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Match: A0A7S3ZKM7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKM7_9STRA) HSP 1 Score: 112 bits (281), Expect = 2.800e-28 Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 1
Query: 13 AGAFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKVPEEFQSRVLTWGIIGAMSMRAVMIVLGVAAIQRFR 258
A FGL +G ++LEF +GY+VEQSLS+DNLF+FIMLFDYF+VP EFQ RVL WGI+GA++MR VMI+ GVAA+Q+FR
Sbjct: 19 AACFGLILNYARGSTAALEFASGYLVEQSLSVDNLFVFIMLFDYFRVPREFQGRVLNWGILGAVAMRGVMIIAGVAAVQKFR 100 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62796.13857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig62796.13857.1 >prot_H-elongata_contig62796.13857.1 ID=prot_H-elongata_contig62796.13857.1|Name=mRNA_H-elongata_contig62796.13857.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp WRTVAGAFGLGTMVIKGKKSSLEFFTGYIVEQSLSIDNLFIFIMLFDYFKback to top mRNA from alignment at H-elongata_contig62796:96..842- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig62796.13857.1 ID=mRNA_H-elongata_contig62796.13857.1|Name=mRNA_H-elongata_contig62796.13857.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at H-elongata_contig62796:96..842- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig62796:96..842- >mRNA_H-elongata_contig62796.13857.1 ID=mRNA_H-elongata_contig62796.13857.1|Name=mRNA_H-elongata_contig62796.13857.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig62796:96..842- (Himanthalia elongata Himel1 dioecious)back to top |