mRNA_H-elongata_contig62709.13849.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62709.13849.1
Unique NamemRNA_H-elongata_contig62709.13849.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62709.13849.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.380e-20
Identity = 64/184 (34.78%), Postives = 91/184 (49.46%), Query Frame = 1
Query:    1 SGMMLACDNFFTSPILFMCLAKMGVFAVGRLRSTLRGASDAKAWFVEHCPELNSKG-VLRERGQLLFMRFRDIAFTLWKDSKEVFFLSTIHILK-------------------TLRS-------LQVQVRYQKVELCW*KWYTRYMGGVDLSDQYNAIHAFMHRAVNYFWRRVFEQKLAQSVTN 471
            SG+ +A DN+FTSP LF CLA   +FAVG  R+     +DA          L S G  +  RG + F R   +A   W DSK++F +STIH+ +                   +LR+       L +Q  Y +++      Y   M GVDL+DQ N  H   H++   FWRRV++ KL Q++TN
Sbjct:  488 SGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTAGADAY---------LESLGRTIPNRGDMNFCRSGQVACVQWADSKDIFLISTIHVAQPAKGKEEAGGIDHFKPLPLSLRAKGRNGEPLDLQQPYMRMD------YVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTN 656          
BLAST of mRNA_H-elongata_contig62709.13849.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.290e-19
Identity = 64/166 (38.55%), Postives = 85/166 (51.20%), Query Frame = 1
Query:    4 GMMLACDNFFTSPILFMCLAKMGVFAVGRLRSTLRGASDAK-AWFVEHCPELNSKGVLRERGQLLFMRFRDIAFTLWKDSKEVFFLSTIHILKT-LRSLQVQVRY-----QKV---ELCW*KWYTRYMGGVDLSDQYNAIHAFMHRAVNYFWRRVFEQKLAQSVTN 471
            G+ +A DNFFT   L  CLA   +FAVG LR    G   A   W  E            ERGQ+L  R  ++    W DS+EV+ +ST H+       L  + R      +KV   +    K Y + MGGVD++DQ    HA  HR + +FWRRVF+QK AQ+V+N
Sbjct:  152 GITVAMDNFFTGAPLLRCLATRDIFAVGTLRGNRIGVELANYLWAKEGM-------AATERGQMLTARSDELVIVKWIDSQEVYLMSTKHVFADEWEPLAYEKRAANNNGEKVSSRQPLARKEYVKNMGGVDVADQRLGSHAHKHRPMTFFWRRVFDQKFAQAVSN 310          
BLAST of mRNA_H-elongata_contig62709.13849.1 vs. uniprot
Match: A0A6H5KMF5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF5_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 4.890e-19
Identity = 62/175 (35.43%), Postives = 84/175 (48.00%), Query Frame = 1
Query:    1 SGMMLACDNFFTSPILFMCLAKMGVFAVGRLRSTLRGASDAKAWFVEHCPELNS-KGVLRERGQLLFMRFRDIAFTLWKDSKEVFFLSTIHILKTLRSLQVQVRYQKVELCW*K--W---------------YTRYMGGVDLSDQYNAIHAFMHRAVNYFWRRVFEQKLAQSVTN 471
            SG+ +A DN+FTSP LF CLA   +FAVG  RS     +          P + S +      G + F R  ++AF  W+DSKE+   ST+HI +T         ++ V L      W               Y +YMGGVD +DQ N  H   HR+    WRRVF+ K+ Q +TN
Sbjct:  196 SGVFIAMDNYFTSPTLFACLASHEIFAVGTCRSPRTCGA---------LPYIQSLERTTPNPGDMTFCRSGEMAFVQWRDSKEILLCSTVHIGETGEEGGDINHFKPVPLALKGKGWAGKHKEHDQPVMRMDYVKYMGGVDRADQQNESHYHDHRSYTNHWRRVFDAKIMQMLTN 361          
BLAST of mRNA_H-elongata_contig62709.13849.1 vs. uniprot
Match: A0A3B4TFC7_SERDU (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Seriola TaxID=8160 RepID=A0A3B4TFC7_SERDU)

HSP 1 Score: 69.3 bits (168), Expect = 8.320e-11
