mRNA_H-elongata_contig62619.13836.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62619.13836.1
Unique NamemRNA_H-elongata_contig62619.13836.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A6H5KBB7_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB7_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.510e-7
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1
Query:   22 VYRRRHHCRYCGRVVCAACSPSLVEGQRACEPCRARAAKI---RPVSDLTQ 165
            V R RHHCR+CGRVVC  CS + V+GQRAC+ C +R   +   +P ++L +
Sbjct:  150 VLRWRHHCRFCGRVVCEDCSAAKVDGQRACDSCLSRTDPVATEKPSANLAE 200          
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A812LZ53_9DINO (EEA1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812LZ53_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 6.470e-7
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 1
Query:   28 RRRHHCRYCGRVVCAACSPSLV-------EGQRACEPCRARAAKIR 144
            R RHHCR CGR VCA+CSP+L        E QRAC PC A A +IR
Sbjct:   80 RPRHHCRICGRCVCASCSPNLALMPGSGRELQRACTPCMAVAPRIR 125          
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A812GPZ2_9DINO (Rufy2 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812GPZ2_9DINO)

HSP 1 Score: 50.8 bits (120), Expect = 3.380e-6
Identity = 26/45 (57.78%), Postives = 29/45 (64.44%), Query Frame = 1
Query:   28 RRRHHCRYCGRVVCAACSPSLV-------EGQRACEPCRARAAKI 141
            R RHHCR CGR VCA+CSP+LV       E QRAC PC A A + 
Sbjct:   77 RPRHHCRICGRCVCASCSPNLVLMPGSGRELQRACTPCMAVAPRF 121          
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A812JN61_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812JN61_9DINO)

HSP 1 Score: 50.4 bits (119), Expect = 1.060e-5
Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   28 RRRHHCRYCGRVVCAACSPSLV-------EGQRACEPCRARAAKIRPV-SDLTQL 168
            R RHHCR CGR VCA+CSP+L        E QRAC PC A A K   + S ++QL
Sbjct:  120 RPRHHCRICGRCVCASCSPNLALMPGSGRELQRACTPCMAVAYKAPALKSRISQL 174          
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A7J6QPD9_PEROL (1-phosphatidylinositol-3-phosphate 5-kinase n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6QPD9_PEROL)

HSP 1 Score: 49.3 bits (116), Expect = 3.850e-5
Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 1
Query:    7 TRTGQVYRRRHHCRYCGRVVCAACSPSLVEGQ-RACEPCRARAAKIRP 147
            +RT   +RR+HHCR CGR+ C  CS   +EGQ R C+ C A   +  P
Sbjct:   13 SRTFHAFRRKHHCRICGRIFCYRCSNHFIEGQHRVCDHCHAAMLQHSP 60          
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A7J6MF88_PEROL (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6MF88_PEROL)

HSP 1 Score: 49.3 bits (116), Expect = 3.860e-5
Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 1
Query:    7 TRTGQVYRRRHHCRYCGRVVCAACSPSLVEGQ-RACEPCRARAAKIRP 147
            +RT   +RR+HHCR CGR+ C  CS   +EGQ R C+ C A   +  P
Sbjct:  222 SRTFHAFRRKHHCRICGRIFCYRCSNHFIEGQHRVCDHCHAAMLQHSP 269          
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A7J6SCY1_PEROL (Ubiquitin-specific protease ubp15 (Fragment) n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SCY1_PEROL)

HSP 1 Score: 49.3 bits (116), Expect = 3.860e-5
Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 1
Query:    7 TRTGQVYRRRHHCRYCGRVVCAACSPSLVEGQ-RACEPCRARAAKIRP 147
            +RT   +RR+HHCR CGR+ C  CS   +EGQ R C+ C A   +  P
Sbjct: 1448 SRTFHAFRRKHHCRICGRIFCYRCSNHFIEGQHRVCDHCHAAMLQHSP 1495          
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A7J6RB57_PEROL (DNA damage-binding protein 1 n=6 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RB57_PEROL)

HSP 1 Score: 49.3 bits (116), Expect = 3.880e-5
Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 1
Query:    7 TRTGQVYRRRHHCRYCGRVVCAACSPSLVEGQ-RACEPCRARAAKIRP 147
            +RT   +RR+HHCR CGR+ C  CS   +EGQ R C+ C A   +  P
Sbjct: 1466 SRTFHAFRRKHHCRICGRIFCYRCSNHFIEGQHRVCDHCHAAMLQHSP 1513          
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: D7FSU7_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSU7_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 5.240e-5
Identity = 27/53 (50.94%), Postives = 30/53 (56.60%), Query Frame = 1
Query:   22 VYRRRHHCRYCGRVVCAACSPSLVEGQRACEPCRARAAKIRPVSDLTQLPKNE 180
            VYRRRHHCR CGRV C  CS   + G R C  C  R    R +S L  LP N+
Sbjct:  103 VYRRRHHCRTCGRVTCDDCSSKRIRGDRTCLLCWDRIG--RKMSGLG-LPSND 152          
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Match: A0A7J6MHG5_PERCH (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MHG5_PERCH)

