prot_H-elongata_contig62709.13849.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig62709.13849.1
Unique Nameprot_H-elongata_contig62709.13849.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length110
Homology
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BLAST of mRNA_H-elongata_contig62709.13849.1 vs. uniprot
Match: A0A6P7ISU6_9TELE (piggyBac transposable element-derived protein 4-like n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7ISU6_9TELE)

HSP 1 Score: 52.4 bits (124), Expect = 1.560e-5
Identity = 35/106 (33.02%), Postives = 52/106 (49.06%), Query Frame = 0 
Query:    6 DNFFTSPILFMCLAKMGVFAVGRLRSTLRGASDAKAWFVEHCPELNSKGVLR--ERGQLLFMRFRDIAFTLWKDSKEVFFLSTIHILKTLRSLQVQVRYQKVELCW 109
            DNF+TSP LF+ LAKM   A G  R  ++G           CP      + R  ERG + ++R   + F  W DS+EV   STIH    +    ++ + ++ + CW
Sbjct:  347 DNFYTSPQLFLDLAKMKFGACGTYRDNVKG-----------CPTGRENALTRKSERGTVRWIREDPLLFVKWMDSQEVSICSTIH--PAVSGEVIKRKVKEKDGCW 439
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BLAST of mRNA_H-elongata_contig62709.13849.1 vs. uniprot
Match: A0A671UTR0_SPAAU (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671UTR0_SPAAU)

HSP 1 Score: 51.6 bits (122), Expect = 2.900e-5
Identity = 32/83 (38.55%), Postives = 43/83 (51.81%), Query Frame = 0 
Query:    6 DNFFTSPILFMCLAKMGVFAVGRLRSTLRGASDAKAWFVEHCPELNSKGVLRERGQLLFMRFRDIAFTLWKDSKEVFFLSTIH 88
            DNF++SP LFM LAKM   A G  R + RG    +A         N+     ERG + ++R   + F  W D++EV   STIH
Sbjct:  351 DNFYSSPKLFMDLAKMKFGACGTYRESRRGCPRGRA---------NALTKKSERGSVRWIREGPLVFVKWMDTREVSVCSTIH 424
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62709.13849.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6P7ISU6_9TELE1.560e-533.02piggyBac transposable element-derived protein 4-li... [more]
A0A671UTR0_SPAAU2.900e-538.55DDE_Tnp_1_7 domain-containing protein n=1 Tax=Spar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029526PiggyBac transposable element-derived proteinPFAMPF13843DDE_Tnp_1_7coord: 3..91
e-value: 3.3E-6
score: 26.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..109
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62709contigH-elongata_contig62709:409..1172 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62709.13849.1mRNA_H-elongata_contig62709.13849.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig62709 274..1178 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig62709.13849.1 ID=prot_H-elongata_contig62709.13849.1|Name=mRNA_H-elongata_contig62709.13849.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MMLACDNFFTSPILFMCLAKMGVFAVGRLRSTLRGASDAKAWFVEHCPEL
NSKGVLRERGQLLFMRFRDIAFTLWKDSKEVFFLSTIHILKTLRSLQVQV
RYQKVELCW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029526PGBD