Identity = 55/170 (32.35%), Postives = 83/170 (48.82%), Query Frame = 1
Query:    1 SGMMLACDNFFTSPILFMCLAKMGVFAVGRLRSTLRGASDAKAWFVEHCPELNSKGVLRERGQLLFMRFRDIAFTLWKDSKEVFFLSTIHILKTLRSLQVQVRYQKVELCW*KW-------------YTRYMGGVDLSDQYNAIHAFMHRAVNYFWRRVFEQKLAQSVTN 471
            SG  L CDN++TSP LFM L  + V A G  R   R +   K          +S+G +R      +MR   + F  W DSK+V   STIH   T+ S ++  R+ K +    +W             Y +YMGGVDLSDQ    ++  H+ ++++ R +F+  +  + TN
Sbjct:  379 SGYHLYCDNYYTSPKLFMELCSLKVCACGTYRDNRRESRTKKK---------DSRGTIR------WMRNGPLLFVKWMDSKQVSICSTIH---TVYSGEIAKRHVKGKDG--QWKIQNIPMPTPVAEYNKYMGGVDLSDQLIQYYSVHHKTMSWY-RLLFQHFIDIAATN 527          
BLAST of mRNA_H-elongata_contig62709.13849.1 vs. uniprot
Match: A0A6P7ISU6_9TELE (piggyBac transposable element-derived protein 4-like n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7ISU6_9TELE)

HSP 1 Score: 66.2 bits (160), Expect = 9.620e-10
Identity = 51/162 (31.48%), Postives = 76/162 (46.91%), Query Frame = 1
Query:   22 DNFFTSPILFMCLAKMGVFAVGRLRSTLRGASDAKAWFVEHCPELNSKGVLR--ERGQLLFMRFRDIAFTLWKDSKEVFFLSTIHILKTLRSLQVQVRYQKVELCW*KW----------YTRYMGGVDLSDQYNAIHAFMHRAVNYFWRRVFEQKLAQSVTN 471
            DNF+TSP LF+ LAKM   A G  R  ++G           CP      + R  ERG + ++R   + F  W DS+EV   STIH    +    ++ + ++ + CW             Y + MGGVDLSDQ    ++  HR    ++R +F   +  + TN
Sbjct:  347 DNFYTSPQLFLDLAKMKFGACGTYRDNVKG-----------CPTGRENALTRKSERGTVRWIREDPLLFVKWMDSQEVSICSTIH--PAVSGEVIKRKVKEKDGCWAVKDILCPTPIIAYNKNMGGVDLSDQLIQYYS-THRQTTRWYRTLFFHFVDIATTN 494          
BLAST of mRNA_H-elongata_contig62709.13849.1 vs. uniprot
Match: A0A3Q0QQV4_AMPCI (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Heroini TaxID=318529 RepID=A0A3Q0QQV4_AMPCI)

HSP 1 Score: 65.9 bits (159), Expect = 1.290e-9
Identity = 43/152 (28.29%), Postives = 76/152 (50.00%), Query Frame = 1
Query:    1 SGMMLACDNFFTSPILFMCLAKMGVFAVGRLRSTLRGASDAKAWFVEHCPELNSKGVLRERGQLLFMRFRDIAFTLWKDSKEVFFLSTIHILKTLRSLQVQVRYQKVELCW*----------KWYTRYMGGVDLSDQYNAIHAFMHRAVNYF 426
            +G  L  DNF+TSP LF  L +  + A G +R  + G    K        ++N+   +  RG + ++R   + F  W+D+++VFF STIH      +++ +++ ++    W           K Y ++MGGVDLSDQ    +  +H+   ++
Sbjct:  305 TGYKLYLDNFYTSPTLFRDLYQQRIRACGTMR--INGVGYPKT-------KINALDSIALRGSIRWLREDPLLFVQWRDTRDVFFCSTIHTAHGTETVKRKIKDKEGH--WSSKDIPIPPAVKDYNQHMGGVDLSDQLTGYYDVLHKTKKWY 445          
BLAST of mRNA_H-elongata_contig62709.13849.1 vs. uniprot
Match: A0A6J8C180_MYTCO (UNC45 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8C180_MYTCO)

HSP 1 Score: 65.9 bits (159), Expect = 1.410e-9
Identity = 53/160 (33.12%), Postives = 76/160 (47.50%), Query Frame = 1
Query:    4 GMMLACDNFFTSPILFMCLAKMGVFAVGRLRSTLRGASDAKAWFVEHCPELNSKGVLRERGQLLFMRFRDIAFTLWKDSKEVFFLSTIH---ILKTLRSLQVQVRY-QKVELCW*KWYTRYMGGVDLSDQYNAIHAFMHRAVNYFWRRVFEQKLAQSVTN 471