HSP 1 Score: 48.9 bits (115), Expect = 5.280e-5
Identity = 25/59 (42.37%), Postives = 32/59 (54.24%), Query Frame = 1
Query:    7 TRTGQVYRRRHHCRYCGRVVCAACSPSLVEGQ-RACEPCRARAAKIRPVSDLTQLPKNE 180
            +RT   +RR+HHCR CGR+ C  CS   +EGQ R C+ C +      P  D  QL   E
Sbjct:  201 SRTFHAFRRKHHCRICGRIFCYRCSNHFIEGQHRVCDHCHSTVLLHSP--DAQQLVAKE 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62619.13836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KBB7_9PHAE3.510e-749.02FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A812LZ53_9DINO6.470e-758.70EEA1 protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A812GPZ2_9DINO3.380e-657.78Rufy2 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A812JN61_9DINO1.060e-552.73Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7J6QPD9_PEROL3.850e-545.831-phosphatidylinositol-3-phosphate 5-kinase n=2 Ta... [more]
A0A7J6MF88_PEROL3.860e-545.831-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A7J6SCY1_PEROL3.860e-545.83Ubiquitin-specific protease ubp15 (Fragment) n=2 T... [more]
A0A7J6RB57_PEROL3.880e-545.83DNA damage-binding protein 1 n=6 Tax=Perkinsus ols... [more]
D7FSU7_ECTSI5.240e-550.94FYVE-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7J6MHG5_PERCH5.280e-542.371-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62619contigH-elongata_contig62619:1795..1992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-12_000980.1
Exons1
Model size198
Cds size198
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.9686475-CDS-H-elongata_contig62619:1794..19921622931008.9686475-CDS-H-elongata_contig62619:1794..1992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62619 1795..1992 +
1691679660.4964428-CDS-H-elongata_contig62619:1794..19921691679660.4964428-CDS-H-elongata_contig62619:1794..1992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62619 1795..1992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62619.13836.1prot_H-elongata_contig62619.13836.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62619 1795..1992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62619.13836.1

>prot_H-elongata_contig62619.13836.1 ID=prot_H-elongata_contig62619.13836.1|Name=mRNA_H-elongata_contig62619.13836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MRTRTGQVYRRRHHCRYCGRVVCAACSPSLVEGQRACEPCRARAAKIRPV
SDLTQLPKNEIYNHK*
back to top

mRNA from alignment at H-elongata_contig62619:1795..1992+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62619.13836.1 ID=mRNA_H-elongata_contig62619.13836.1|Name=mRNA_H-elongata_contig62619.13836.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig62619:1795..1992+ (Himanthalia elongata Himel1 dioecious)
ATGCGCACGCGGACGGGGCAGGTCTATCGCAGACGTCACCACTGCAGGTA CTGCGGGCGCGTCGTATGTGCTGCCTGCAGCCCCTCTCTGGTCGAGGGAC AGAGGGCGTGTGAGCCATGCCGTGCCCGCGCCGCCAAGATCCGCCCGGTG AGCGACCTTACTCAATTGCCAAAAAATGAAATATATAATCATAAGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig62619:1795..1992+

>mRNA_H-elongata_contig62619.13836.1 ID=mRNA_H-elongata_contig62619.13836.1|Name=mRNA_H-elongata_contig62619.13836.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig62619:1795..1992+ (Himanthalia elongata Himel1 dioecious)
ATGCGCACGCGGACGGGGCAGGTCTATCGCAGACGTCACCACTGCAGGTA
CTGCGGGCGCGTCGTATGTGCTGCCTGCAGCCCCTCTCTGGTCGAGGGAC
AGAGGGCGTGTGAGCCATGCCGTGCCCGCGCCGCCAAGATCCGCCCGGTG
AGCGACCTTACTCAATTGCCAAAAAATGAAATATATAATCATAAGTAAAT
GCGCACGCGGACGGGGCAGGTCTATCGCAGACGTCACCACTGCAGGTACT
GCGGGCGCGTCGTATGTGCTGCCTGCAGCCCCTCTCTGGTCGAGGGACAG
AGGGCGTGTGAGCCATGCCGTGCCCGCGCCGCCAAGATCCGCCCGGTGAG
CGACCTTACTCAATTGCCAAAAAATGAAATATATAATCATAAGTAA
back to top