mRNA_H-elongata_contig62572.13829.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62572.13829.1
Unique NamemRNA_H-elongata_contig62572.13829.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62572.13829.1 vs. uniprot
Match: D8LJG4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG4_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.860e-15
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  340 RFPGVAAADWKRELSVSLCTNLVPEHMVNLKDDLTGNDTAMLYRFWPSAKRTKEQFPIILSGQKELQ 540
            R P VA   W +EL  S+CT LVPEHMV+LKD+L+G D  +LYRFWPSAKR K  F I+L GQ  LQ
Sbjct:  768 RAPRVAHGKWNKELFGSVCTELVPEHMVDLKDELSGRDAGLLYRFWPSAKRAKRPFSIMLPGQMYLQ 834
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BLAST of mRNA_H-elongata_contig62572.13829.1 vs. uniprot
Match: A0A6H5K688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.150e-14
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:  340 RFPGVAAADWKRELSVSLCTNLVPEHMVNLKDDLTGNDTAMLYRFWPSAKRTKEQFPIILSGQ 528
            R P VA   W +EL  SLCT LVPEHMV+LKD+L+G D  +LY FWPSAKR K  F I+L GQ
Sbjct: 2723 RAPRVAHGTWNKELFGSLCTELVPEHMVDLKDELSGRDAGLLYHFWPSAKRAKRPFSIMLPGQ 2785
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62572.13829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJG4_ECTSI1.860e-1561.19RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K688_9PHAE1.150e-1461.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62572contigH-elongata_contig62572:2135..3231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size885
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62572.13829.1prot_H-elongata_contig62572.13829.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62572 2135..2814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.4123325-CDS-H-elongata_contig62572:2134..24911622931008.4123325-CDS-H-elongata_contig62572:2134..2491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62572 2135..2491 -
1691679660.293909-CDS-H-elongata_contig62572:2134..24911691679660.293909-CDS-H-elongata_contig62572:2134..2491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62572 2135..2491 -
1622931008.4299204-CDS-H-elongata_contig62572:2703..28141622931008.4299204-CDS-H-elongata_contig62572:2703..2814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62572 2704..2814 -
1691679660.303923-CDS-H-elongata_contig62572:2703..28141691679660.303923-CDS-H-elongata_contig62572:2703..2814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62572 2704..2814 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.4495149-UTR-H-elongata_contig62572:2814..32311622931008.4495149-UTR-H-elongata_contig62572:2814..3231Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62572 2815..3231 -
1691679660.3186803-UTR-H-elongata_contig62572:2814..32311691679660.3186803-UTR-H-elongata_contig62572:2814..3231Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62572 2815..3231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62572.13829.1

>prot_H-elongata_contig62572.13829.1 ID=prot_H-elongata_contig62572.13829.1|Name=mRNA_H-elongata_contig62572.13829.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MVNLKDDLTGNDTAMLYRFWPSAKRTKEQFPIILSGQKELQESLTARQAW