            G  L  DN++TSPILF  L K+G  A G LRS  +G  D            + K V  ++G+ + M    +    WKD ++V   S+IH    + T R+ +V  +  QK E      Y +YMG VD  DQ     AF  R + + W++VF   L  +  N
Sbjct:  239 GHKLYVDNYYTSPILFHDLRKLGTGACGTLRSNRKGVPD------------DIKNVKLKKGESVAMTNGILQILKWKDKRDVHVCSSIHAAEFVNTGRNDRVTGQVIQKPEAIMD--YNKYMGAVDRCDQMITYPAFKRRTLKW-WKKVFFHLLMLATLN 383          
BLAST of mRNA_H-elongata_contig62709.13849.1 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.460e-9
Identity = 53/158 (33.54%), Postives = 74/158 (46.84%), Query Frame = 1
Query:    1 SGMMLACDNFFTSPILFMCLAKMGVFAVGRLRSTLRGASDAK-AWFVEHCPELNSKGVLRERGQLLFMRFRDIAFTLWKDSKEVFFLSTIHILKTLRSLQVQVRYQKVELCW*KWYTRYMGGVDLSDQYNAIHAFMHRAVNYFWRRVFEQKLAQSVTN 471
            SG+ +A DNFFT   L   LA   +FAV   R    G   +   W  E          + ERGQ+L       A T  K + +       H  + + S Q   R + V         + MGGVD++DQ+   HA  HR + +FWRRVF+QK +Q+V+N
Sbjct:  225 SGVTVAMDNFFTGAALLRYLATRDIFAVRTPRGNRTGVDLSNYIWSKEGMK-------VTERGQMLRP-----ARTSSKRAAD-------HNGEKVSSSQPLARKEHV---------KNMGGVDVADQWLGAHAHTHRPMTFFWRRVFDQKFSQAVSN 354          
BLAST of mRNA_H-elongata_contig62709.13849.1 vs. uniprot
Match: A0A8B7ZQ32_ACAPL (piggyBac transposable element-derived protein 4-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZQ32_ACAPL)

HSP 1 Score: 65.1 bits (157), Expect = 2.420e-9
Identity = 53/155 (34.19%), Postives = 71/155 (45.81%), Query Frame = 1
Query:   22 DNFFTSPILFMCLAKMGVFAVGRLRSTLRGASDAKAWFVEHCPELNSKGVLRERGQLLFMRFRDIAFTLWKDSKEVFFLSTIHILKTLRSLQVQVRYQKVELCW*K-----WYTRYMGGVDLSDQYNAIHAFMHRAVNYFWRRVFEQKLAQSVTN 471
            DN FTSP LF  L+  G  A G LR+   G            PE   K  L+    LL +R     +  W D ++V  +ST+H   T +   V+ R QK      K      YTRYMGGVD SDQ    +  +H+ + + W++VF   L  S  N
Sbjct:  336 DNLFTSPALFDDLSIHGTGACGTLRTNRVGT-----------PEAIKKAKLKTSDPLLSVREGKALYVSWFDKRQVNIVSTVHNATTFQK-NVRARGQKNPRKVDKPVAIECYTRYMGGVDRSDQGMWYYLNIHKTLKW-WKKVFVYILEVSYVN 477          
BLAST of mRNA_H-elongata_contig62709.13849.1 vs. uniprot
Match: A0A3N0Y9X3_ANAGA (PiggyBac transposable element-derived protein 4 n=2 Tax=Xenocypridinae TaxID=2743747 RepID=A0A3N0Y9X3_ANAGA)

HSP 1 Score: 64.7 bits (156), Expect = 3.620e-9
Identity = 48/156 (30.77%), Postives = 66/156 (42.31%), Query Frame = 1
Query:    4 GMMLACDNFFTSPILFMCLAKMGVFAVGRLRSTLRGASDAKAWFVEHCPELNSKGVLRERGQLLFMRFRDIAFTLWKDSKEVFFLSTIHILKTLRSLQVQVRYQKVELCW*----------KWYTRYMGGVDLSDQYNAIHAFMHRAVNYFWRRVF 441
            G  L  DNF+TSP LF+ L +  + A G LR T               PE N      ERG + + R   + F  W D++EV   STIH  K      V    +  +  W           K Y++YMGGVDLSD     +  + +     W ++F
