mRNA_H-elongata_contig62619.13836.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A6H5KBB7_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB7_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 3.510e-7 Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1
Query: 22 VYRRRHHCRYCGRVVCAACSPSLVEGQRACEPCRARAAKI---RPVSDLTQ 165
V R RHHCR+CGRVVC CS + V+GQRAC+ C +R + +P ++L +
Sbjct: 150 VLRWRHHCRFCGRVVCEDCSAAKVDGQRACDSCLSRTDPVATEKPSANLAE 200
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A812LZ53_9DINO (EEA1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812LZ53_9DINO) HSP 1 Score: 52.8 bits (125), Expect = 6.470e-7 Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 1
Query: 28 RRRHHCRYCGRVVCAACSPSLV-------EGQRACEPCRARAAKIR 144
R RHHCR CGR VCA+CSP+L E QRAC PC A A +IR
Sbjct: 80 RPRHHCRICGRCVCASCSPNLALMPGSGRELQRACTPCMAVAPRIR 125
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A812GPZ2_9DINO (Rufy2 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812GPZ2_9DINO) HSP 1 Score: 50.8 bits (120), Expect = 3.380e-6 Identity = 26/45 (57.78%), Postives = 29/45 (64.44%), Query Frame = 1
Query: 28 RRRHHCRYCGRVVCAACSPSLV-------EGQRACEPCRARAAKI 141
R RHHCR CGR VCA+CSP+LV E QRAC PC A A +
Sbjct: 77 RPRHHCRICGRCVCASCSPNLVLMPGSGRELQRACTPCMAVAPRF 121
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A812JN61_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812JN61_9DINO) HSP 1 Score: 50.4 bits (119), Expect = 1.060e-5 Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 1
Query: 28 RRRHHCRYCGRVVCAACSPSLV-------EGQRACEPCRARAAKIRPV-SDLTQL 168
R RHHCR CGR VCA+CSP+L E QRAC PC A A K + S ++QL
Sbjct: 120 RPRHHCRICGRCVCASCSPNLALMPGSGRELQRACTPCMAVAYKAPALKSRISQL 174
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A7J6QPD9_PEROL (1-phosphatidylinositol-3-phosphate 5-kinase n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6QPD9_PEROL) HSP 1 Score: 49.3 bits (116), Expect = 3.850e-5 Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 1
Query: 7 TRTGQVYRRRHHCRYCGRVVCAACSPSLVEGQ-RACEPCRARAAKIRP 147
+RT +RR+HHCR CGR+ C CS +EGQ R C+ C A + P
Sbjct: 13 SRTFHAFRRKHHCRICGRIFCYRCSNHFIEGQHRVCDHCHAAMLQHSP 60
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A7J6MF88_PEROL (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6MF88_PEROL) HSP 1 Score: 49.3 bits (116), Expect = 3.860e-5 Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 1
Query: 7 TRTGQVYRRRHHCRYCGRVVCAACSPSLVEGQ-RACEPCRARAAKIRP 147
+RT +RR+HHCR CGR+ C CS +EGQ R C+ C A + P
Sbjct: 222 SRTFHAFRRKHHCRICGRIFCYRCSNHFIEGQHRVCDHCHAAMLQHSP 269
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A7J6SCY1_PEROL (Ubiquitin-specific protease ubp15 (Fragment) n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SCY1_PEROL) HSP 1 Score: 49.3 bits (116), Expect = 3.860e-5 Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 1
Query: 7 TRTGQVYRRRHHCRYCGRVVCAACSPSLVEGQ-RACEPCRARAAKIRP 147
+RT +RR+HHCR CGR+ C CS +EGQ R C+ C A + P
Sbjct: 1448 SRTFHAFRRKHHCRICGRIFCYRCSNHFIEGQHRVCDHCHAAMLQHSP 1495
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A7J6RB57_PEROL (DNA damage-binding protein 1 n=6 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RB57_PEROL) HSP 1 Score: 49.3 bits (116), Expect = 3.880e-5 Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 1
Query: 7 TRTGQVYRRRHHCRYCGRVVCAACSPSLVEGQ-RACEPCRARAAKIRP 147
+RT +RR+HHCR CGR+ C CS +EGQ R C+ C A + P
Sbjct: 1466 SRTFHAFRRKHHCRICGRIFCYRCSNHFIEGQHRVCDHCHAAMLQHSP 1513
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: D7FSU7_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSU7_ECTSI) HSP 1 Score: 48.9 bits (115), Expect = 5.240e-5 Identity = 27/53 (50.94%), Postives = 30/53 (56.60%), Query Frame = 1
Query: 22 VYRRRHHCRYCGRVVCAACSPSLVEGQRACEPCRARAAKIRPVSDLTQLPKNE 180
VYRRRHHCR CGRV C CS + G R C C R R +S L LP N+
Sbjct: 103 VYRRRHHCRTCGRVTCDDCSSKRIRGDRTCLLCWDRIG--RKMSGLG-LPSND 152
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A7J6MHG5_PERCH (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MHG5_PERCH) HSP 1 Score: 48.9 bits (115), Expect = 5.280e-5 Identity = 25/59 (42.37%), Postives = 32/59 (54.24%), Query Frame = 1
Query: 7 TRTGQVYRRRHHCRYCGRVVCAACSPSLVEGQ-RACEPCRARAAKIRPVSDLTQLPKNE 180
+RT +RR+HHCR CGR+ C CS +EGQ R C+ C + P D QL E
Sbjct: 201 SRTFHAFRRKHHCRICGRIFCYRCSNHFIEGQHRVCDHCHSTVLLHSP--DAQQLVAKE 257 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig62619.13836.1 >prot_H-elongata_contig62619.13836.1 ID=prot_H-elongata_contig62619.13836.1|Name=mRNA_H-elongata_contig62619.13836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp MRTRTGQVYRRRHHCRYCGRVVCAACSPSLVEGQRACEPCRARAAKIRPVback to top mRNA from alignment at H-elongata_contig62619:1795..1992+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig62619.13836.1 ID=mRNA_H-elongata_contig62619.13836.1|Name=mRNA_H-elongata_contig62619.13836.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig62619:1795..1992+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig62619:1795..1992+ >mRNA_H-elongata_contig62619.13836.1 ID=mRNA_H-elongata_contig62619.13836.1|Name=mRNA_H-elongata_contig62619.13836.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig62619:1795..1992+ (Himanthalia elongata Himel1 dioecious)back to top |