EANSAGRDEEFPEEEEEEEESEGDHQHSQGQSENGVGGVHVAAAGGDRGA
GRGDGDDSRPVGVAAETAASSSLSRGSNESAAADPAQSGGQDNDSSILGG
GVTSAG
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mRNA from alignment at H-elongata_contig62572:2135..3231-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62572.13829.1 ID=mRNA_H-elongata_contig62572.13829.1|Name=mRNA_H-elongata_contig62572.13829.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1097bp|location=Sequence derived from alignment at H-elongata_contig62572:2135..3231- (Himanthalia elongata Himel1 dioecious)
ATATNNNNNNNNNNGGATTGCACCTATGGTGCATGAAGGTGTGGATGTTC
GGAGAGTGAGAATGAGCCTAAAGTCTTTTAAATAAAAAAAGAAAAAGAAA
GAAAGAAAGCAGATTGTTGTATTTTAGCGTGACGTTAAAAATCGAGTGAA
AGTATTTTCGGTGATGTGGGGATGTGAGATGTGAGATGGAAACCAGAAGA
GCAAACGACCGTTAGCTATACCAGTCACAAATCACTTGCATTGAGAGGGT
TTTACAGCCATAATCCCTGACCCCTTACGTCCCCGTCCCCGTCCCTCACA
ATAACCTGGCCATATGATCTCACAGGGAAATCTCTGCGACGCTTCCCAGG
CGTGGCGGCCGCGGACTGGAAGAGAGAGCTCTCCGTGAGCCTGTGCACCA
ACCTGGTGCCTGAGCACATGGTGAATCTGAAGGACGATCTCACGGGAAAC
GACACGGCTATGCTGTACCGCTTCTGGCCGTCGGCGAAACGAACCAAGGA
GCAGTTTCCCATAATTCTTTCTGGACAGGTGAACACCCATGGACGACGTG
GTTCGGTGCCTCTTTAGCGCTATCTCTCTGTGTATGTGTATATGTGAGCT
AGAGGCAGTAGACTGGACGGCGATGTGTATCGGTATCGCTTTGCCCCGTC
GGCCATAGATCGCGTCCTTTGCCTTTGGCGTCGTTTGACCAACCGATCGA
TCCAATTGTTGTGTTTCTTTTCTCGGATGCCCTTCCGCAGAAGGAGCTAC
AGGAAAGCTTGACGGCGCGGCAGGCGTGGGAGGCCAATTCCGCTGGAAGG
GACGAAGAGTTTCCCGAGGAGGAAGAAGAGGAGGAGGAGAGCGAGGGGGA
TCACCAACATTCTCAAGGCCAAAGCGAGAACGGCGTCGGAGGAGTCCACG
TAGCGGCGGCAGGGGGCGACCGCGGCGCAGGCAGAGGGGACGGGGACGAT
TCCCGGCCGGTCGGAGTCGCCGCCGAAACCGCTGCCTCCTCTTCCTTGTC
GCGAGGTTCCAATGAGAGCGCAGCGGCTGACCCAGCTCAGTCAGGTGGCC
AGGATAACGACTCTTCCATTCTGGGTGGAGGCGTTACTTCTGCCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig62572:2135..3231-

>mRNA_H-elongata_contig62572.13829.1 ID=mRNA_H-elongata_contig62572.13829.1|Name=mRNA_H-elongata_contig62572.13829.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig62572:2135..3231- (Himanthalia elongata Himel1 dioecious)
ATGGTGAATCTGAAGGACGATCTCACGGGAAACGACACGGCTATGCTGTA
CCGCTTCTGGCCGTCGGCGAAACGAACCAAGGAGCAGTTTCCCATAATTC
TTTCTGGACAGATGGTGAATCTGAAGGACGATCTCACGGGAAACGACACG
GCTATGCTGTACCGCTTCTGGCCGTCGGCGAAACGAACCAAGGAGCAGTT
TCCCATAATTCTTTCTGGACAGAAGGAGCTACAGGAAAGCTTGACGGCGC
GGCAGGCGTGGGAGGCCAATTCCGCTGGAAGGGACGAAGAGTTTCCCGAG
GAGGAAGAAGAGGAGGAGGAGAGCGAGGGGGATCACCAACATTCTCAAGG
CCAAAGCGAGAACGGCGTCGGAGGAGTCCACGTAGCGGCGGCAGGGGGCG
ACCGCGGCGCAGGCAGAGGGGACGGGGACGATTCCCGGCCGGTCGGAGTC
GCCGCCGAAACCGCTGCCTCCTCTTCCTTGTCGCGAGGTTCCAATGAGAG
CGCAGCGGCTGACCCAGCTCAGTCAGGTGGCCAGGATAACGACTCTTCCA
TTCTGGGTGGAGGCGTTACTTCTGCCGGTAAGGAGCTACAGGAAAGCTTG
ACGGCGCGGCAGGCGTGGGAGGCCAATTCCGCTGGAAGGGACGAAGAGTT
TCCCGAGGAGGAAGAAGAGGAGGAGGAGAGCGAGGGGGATCACCAACATT
CTCAAGGCCAAAGCGAGAACGGCGTCGGAGGAGTCCACGTAGCGGCGGCA
GGGGGCGACCGCGGCGCAGGCAGAGGGGACGGGGACGATTCCCGGCCGGT
CGGAGTCGCCGCCGAAACCGCTGCCTCCTCTTCCTTGTCGCGAGGTTCCA
ATGAGAGCGCAGCGGCTGACCCAGCTCAGTCAGGTGGCCAGGATAACGAC
TCTTCCATTCTGGGTGGAGGCGTTACTTCTGCCGGT
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