Sbjct:  904 GYRLYTDNFYTSPTLFLDLLQNSILACGALRQT------------SSLPETNDLSGRSERGSIRWCRQGPLLFVKWMDAREVLMCSTIH--KAFTGDTVTRNAKGADGVWKTRQIPVPSAVKDYSKYMGGVDLSDSLIEYYNVLQKTTK--WYKIF 1043          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62709.13849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LEE0_9PHAE1.380e-2034.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQZ5_9PHAE1.290e-1938.55DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KMF5_9PHAE4.890e-1935.43DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A3B4TFC7_SERDU8.320e-1132.35DDE_Tnp_1_7 domain-containing protein n=3 Tax=Seri... [more]
A0A6P7ISU6_9TELE9.620e-1031.48piggyBac transposable element-derived protein 4-li... [more]
A0A3Q0QQV4_AMPCI1.290e-928.29DDE_Tnp_1_7 domain-containing protein n=3 Tax=Hero... [more]
A0A6J8C180_MYTCO1.410e-933.13UNC45 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A... [more]
A0A6H5JC56_9PHAE1.460e-933.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8B7ZQ32_ACAPL2.420e-934.19piggyBac transposable element-derived protein 4-li... [more]
A0A3N0Y9X3_ANAGA3.620e-930.77PiggyBac transposable element-derived protein 4 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62709contigH-elongata_contig62709:274..1178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size471
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62709.13849.1prot_H-elongata_contig62709.13849.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62709 409..1172 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931010.6599145-UTR-H-elongata_contig62709:273..4081622931010.6599145-UTR-H-elongata_contig62709:273..408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62709 274..408 -
1691679661.2445657-UTR-H-elongata_contig62709:273..4081691679661.2445657-UTR-H-elongata_contig62709:273..408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62709 274..408 -
1622931010.7178798-UTR-H-elongata_contig62709:1172..11781622931010.7178798-UTR-H-elongata_contig62709:1172..1178Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62709 1173..1178 -
1691679661.276826-UTR-H-elongata_contig62709:1172..11781691679661.276826-UTR-H-elongata_contig62709:1172..1178Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62709 1173..1178 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931010.6799254-CDS-H-elongata_contig62709:408..4091622931010.6799254-CDS-H-elongata_contig62709:408..409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62709 409..409 -
1691679661.252965-CDS-H-elongata_contig62709:408..4091691679661.252965-CDS-H-elongata_contig62709:408..409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62709 409..409 -
1622931010.6977582-CDS-H-elongata_contig62709:843..11721622931010.6977582-CDS-H-elongata_contig62709:843..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62709 844..1172 -
1691679661.2683256-CDS-H-elongata_contig62709:843..11721691679661.2683256-CDS-H-elongata_contig62709:843..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62709 844..1172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62709.13849.1

>prot_H-elongata_contig62709.13849.1 ID=prot_H-elongata_contig62709.13849.1|Name=mRNA_H-elongata_contig62709.13849.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MMLACDNFFTSPILFMCLAKMGVFAVGRLRSTLRGASDAKAWFVEHCPEL
NSKGVLRERGQLLFMRFRDIAFTLWKDSKEVFFLSTIHILKTLRSLQVQV
RYQKVELCW*
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mRNA from alignment at H-elongata_contig62709:274..1178-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62709.13849.1 ID=mRNA_H-elongata_contig62709.13849.1|Name=mRNA_H-elongata_contig62709.13849.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=905bp|location=Sequence derived from alignment at H-elongata_contig62709:274..1178- (Himanthalia elongata Himel1 dioecious)
TCTGGAATGATGTTGGCGTGTGATAATTTCTTCACATCACCCATCCTTTT CATGTGCTTAGCGAAGATGGGTGTCTTTGCCGTAGGTAGACTTCGGTCCA CCTTGCGCGGGGCCTCAGATGCAAAGGCGTGGTTCGTGGAGCATTGCCCG GAACTCAACAGCAAGGGCGTACTACGGGAGAGGGGGCAGTTGTTATTCAT GCGTTTCCGCGACATTGCCTTCACGTTGTGGAAAGATTCGAAGGAAGTGT TCTTCTTATCCACAATCCATATATTAAAAACACTTCGGTCGCTTCAAGTA CAGGTACGATACCAGAAGGTCGAATTATGTTGGTAGTATGTTGTCATCGT AGCGTCTTGGCGTCGTTTTCCGAAAACATTATTATTACTTAACAATAATT AATGCTTGGCCAAAATACGTCGTGCATTGAAGGTCATTAAATGCTACTTC CTCCCGACATGCGATATGTGAAACTTTGGACAACTCGAGTTCTCTTCTGC GCCAGGCACGCACGGCACCCTCGCTAAGCGTATATATGTACTCCAGCTTT GACGGGGATTTTTTCTAAGCATGTGGTGTTTATTCCACGCTTCGAGTTTT GACAAGTTGGGTAGGACGTTGCGATTTATCACGTGGCACTTTCTTTCGAA TTATACTTCATAACATTAATGATCGGCGTCTTTTTGTTTTTACGTCCCCG CCTCTTGTACAGTTGACGGCCAGGAGGTAAAGGCGTCCCGGCCTACGAAG GCCAACAGCCACTAGTTAGAAAGTGGTACACCAGATATATGGGTGGCGTT GATTTGTCCGATCAGTATAACGCTATCCATGCCTTCATGCACCGGGCGGT AAACTATTTTTGGCGACGAGTCTTTGAACAAAAATTGGCGCAATCTGTCA CTAAC
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Coding sequence (CDS) from alignment at H-elongata_contig62709:274..1178-

>mRNA_H-elongata_contig62709.13849.1 ID=mRNA_H-elongata_contig62709.13849.1|Name=mRNA_H-elongata_contig62709.13849.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig62709:274..1178- (Himanthalia elongata Himel1 dioecious)
ATGATGTTGGCGTGTGATAATTTCTTCACATCACCCATCCTTTTCATGTG
CTTAGCGAAGATGGGTGTCTTTGCCGTAGGTAGACTTCGGTCCACCTTGC
GCGGGGCCTCAGATGCAAAGGCGTGGTTCGTGGAGCATTGCCCGGAACTC
AACAGCAAGGGCGTACTACGGGAGAGGGGGCAGTTGTTATTCATGCGTTT
CCGCGACATTGCCTTCACGTTGTGGAAAGATTCGAAGGAAGTGTTCTTCT
TATCCACAATCCATATATTAAAAACACTTCGGTCGCTTCAAGTACAGGTA
CGATACCAGAAGGTCGAATTATGTTGGTAATGATGTTGGCGTGTGATAAT
TTCTTCACATCACCCATCCTTTTCATGTGCTTAGCGAAGATGGGTGTCTT
TGCCGTAGGTAGACTTCGGTCCACCTTGCGCGGGGCCTCAGATGCAAAGG
CGTGGTTCGTGGAGCATTGCCCGGAACTCAACAGCAAGGGCGTACTACGG
GAGAGGGGGCAGTTGTTATTCATGCGTTTCCGCGACATTGCCTTCACGTT
GTGGAAAGATTCGAAGGAAGTGTTCTTCTTATCCACAATCCATATATTAA
AAACACTTCGGTCGCTTCAAGTACAGGTACGATACCAGAAGGTCGAATTA
TGTTGGTAAA
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